Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0014816

Physical Location & Seq

Genomic Coordinates Reverse (-)

52109502 .. 52110296

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0383900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGTAGATATTCGGACCCAATTGGGTTGGCGTAATGCTTTTTCAGTTCCTTGTAAAATTGTACAGAAGAATAAGGGTAAGAGAGTTGGCAGGTCTGGTGGTCTTTGTATTTTGTGGAATGAGGATTTGACAGTTTCTCTCCGGAGCTACTCCGATAATCATATTGATGTAGTTGTCGGGGAGGCCTCGAGTGCGAAAAAATGGAGGTTTACAGGTATTTATGGTTGTCCAAAAGTGGAGGATAGACACTTGACGTGGTCTCTCATCAAAACCCTAGGTTTGCAGTGTTCTTTGCCTTGGGTGATAGGTGGTGACTTTAACGAAATCCTGTATAACTGGGAGAAGGAAAGGGGTCCGCTACGCTGTGATAGAAAAATGGATGGTTTTCGAGATGTCGTAGATGTCTTTTCTTTGAAGGACATTGGGTTCACAGGGCCGTGTTTCACGTGGAAAGGGAAGAGGGGTGGAGAGATGATAAAGTGGTTTCTTGTATCCCCAAGTTGGTATGATCTGTTCCCGGCTTCCAGGATTATTCATCAACTACCCAACAAGTCTGACCACCTCCCCATCATGTTGGAGGTTAGAGAGTGCAGACCCAAGAAAAAGAGGAAGAGGAAAAAACGTTTCAAGTTTGAAGAATTATGGCTTAGGGATGATGAATGCGGTAAGGTGGTGGAACAAGGTTGGAGTAGTGTTGGTGGTGCTGAACCTTTCTCTACTGTGTGCCATAAAATAAGGGCGACAATGATATTGTTGCTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

254

Amino Acids

29.38

Weight (kDa)

9.46

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014816)

