Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0014816

Physical Location & Seq

Genomic Coordinates Forward (+)

75165116 .. 75176513

Gene Structure 11398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG475500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAATTCCAAGGGACCTCAGTTGAGGCATTCGGATTGGATGACTAGCTTAATGGATATATCTTTCGATTTGGCAGGAAGAGTGATGCCAGAAAGTTTGATTTACAACTTTGGGACCTTACTGCTTGATCTGCTTAGAGGCAGGCATACCCCAGCAAACCATGTTCCATCACGCGTTTTGATGGATATTCCACATGGGAATGTGCCTCCGAAACAGTTGTCACCTCTGGGTGAACCTTGCTCGAAATTGGACCTTGCTCGAAATTGGATCTTAGTTGCAGTGTCACCTCCCAACACTTACATATATTCTCTACTTGATGACATCTGCCAAATCCTAGGGATGGATAACGATGCGCCGGAAATGCTGAAAGAAGGCGCATTGTTGGAAGCCATTCAAAACAAAAGAGCTGATAGTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

139

Amino Acids

15.45

Weight (kDa)

5.44

Isoelectric Point (pI)

45.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014816)

Species	Orthologous Gene IDs
malus_domestica	MD01G1088500.v1.1 MD05G1020300.v1.1 MD11G1085100.v1.1
prunus_persica	Prupe.6G065500_v2.0.a1 Prupe.6G065500_v2.0.a1
pyrus_communis	pycom01g08590 pycom07g06710 pycom12g14880
rosa_multiflora	Rmu_co8319927.1_g000001 Rmu_sc0000015.1_g000004
rosa_roxburghii	Rroxscaffold_1G00013800 Rroxscaffold_1G00013810
rosa_rugosa	Rorug05G0383900
rosa_samantha	Rh3DG134600 Rh5BG460400 Rh5CG482700 Rh5DG475500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	174
AclWI	GGATC	1 cut(s)	275
AcsI	RAATTY	1 cut(s)	4
AfiI	CCNNNNNNNGG	1 cut(s)	340
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	1 cut(s)	395
AluBI	AGCT	2 cut(s)	48, 407
AluI	AGCT	2 cut(s)	48, 407
AlwI	GGATC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	4
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
Asp700I	GAANNNNTTC	1 cut(s)	390
AspA2I	CCTAGG	1 cut(s)	334
AspLEI	GCGC	2 cut(s)	355, 377
AspS9I	GGNCC	3 cut(s)	14, 114, 250
AsuHPI	GGTGA	3 cut(s)	213, 242, 276
AvaII	GGWCC	3 cut(s)	14, 114, 250
AvrII	CCTAGG	1 cut(s)	334
BccI	CCATC	3 cut(s)	175, 175, 334
BfaI	CTAG	2 cut(s)	45, 335
BlnI	CCTAGG	1 cut(s)	334
Bme18I	GGWCC	3 cut(s)	14, 114, 250
BmgT120I	GGNCC	3 cut(s)	14, 114, 250
BmiI	GGNNCC	2 cut(s)	15, 115
BmsI	GCATC	2 cut(s)	75, 340
BsaJI	CCNNGG	2 cut(s)	9, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
BseDI	CCNNGG	2 cut(s)	9, 334
BseGI	GGATG	2 cut(s)	45, 345
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMII	CTCAG	1 cut(s)	32
BseYI	CCCAGC	1 cut(s)	151
Bsh1236I	CGCG	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	356
BslFI	GGGAC	2 cut(s)	27, 127
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmFI	GGGAC	2 cut(s)	27, 127
BsmI	GAATGC	1 cut(s)	28
Bsp143I	GATC	2 cut(s)	127, 267
BspCNI	CTCAG	1 cut(s)	31
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	2 cut(s)	15, 115
BspPI	GGATC	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	9, 334
BssMI	GATC	2 cut(s)	127, 267
BssT1I	CCWWGG	2 cut(s)	9, 334
Bst4CI	ACNGT	1 cut(s)	216
Bst6I	CTCTTC	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	3 cut(s)	18, 134, 271
BstF5I	GGATG	2 cut(s)	45, 345
BstFNI	CGCG	1 cut(s)	174
BstHHI	GCGC	2 cut(s)	355, 377
BstKTI	GATC	2 cut(s)	130, 270
BstMBI	GATC	2 cut(s)	127, 267
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 361
BstUI	CGCG	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	45, 345
