Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0014816

Physical Location & Seq

Genomic Coordinates Reverse (-)

16980227 .. 16985494

Gene Structure 5268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00013810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTTCAAGCTTAATAGAGGGGAGTCCCACCCCATCCCCATGAAAGGGGCTATGAGGTTGCGAGTCGCTCTACACCTGGCACAAGCTTTGGTGTATTGCAGCAGCAAAGGACGGCCATTGTACTATGATCTTAATTCTTCTAGAGTCCTGTTTGATCAGAGAGCTACCGTATTTATTGATATATTTCATCTTGCTGAGACTAAAATGAATTCCAAGAGACCTCAGTTGAGGCATTTGGATTGGATGACTAGCTTAATGGACATATCTTTCGATTTGGCAGGAAGAGTGATGCCAGAAAGTTTGATTTACAACTTTGGGACCTTACTGCTTGATGGCATACCCCAGCAAGACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

118

Amino Acids

13.6

Weight (kDa)

9.25

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014816)

Species	Orthologous Gene IDs
malus_domestica	MD01G1088500.v1.1 MD05G1020300.v1.1 MD11G1085100.v1.1
prunus_persica	Prupe.6G065500_v2.0.a1 Prupe.6G065500_v2.0.a1
pyrus_communis	pycom01g08590 pycom07g06710 pycom12g14880
rosa_multiflora	Rmu_co8319927.1_g000001 Rmu_sc0000015.1_g000004
rosa_roxburghii	Rroxscaffold_1G00013800 Rroxscaffold_1G00013810
rosa_rugosa	Rorug05G0383900
rosa_samantha	Rh3DG134600 Rh5BG460400 Rh5CG482700 Rh5DG475500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	208
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	44, 45
AflIII	ACRYGT	1 cut(s)	351
AgsI	TTSAA	1 cut(s)	7
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	4 cut(s)	10, 86, 164, 252
AluI	AGCT	4 cut(s)	10, 86, 164, 252
Alw26I	GTCTC	2 cut(s)	191, 211
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	2 cut(s)	99, 102
ApoI	RAATTY	1 cut(s)	208
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
AspS9I	GGNCC	1 cut(s)	318
AvaII	GGWCC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	111, 114
BccI	CCATC	2 cut(s)	41, 326
BceAI	ACGGC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	77
BclI	TGATCA	1 cut(s)	154
BcoDI	GTCTC	2 cut(s)	191, 211
BfaI	CTAG	2 cut(s)	141, 249
BisI	GCNGC	2 cut(s)	100, 103
BlsI	GCNGC	2 cut(s)	101, 104
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	318
BmgT120I	GGNCC	1 cut(s)	318
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 45
BseBI	CCWGG	1 cut(s)	77
BseGI	GGATG	2 cut(s)	33, 249
BseLI	CCNNNNNNNGG	2 cut(s)	44, 45
BseMII	CTCAG	2 cut(s)	186, 236
BseXI	GCAGC	2 cut(s)	111, 114
BseYI	CCCAGC	1 cut(s)	342
BshFI	GGCC	1 cut(s)	115
BslFI	GGGAC	2 cut(s)	10, 331
BslI	CCNNNNNNNGG	2 cut(s)	44, 45
BsmAI	GTCTC	2 cut(s)	191, 211
BsmFI	GGGAC	2 cut(s)	10, 331
BsnI	GGCC	1 cut(s)	115
Bso31I	GGTCTC	1 cut(s)	211
Bsp143I	GATC	2 cut(s)	127, 154
BspANI	GGCC	1 cut(s)	115
BspCNI	CTCAG	2 cut(s)	187, 235
BspLI	GGNNCC	1 cut(s)	319
BspTNI	GGTCTC	1 cut(s)	211
BssMI	GATC	2 cut(s)	127, 154
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	1 cut(s)	277
BstDEI	CTNAG	2 cut(s)	195, 222
BstF5I	GGATG	2 cut(s)	33, 249
BstKTI	GATC	2 cut(s)	130, 157
BstMAI	GTCTC	2 cut(s)	191, 211
BstMBI	GATC	2 cut(s)	127, 154
BstNI	CCWGG	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	111, 114