Species	Orthologous Gene IDs
malus_domestica	MD01G1088500.v1.1 MD05G1020300.v1.1 MD11G1085100.v1.1
prunus_persica	Prupe.6G065500_v2.0.a1 Prupe.6G065500_v2.0.a1
pyrus_communis	pycom01g08590 pycom07g06710 pycom12g14880
rosa_multiflora	Rmu_co8319927.1_g000001 Rmu_sc0000015.1_g000004
rosa_roxburghii	Rroxscaffold_1G00013800 Rroxscaffold_1G00013810
rosa_rugosa	Rorug05G0383900
rosa_samantha	Rh3DG134600 Rh5BG460400 Rh5CG482700 Rh5DG475500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	81
AccIII	TCCGGA	1 cut(s)	141
AciI	CCGC	2 cut(s)	356, 663
AclI	AACGTT	1 cut(s)	622
AcvI	CACGTG	1 cut(s)	447
AfaI	GTAC	1 cut(s)	63
AfiI	CCNNNNNNNGG	1 cut(s)	501
AgsI	TTSAA	3 cut(s)	415, 628, 635
AjiI	CACGTC	1 cut(s)	255
AjnI	CCWGG	1 cut(s)	524
AloI	GAACNNNNNNTCC	2 cut(s)	410, 442
AluBI	AGCT	1 cut(s)	147
AluI	AGCT	1 cut(s)	147
Alw26I	GTCTC	1 cut(s)	264
Ama87I	CYCGRG	1 cut(s)	187
Aor13HI	TCCGGA	1 cut(s)	141
AoxI	GGCC	2 cut(s)	183, 434
AspA2I	CCTAGG	1 cut(s)	274
AspS9I	GGNCC	3 cut(s)	15, 353, 434
AsuC2I	CCSGG	1 cut(s)	518
AsuHPI	GGTGA	2 cut(s)	313, 323
AvaI	CYCGRG	1 cut(s)	187
AvaII	GGWCC	2 cut(s)	15, 353
AvrII	CCTAGG	1 cut(s)	274
BbrPI	CACGTG	1 cut(s)	447
BccI	CCATC	2 cut(s)	374, 575
BceAI	ACGGC	1 cut(s)	421
BciT130I	CCWGG	1 cut(s)	526
BciVI	GTATCC	1 cut(s)	502
BcnI	CCSGG	1 cut(s)	518
BcoDI	GTCTC	1 cut(s)	264
BfaI	CTAG	1 cut(s)	275
BfuAI	ACCTGC	1 cut(s)	81
BfuI	GTATCC	1 cut(s)	502
BlnI	CCTAGG	1 cut(s)	274
Bme1390I	CCNGG	2 cut(s)	518, 526
Bme18I	GGWCC	2 cut(s)	15, 353
BmeT110I	CYCGRG	1 cut(s)	187
BmgBI	CACGTC	1 cut(s)	255
BmgT120I	GGNCC	3 cut(s)	15, 353, 434
BmiI	GGNNCC	2 cut(s)	17, 354
BmrFI	CCNGG	2 cut(s)	518, 526
BmrI	ACTGGG	1 cut(s)	346
BmuI	ACTGGG	1 cut(s)	346
Bpu10I	CCTNAGC	1 cut(s)	647
BpuMI	CCSGG	1 cut(s)	518
BsaAI	YACGTR	1 cut(s)	447
BsaI	GGTCTC	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	274, 296
BsaWI	WCCGGW	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	1 cut(s)	501
Bse1I	ACTGG	1 cut(s)	341
BseAI	TCCGGA	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	526
BseDI	CCNNGG	2 cut(s)	274, 296
BseGI	GGATG	2 cut(s)	385, 658
BseLI	CCNNNNNNNGG	1 cut(s)	501
BseNI	ACTGG	1 cut(s)	341
BsgI	GTGCAG	1 cut(s)	610
BshFI	GGCC	2 cut(s)	185, 436
BsiHKCI	CYCGRG	1 cut(s)	187
BsiSI	CCGG	2 cut(s)	142, 518
BslI	CCNNNNNNNGG	1 cut(s)	501
BsmAI	GTCTC	1 cut(s)	264
BsmI	GAATGC	1 cut(s)	665
BsnI	GGCC	2 cut(s)	185, 436
Bso31I	GGTCTC	1 cut(s)	264
BsoBI	CYCGRG	1 cut(s)	187
Bsp13I	TCCGGA	1 cut(s)	141
Bsp1407I	TGTACA	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	508
BspACI	CCGC	2 cut(s)	356, 663
BspANI	GGCC	2 cut(s)	185, 436
BspEI	TCCGGA	1 cut(s)	141
BspLI	GGNNCC	2 cut(s)	17, 354
BspMI	ACCTGC	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	264
BsrGI	TGTACA	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	2 cut(s)	274, 296
BssMI	GATC	1 cut(s)	508
BssT1I	CCWWGG	2 cut(s)	274, 296
Bst2UI	CCWGG	1 cut(s)	526
Bst4CI	ACNGT	2 cut(s)	133, 721
Bst6I	CTCTTC	2 cut(s)	452, 605
BstAUI	TGTACA	1 cut(s)	61
BstBAI	YACGTR	1 cut(s)	447
BstDEI	CTNAG	1 cut(s)	647
BstF5I	GGATG	2 cut(s)	385, 658
BstKTI	GATC	1 cut(s)	511
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	1 cut(s)	508
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNI	CCWGG	1 cut(s)	526
BstSCI	CCNGG	2 cut(s)	516, 524
BstXI	CCANNNNNNTGG	1 cut(s)	574
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	2 cut(s)	185, 436
BtrI	CACGTC	1 cut(s)	255
BtsCI	GGATG	2 cut(s)	385, 658
BtsI	GCAGTG	1 cut(s)	290
BtsIMutI	CAGTG	1 cut(s)	290
BveI	ACCTGC	1 cut(s)	81
