Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000015.1

Orthogroup ID

OG0014816

Physical Location & Seq

Genomic Coordinates Reverse (-)

17668 .. 20530

Gene Structure 2863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000015.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgctgatagactcaagcttggtgggtcatttctcaaatgatgatggaactgagctgctgcggttagcttcacaatgcttgcagtttgatccttgtaagagaccaaatcctaagtctcttgtgactgccctcattcctcttcagagagaaacagaggttccatcacgcgttttgatggatattccacatgggaatgtgcctccgaaacagttgtcacctctgggtgaaccttgctcgaaattggaccttgctcgaaattggatcttagttgcagtgtcacctcctaacactcacatatattctctacttgatgacatctgccaaccttctttcgatttgtggacagatacaatgaagaaggcactaaatcctaagcagaagggagatgctgcttttagagataaagactttgggaaagcaataggtccctatactgaaccttctttcgatttgtggacagatacaatgaagaaggcactaaatcctaagcagaagggagatgctgcttttagagataaagatggtcagtttgattggcttcttctccaacccgagaccgttgtcgctcctcttgcccagtcggcctcgtcttcagccaaagaccgctatcgcttctctagttcagaatggcctcgttgtccagttgcctttgtctgcctccgacaccagagaagagatcaatctcttcaactcgtcgcccaatctgcttcatgccaggactcaacccagttcccatccggtcacctgatccatccccgactgtgctccagtccacgatcgtgctcagactcgctcaccaaggttcgctttctgttgcatcttcaactcgatccgcccagtcaactcggtcagcctcactcattccggaggaatgattcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

293

Amino Acids

32.82

Weight (kDa)

8.35

Isoelectric Point (pI)

59.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014816)