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	1 cut(s)	143
CfoI	GCGC	2 cut(s)	355, 377
Cfr13I	GGNCC	3 cut(s)	14, 114, 250
CviAII	CATG	2 cut(s)	161, 194
CviJI	RGCY	3 cut(s)	48, 389, 407
CviKI_1	RGCY	3 cut(s)	48, 389, 407
DdeI	CTNAG	3 cut(s)	18, 134, 271
DpnI	GATC	2 cut(s)	129, 269
DpnII	GATC	2 cut(s)	127, 267
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Eco130I	CCWWGG	2 cut(s)	9, 334
Eco47I	GGWCC	3 cut(s)	14, 114, 250
EcoO109I	RGGNCCY	2 cut(s)	14, 114
EcoRI	GAATTC	1 cut(s)	4
EcoT14I	CCWWGG	2 cut(s)	9, 334
ErhI	CCWWGG	2 cut(s)	9, 334
FaeI	CATG	2 cut(s)	164, 197
FaiI	YATR	6 cut(s)	59, 147, 162, 195, 302, 304
FaqI	GGGAC	2 cut(s)	27, 127
FatI	CATG	2 cut(s)	160, 193
FokI	GGATG	2 cut(s)	52, 352
FspBI	CTAG	2 cut(s)	45, 335
GlaI	GCGC	2 cut(s)	354, 376
GsaI	CCCAGC	1 cut(s)	155
HapII	CCGG	1 cut(s)	356
HhaI	GCGC	2 cut(s)	355, 377
Hin1II	CATG	2 cut(s)	164, 197
Hin6I	GCGC	2 cut(s)	353, 375
HinP1I	GCGC	2 cut(s)	353, 375
HpaII	CCGG	1 cut(s)	356
HphI	GGTGA	3 cut(s)	213, 242, 276
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	2 cut(s)	34, 210
Hpy8I	GTNNAC	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	365
HpyCH4III	ACNGT	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 361
HpyF3I	CTNAG	3 cut(s)	18, 134, 271
Hsp92II	CATG	2 cut(s)	164, 197
HspAI	GCGC	2 cut(s)	353, 375
Kzo9I	GATC	2 cut(s)	127, 267
LpnPI	CCDG	6 cut(s)	60, 102, 127, 165, 212, 369
LweI	GCATC	2 cut(s)	75, 340
MaeI	CTAG	2 cut(s)	45, 335
MaeIII	GTNAC	2 cut(s)	219, 282
MalI	GATC	2 cut(s)	129, 269
MboI	GATC	2 cut(s)	127, 267
MboII	GAAGA	1 cut(s)	90
MflI	RGATCY	1 cut(s)	267
MluCI	AATT	3 cut(s)	4, 245, 262
MluI	ACGCGT	1 cut(s)	172
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	6 cut(s)	18, 27, 131, 216, 234, 297
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	1 cut(s)	50
MslI	CAYNNNNRTG	1 cut(s)	198
MspI	CCGG	1 cut(s)	356
Mva1269I	GAATGC	1 cut(s)	28
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	130, 361
NdeII	GATC	2 cut(s)	127, 267
NlaIII	CATG	2 cut(s)	164, 197
NlaIV	GGNNCC	2 cut(s)	15, 115
NmuCI	GTSAC	2 cut(s)	219, 282
PctI	GAATGC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	390
PpuMI	RGGWCCY	2 cut(s)	14, 114
Psp5II	RGGWCCY	2 cut(s)	14, 114
PspFI	CCCAGC	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	15, 115
PspPI	GGNCC	3 cut(s)	14, 114, 250
PspPPI	RGGWCCY	2 cut(s)	14, 114
PsuI	RGATCY	1 cut(s)	267
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	50
Sau3AI	GATC	2 cut(s)	127, 267
Sau96I	GGNCC	3 cut(s)	14, 114, 250
SetI	ASST	8 cut(s)	19, 50, 119, 226, 238, 255, 289, 409
SfaNI	GCATC	2 cut(s)	75, 340
SinI	GGWCC	3 cut(s)	14, 114, 250
SmiMI	CAYNNNNRTG	1 cut(s)	198
Sse9I	AATT	3 cut(s)	4, 245, 262
SspMI	CTAG	2 cut(s)	45, 335
StyI	CCWWGG	2 cut(s)	9, 334
TaaI	ACNGT	1 cut(s)	216
TaqI	TCGA	3 cut(s)	66, 242, 259
TasI	AATT	3 cut(s)	4, 245, 262
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	1 cut(s)	285
TseFI	GTSAC	2 cut(s)	219, 282
Tsp45I	GTSAC	2 cut(s)	219, 282
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	285
VpaK11BI	GGWCC	3 cut(s)	14, 114, 250
XapI	RAATTY	1 cut(s)	4
XmaJI	CCTAGG	1 cut(s)	334
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	2 cut(s)	45, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.