BsuRI	GGCC	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	33, 249
Cfr13I	GGNCC	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	2 cut(s)	40, 352
CviJI	RGCY	6 cut(s)	10, 50, 86, 115, 164, 252
CviKI_1	RGCY	6 cut(s)	10, 50, 86, 115, 164, 252
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	2 cut(s)	195, 222
DpnI	GATC	2 cut(s)	129, 156
DpnII	GATC	2 cut(s)	127, 154
EaeI	YGGCCR	1 cut(s)	113
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	318
EcoRI	GAATTC	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	75
FaeI	CATG	2 cut(s)	43, 355
FaiI	YATR	7 cut(s)	41, 53, 126, 182, 263, 338, 353
FaqI	GGGAC	2 cut(s)	10, 331
FatI	CATG	2 cut(s)	39, 351
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	2 cut(s)	100, 103
FokI	GGATG	2 cut(s)	20, 256
Fsp4HI	GCNGC	2 cut(s)	100, 103
FspBI	CTAG	2 cut(s)	141, 249
GluI	GCNGC	2 cut(s)	100, 103
GsaI	CCCAGC	1 cut(s)	346
HaeIII	GGCC	1 cut(s)	115
Hin1II	CATG	2 cut(s)	43, 355
HindIII	AAGCTT	2 cut(s)	8, 84
HinfI	GANTC	3 cut(s)	23, 63, 144
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	1 cut(s)	141
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	1 cut(s)	99
HpyF3I	CTNAG	2 cut(s)	195, 222
Hsp92II	CATG	2 cut(s)	43, 355
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	127, 154
LpnPI	CCDG	5 cut(s)	62, 89, 161, 264, 306
Lsp1109I	GCAGC	2 cut(s)	111, 114
LweI	GCATC	1 cut(s)	279
MaeI	CTAG	2 cut(s)	141, 249
MalI	GATC	2 cut(s)	129, 156
MboI	GATC	2 cut(s)	127, 154
MboII	GAAGA	2 cut(s)	129, 294
MluCI	AATT	2 cut(s)	133, 208
MlyI	GAGTC	3 cut(s)	32, 72, 153
MnlI	CCTC	4 cut(s)	11, 48, 222, 231
MseI	TTAA	3 cut(s)	12, 132, 254
MslI	CAYNNNNRTG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
NdeII	GATC	2 cut(s)	127, 154
NlaIII	CATG	2 cut(s)	43, 355
NlaIV	GGNNCC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	355
PciI	ACATGT	1 cut(s)	351
PkrI	GCNGC	2 cut(s)	101, 104
PleI	GAGTC	3 cut(s)	31, 71, 152
PpsI	GAGTC	3 cut(s)	31, 71, 152
PpuMI	RGGWCCY	1 cut(s)	318
PscI	ACATGT	1 cut(s)	351
Psp5II	RGGWCCY	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	319
PspPI	GGNCC	1 cut(s)	318
PspPPI	RGGWCCY	1 cut(s)	318
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	38
SaqAI	TTAA	3 cut(s)	12, 132, 254
SatI	GCNGC	2 cut(s)	100, 103
Sau3AI	GATC	2 cut(s)	127, 154
Sau96I	GGNCC	1 cut(s)	318
SchI	GAGTC	3 cut(s)	32, 72, 153
ScrFI	CCNGG	1 cut(s)	77
SetI	ASST	8 cut(s)	12, 59, 78, 88, 166, 223, 254, 323
SfaNI	GCATC	1 cut(s)	279
SinI	GGWCC	1 cut(s)	318
SmiMI	CAYNNNNRTG	1 cut(s)	38
Sse9I	AATT	2 cut(s)	133, 208
SspMI	CTAG	2 cut(s)	141, 249
StyD4I	CCNGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	270
TasI	AATT	2 cut(s)	133, 208
TatI	WGTACW	1 cut(s)	120
Tru1I	TTAA	3 cut(s)	12, 132, 254
Tru9I	TTAA	3 cut(s)	12, 132, 254
TseI	GCWGC	2 cut(s)	99, 102
TspDTI	ATGAA	3 cut(s)	56, 176, 221
VpaK11BI	GGWCC	1 cut(s)	318
XapI	RAATTY	1 cut(s)	208
XbaI	TCTAGA	1 cut(s)	140
XceI	RCATGY	1 cut(s)	355
XspI	CTAG	2 cut(s)	141, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.