Species	Orthologous Gene IDs
malus_domestica	MD01G1088500.v1.1 MD05G1020300.v1.1 MD11G1085100.v1.1
prunus_persica	Prupe.6G065500_v2.0.a1 Prupe.6G065500_v2.0.a1
pyrus_communis	pycom01g08590 pycom07g06710 pycom12g14880
rosa_multiflora	Rmu_co8319927.1_g000001 Rmu_sc0000015.1_g000004
rosa_roxburghii	Rroxscaffold_1G00013800 Rroxscaffold_1G00013810
rosa_rugosa	Rorug05G0383900
rosa_samantha	Rh3DG134600 Rh5BG460400 Rh5CG482700 Rh5DG475500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	168
AccIII	TCCGGA	1 cut(s)	864
AciI	CCGC	3 cut(s)	61, 604, 833
AclWI	GGATC	4 cut(s)	83, 269, 742, 824
AcuI	CTGAAG	2 cut(s)	125, 576
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	2 cut(s)	689, 824
AjnI	CCWGG	1 cut(s)	714
AleI	CACNNNNGTG	1 cut(s)	778
AluBI	AGCT	3 cut(s)	18, 55, 68
AluI	AGCT	3 cut(s)	18, 55, 68
Alw21I	GWGCWC	2 cut(s)	767, 785
Alw26I	GTCTC	3 cut(s)	94, 120, 548
AlwI	GGATC	4 cut(s)	83, 269, 742, 824
Ama87I	CYCGRG	1 cut(s)	551
Aor13HI	TCCGGA	1 cut(s)	864
AoxI	GGCC	2 cut(s)	582, 629
ApeKI	GCWGC	4 cut(s)	55, 58, 389, 503
ArsI	GACNNNNNNTTYG	4 cut(s)	98, 130, 197, 229
AspS9I	GGNCC	2 cut(s)	244, 425
AsuHPI	GGTGA	5 cut(s)	207, 236, 270, 734, 787
AvaI	CYCGRG	1 cut(s)	551
AvaII	GGWCC	2 cut(s)	244, 425
BbsI	GAAGAC	1 cut(s)	582
Bbv12I	GWGCWC	2 cut(s)	767, 785
BbvI	GCAGC	4 cut(s)	42, 45, 376, 490
BccI	CCATC	6 cut(s)	38, 169, 169, 515, 742, 759
BciT130I	CCWGG	1 cut(s)	716
BcoDI	GTCTC	3 cut(s)	94, 120, 548
BfaI	CTAG	1 cut(s)	618
BglI	GCCNNNNNGGC	1 cut(s)	581
BisI	GCNGC	4 cut(s)	56, 59, 390, 504
BlsI	GCNGC	4 cut(s)	57, 60, 391, 505
Bme1390I	CCNGG	1 cut(s)	716
Bme18I	GGWCC	2 cut(s)	244, 425
BmeT110I	CYCGRG	1 cut(s)	551
BmgT120I	GGNCC	2 cut(s)	244, 425
BmiI	GGNNCC	2 cut(s)	159, 427
BmrFI	CCNGG	1 cut(s)	716
BmrI	ACTGGG	3 cut(s)	571, 721, 831
BmsI	GCATC	3 cut(s)	376, 490, 826
BmuI	ACTGGG	3 cut(s)	571, 721, 831
BoxI	GACNNNNGTC	1 cut(s)	560
BpiI	GAAGAC	1 cut(s)	582
BpmI	CTGGAG	1 cut(s)	751
Bpu10I	CCTNAGC	2 cut(s)	372, 486
BsaI	GGTCTC	2 cut(s)	94, 548
BsaJI	CCNNGG	1 cut(s)	798
BsaWI	WCCGGW	2 cut(s)	737, 864
Bse1I	ACTGG	5 cut(s)	577, 641, 727, 768, 837
BseAI	TCCGGA	1 cut(s)	864
BseBI	CCWGG	1 cut(s)	716
BseDI	CCNNGG	1 cut(s)	798
BseGI	GGATG	2 cut(s)	734, 751
BseMII	CTCAG	2 cut(s)	42, 798
BseNI	ACTGG	5 cut(s)	577, 641, 727, 768, 837
BseRI	GAGGAG	1 cut(s)	558
BseXI	GCAGC	4 cut(s)	42, 45, 376, 490
Bsh1236I	CGCG	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	779
BshFI	GGCC	2 cut(s)	584, 631
BsiEI	CGRYCG	1 cut(s)	779
BsiHKAI	GWGCWC	2 cut(s)	767, 785
BsiHKCI	CYCGRG	1 cut(s)	551
BsiSI	CCGG	2 cut(s)	738, 865
BslFI	GGGAC	1 cut(s)	411
BsmAI	GTCTC	3 cut(s)	94, 120, 548
BsmFI	GGGAC	1 cut(s)	411
BsnI	GGCC	2 cut(s)	584, 631
Bso31I	GGTCTC	2 cut(s)	94, 548
BsoBI	CYCGRG	1 cut(s)	551
Bsp1286I	GDGCHC	2 cut(s)	767, 785
Bsp13I	TCCGGA	1 cut(s)	864