Cfr13I	GGNCC	3 cut(s)	15, 353, 434
Csp6I	GTAC	1 cut(s)	62
CviAII	CATG	1 cut(s)	571
CviJI	RGCY	5 cut(s)	147, 185, 436, 521, 646
CviKI_1	RGCY	5 cut(s)	147, 185, 436, 521, 646
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	1 cut(s)	647
DpnI	GATC	1 cut(s)	510
DpnII	GATC	1 cut(s)	508
Eam1104I	CTCTTC	2 cut(s)	452, 605
EarI	CTCTTC	2 cut(s)	452, 605
Eco130I	CCWWGG	2 cut(s)	274, 296
Eco147I	AGGCCT	1 cut(s)	185
Eco31I	GGTCTC	1 cut(s)	264
Eco47I	GGWCC	2 cut(s)	15, 353
Eco72I	CACGTG	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	524
EcoT14I	CCWWGG	2 cut(s)	274, 296
ErhI	CCWWGG	2 cut(s)	274, 296
FaeI	CATG	1 cut(s)	574
FaiI	YATR	7 cut(s)	162, 222, 333, 507, 572, 643, 729
FatI	CATG	1 cut(s)	570
FokI	GGATG	2 cut(s)	392, 665
FspBI	CTAG	1 cut(s)	275
HaeIII	GGCC	2 cut(s)	185, 436
HapII	CCGG	2 cut(s)	142, 518
Hin1II	CATG	1 cut(s)	574
HpaII	CCGG	2 cut(s)	142, 518
HphI	GGTGA	2 cut(s)	313, 323
Hpy166II	GTNNAC	2 cut(s)	210, 429
Hpy188I	TCNGA	3 cut(s)	15, 154, 556
Hpy188III	TCNNGA	2 cut(s)	142, 389
Hpy8I	GTNNAC	2 cut(s)	210, 429
HpyAV	CCTTC	2 cut(s)	337, 409
HpyCH4III	ACNGT	2 cut(s)	133, 721
HpyCH4IV	ACGT	3 cut(s)	254, 446, 622
HpyCH4V	TGCA	2 cut(s)	283, 591
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	1 cut(s)	647
HpySE526I	ACGT	3 cut(s)	254, 446, 622
Hsp92II	CATG	1 cut(s)	574
Kpn2I	TCCGGA	1 cut(s)	141
Kzo9I	GATC	1 cut(s)	508
LmnI	GCTCC	1 cut(s)	144
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	3 cut(s)	254, 446, 622
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	1 cut(s)	510
MboI	GATC	1 cut(s)	508
MboII	GAAGA	4 cut(s)	79, 469, 622, 647
MfeI	CAATTG	1 cut(s)	20
MluCI	AATT	3 cut(s)	20, 57, 638
MmeI	TCCRAC	2 cut(s)	555, 665
MroI	TCCGGA	1 cut(s)	141
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	165
MspI	CCGG	2 cut(s)	142, 518
MspR9I	CCNGG	2 cut(s)	518, 526
MunI	CAATTG	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	665
MvaI	CCWGG	1 cut(s)	526
MwoI	GCNNNNNNNGC	1 cut(s)	191
NciI	CCSGG	1 cut(s)	518
NdeII	GATC	1 cut(s)	508
NlaIII	CATG	1 cut(s)	574
NlaIV	GGNNCC	2 cut(s)	17, 354
NmuCI	GTSAC	1 cut(s)	311
PaeR7I	CTCGAG	1 cut(s)	187
PceI	AGGCCT	1 cut(s)	185
PctI	GAATGC	1 cut(s)	665
PflFI	GACNNNGTC	1 cut(s)	256
PfoI	TCCNGGA	1 cut(s)	524
PmaCI	CACGTG	1 cut(s)	447
PmlI	CACGTG	1 cut(s)	447
Ppu21I	YACGTR	1 cut(s)	447
Psp1406I	AACGTT	1 cut(s)	622
Psp6I	CCWGG	1 cut(s)	524
PspCI	CACGTG	1 cut(s)	447
PspGI	CCWGG	1 cut(s)	524
PspN4I	GGNNCC	2 cut(s)	17, 354
PspPI	GGNCC	3 cut(s)	15, 353, 434
PspXI	VCTCGAGB	1 cut(s)	187
PsrI	GAACNNNNNNTAC	2 cut(s)	497, 529
PsyI	GACNNNGTC	1 cut(s)	256
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	318
Sau3AI	GATC	1 cut(s)	508
Sau96I	GGNCC	3 cut(s)	15, 353, 434
ScrFI	CCNGG	2 cut(s)	518, 526
Sfr274I	CTCGAG	1 cut(s)	187
SinI	GGWCC	2 cut(s)	15, 353
SlaI	CTCGAG	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse9I	AATT	3 cut(s)	20, 57, 638
SseBI	AGGCCT	1 cut(s)	185
SsiI	CCGC	2 cut(s)	356, 663
SspMI	CTAG	1 cut(s)	275
StuI	AGGCCT	1 cut(s)	185
StyD4I	CCNGG	2 cut(s)	516, 524
StyI	CCWWGG	2 cut(s)	274, 296
TaaI	ACNGT	2 cut(s)	133, 721
TaiI	ACGT	3 cut(s)	257, 449, 625
TaqI	TCGA	2 cut(s)	188, 388
TasI	AATT	3 cut(s)	20, 57, 638
TatI	WGTACW	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	1 cut(s)	290
TseFI	GTSAC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	2 cut(s)	524, 672
TspRI	CASTG	1 cut(s)	290
Tth111I	GACNNNGTC	1 cut(s)	256
VpaK11BI	GGWCC	2 cut(s)	15, 353
XhoI	CTCGAG	1 cut(s)	187
XmaJI	CCTAGG	1 cut(s)	274
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.