Bsp143I	GATC	6 cut(s)	88, 261, 676, 747, 776, 829
BspACI	CCGC	3 cut(s)	61, 604, 833
BspANI	GGCC	2 cut(s)	584, 631
BspCNI	CTCAG	2 cut(s)	43, 797
BspEI	TCCGGA	1 cut(s)	864
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	159, 427
BspPI	GGATC	4 cut(s)	83, 269, 742, 824
BspTNI	GGTCTC	2 cut(s)	94, 548
BsrI	ACTGG	5 cut(s)	577, 641, 727, 768, 837
BssECI	CCNNGG	1 cut(s)	798
BssMI	GATC	6 cut(s)	88, 261, 676, 747, 776, 829
BssT1I	CCWWGG	1 cut(s)	798
Bst2UI	CCWGG	1 cut(s)	716
Bst4CI	ACNGT	3 cut(s)	210, 559, 762
Bst6I	CTCTTC	3 cut(s)	144, 667, 690
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	6 cut(s)	51, 111, 265, 372, 486, 784
BstEII	GGTNACC	1 cut(s)	740
BstF5I	GGATG	2 cut(s)	734, 751
BstFNI	CGCG	1 cut(s)	168
BstKTI	GATC	6 cut(s)	91, 264, 679, 750, 779, 832
BstMAI	GTCTC	3 cut(s)	94, 120, 548
BstMBI	GATC	6 cut(s)	88, 261, 676, 747, 776, 829
BstMCI	CGRYCG	1 cut(s)	779
BstMWI	GCNNNNNNNGC	3 cut(s)	572, 581, 704
BstNI	CCWGG	1 cut(s)	716
BstPAI	GACNNNNGTC	1 cut(s)	560
BstPI	GGTNACC	1 cut(s)	740
BstSCI	CCNGG	1 cut(s)	714
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	4 cut(s)	42, 45, 376, 490
BstV2I	GAAGAC	1 cut(s)	582
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	584, 631
BtsCI	GGATG	2 cut(s)	734, 751
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	244, 425
CspCI	CAANNNNNGTGG	1 cut(s)	38
CviAII	CATG	2 cut(s)	188, 711
CviJI	RGCY	8 cut(s)	18, 55, 68, 538, 584, 596, 631, 853
CviKI_1	RGCY	8 cut(s)	18, 55, 68, 538, 584, 596, 631, 853
DdeI	CTNAG	6 cut(s)	51, 111, 265, 372, 486, 784
DpnI	GATC	6 cut(s)	90, 263, 678, 749, 778, 831
DpnII	GATC	6 cut(s)	88, 261, 676, 747, 776, 829
Eam1104I	CTCTTC	3 cut(s)	144, 667, 690
EarI	CTCTTC	3 cut(s)	144, 667, 690
EciI	GGCGGA	1 cut(s)	822
Eco130I	CCWWGG	1 cut(s)	798
Eco31I	GGTCTC	2 cut(s)	94, 548
Eco47I	GGWCC	2 cut(s)	244, 425
Eco57I	CTGAAG	2 cut(s)	125, 576
Eco88I	CYCGRG	1 cut(s)	551
Eco91I	GGTNACC	1 cut(s)	740
EcoO109I	RGGNCCY	1 cut(s)	425
EcoO65I	GGTNACC	1 cut(s)	740
EcoRII	CCWGG	1 cut(s)	714
EcoT14I	CCWWGG	1 cut(s)	798
ErhI	CCWWGG	1 cut(s)	798
FaeI	CATG	2 cut(s)	191, 714
FaiI	YATR	5 cut(s)	189, 296, 298, 432, 712
FalI	AAGNNNNNCTT	2 cut(s)	791, 823
FaqI	GGGAC	1 cut(s)	411
FatI	CATG	2 cut(s)	187, 710
Fnu4HI	GCNGC	4 cut(s)	56, 59, 390, 504
FokI	GGATG	2 cut(s)	721, 738
Fsp4HI	GCNGC	4 cut(s)	56, 59, 390, 504
FspBI	CTAG	1 cut(s)	618
GluI	GCNGC	4 cut(s)	56, 59, 390, 504
GsuI	CTGGAG	1 cut(s)	751
HaeIII	GGCC	2 cut(s)	584, 631
HapII	CCGG	2 cut(s)	738, 865
Hin1II	CATG	2 cut(s)	191, 714
HincII	GTYRAC	1 cut(s)	842
HindII	GTYRAC	1 cut(s)	842
HindIII	AAGCTT	1 cut(s)	16
HinfI	GANTC	4 cut(s)	11, 719, 788, 875
HpaII	CCGG	2 cut(s)	738, 865
HphI	GGTGA	5 cut(s)	207, 236, 270, 734, 787
Hpy166II	GTNNAC	5 cut(s)	227, 342, 456, 773, 842
Hpy188I	TCNGA	5 cut(s)	144, 204, 625, 662, 787
Hpy188III	TCNNGA	1 cut(s)	865
Hpy8I	GTNNAC	5 cut(s)	227, 342, 456, 773, 842
Hpy99I	CGWCG	1 cut(s)	698
HpyAV	CCTTC	6 cut(s)	336, 352, 373, 450, 466, 487
HpyCH4III	ACNGT	3 cut(s)	210, 559, 762
HpyCH4V	TGCA	3 cut(s)	82, 272, 817
HpyF10VI	GCNNNNNNNGC	3 cut(s)	572, 581, 704
HpyF3I	CTNAG	6 cut(s)	51, 111, 265, 372, 486, 784
Hsp92II	CATG	2 cut(s)	191, 714
Kpn2I	TCCGGA	1 cut(s)	864
Kzo9I	GATC	6 cut(s)	88, 261, 676, 747, 776, 829
LmnI	GCTCC	2 cut(s)	571, 770
Lsp1109I	GCAGC	4 cut(s)	42, 45, 376, 490
LweI	GCATC	3 cut(s)	376, 490, 826
MaeI	CTAG	1 cut(s)	618
MaeIII	GTNAC	4 cut(s)	121, 213, 276, 740
MalI	GATC	6 cut(s)	90, 263, 678, 749, 778, 831
MboI	GATC	6 cut(s)	88, 261, 676, 747, 776, 829
MboII	GAAGA	8 cut(s)	131, 367, 481, 533, 582, 677, 684, 812
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	2 cut(s)	767, 785
MluCI	AATT	2 cut(s)	239, 256
MluI	ACGCGT	1 cut(s)	166
MlyI	GAGTC	3 cut(s)	5, 713, 782
MmeI	TCCRAC	2 cut(s)	571, 685
MroI	TCCGGA	1 cut(s)	864
MslI	CAYNNNNRTG	2 cut(s)	192, 778
MspI	CCGG	2 cut(s)	738, 865
MspR9I	CCNGG	1 cut(s)	716
MvaI	CCWGG	1 cut(s)	716
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	3 cut(s)	572, 581, 704
NdeII	GATC	6 cut(s)	88, 261, 676, 747, 776, 829
NlaIII	CATG	2 cut(s)	191, 714
NlaIV	GGNNCC	2 cut(s)	159, 427
NmuCI	GTSAC	4 cut(s)	121, 213, 276, 740
OliI	CACNNNNGTG	1 cut(s)	778
PfeI	GAWTC	1 cut(s)	875
PkrI	GCNGC	4 cut(s)	57, 60, 391, 505
Ple19I	CGATCG	1 cut(s)	779
PleI	GAGTC	3 cut(s)	5, 713, 782
PpsI	GAGTC	3 cut(s)	5, 713, 782
PpuMI	RGGWCCY	1 cut(s)	425
PshAI	GACNNNNGTC	1 cut(s)	560
Psp5II	RGGWCCY	1 cut(s)	425
Psp6I	CCWGG	1 cut(s)	714
PspEI	GGTNACC	1 cut(s)	740
PspGI	CCWGG	1 cut(s)	714
PspN4I	GGNNCC	2 cut(s)	159, 427
PspPI	GGNCC	2 cut(s)	244, 425
PspPPI	RGGWCCY	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	261
PvuI	CGATCG	1 cut(s)	779
RseI	CAYNNNNRTG	2 cut(s)	192, 778
SatI	GCNGC	4 cut(s)	56, 59, 390, 504
Sau3AI	GATC	6 cut(s)	88, 261, 676, 747, 776, 829
Sau96I	GGNCC	2 cut(s)	244, 425
SchI	GAGTC	3 cut(s)	5, 713, 782
ScrFI	CCNGG	1 cut(s)	716
SduI	GDGCHC	2 cut(s)	767, 785
SfaNI	GCATC	3 cut(s)	376, 490, 826
SinI	GGWCC	2 cut(s)	244, 425
SmiMI	CAYNNNNRTG	2 cut(s)	192, 778
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	2 cut(s)	239, 256
SsiI	CCGC	3 cut(s)	61, 604, 833
SspMI	CTAG	1 cut(s)	618
StyD4I	CCNGG	1 cut(s)	714
StyI	CCWWGG	1 cut(s)	798
TaaI	ACNGT	3 cut(s)	210, 559, 762
TaqI	TCGA	5 cut(s)	236, 253, 333, 447, 828
TaqII	GACCGA	1 cut(s)	836
TasI	AATT	2 cut(s)	239, 256
TfiI	GAWTC	1 cut(s)	875
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	4 cut(s)	121, 213, 276, 740
TseI	GCWGC	4 cut(s)	55, 58, 389, 503
Tsp45I	GTSAC	4 cut(s)	121, 213, 276, 740
TspDTI	ATGAA	3 cut(s)	368, 482, 699
TspRI	CASTG	1 cut(s)	279
VpaK11BI	GGWCC	2 cut(s)	244, 425
XspI	CTAG	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.