Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0014816

Physical Location & Seq

Genomic Coordinates Reverse (-)

11429059 .. 11431239

Gene Structure 2181 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG134600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTCCTTTTTGAAGGCACTAGATCTTATTCGTGGCAAGAATTTCCTGATGCTGATGGATTCGGCTCTGGAGGGTAATTTCTCAAATGATGATGGAACTGAGTTAGTACGCTTGGCTTCCCGTTGTCTGCAATATGAAGCTCGTGAGAGGCCTAATGCGAAATCCCTTGCCACTGCTCTTATGTCACTTCAGAAAGAAACAGAGGTTGCATCCTATGTTTTGATGGGTATCCCACAAGAAACTGCATCGTCAACACAGCCACTGTCATTAACACCTTTTGGTGAAGCTTGTTTGAGAATGGATCTGACAGCCATACATGAAATACTGGAGAAGAATGGATACAAGGATGATGAGGGAATTGCTAATGAGCTATCTTTCCAGCTGTGGACTAATCAAATGCAGGAGACCTTGGATTCTAAGAAGAGTGCAGATTCTGCTTTTAGAGCGAAAGACTACGCAACTGCAATTGATTCCTATACACAATTCATTGATTGTGGGACAATGGTATCACCAACGGTGTATGCTCGGCGTTGTCTGTCATACTTGATGAATGATATGGCACAAGAAGCCCTTGGGGATGCTATGCAAGCCCAGGTGATTTCTCCCGAGTGGCCCTGTGCTTTATATCTTCAAGCAGCTTGCCTGTTCAAGCTTGGAATGGACAATGATGCACAAGAAACGCTCAAAGATGGCACAAACTTGGAAGCCAAAAAGAACAGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

241

Amino Acids

26.81

Weight (kDa)

4.65

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	95 - 212	1.1e-63	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014816)

Species	Orthologous Gene IDs
malus_domestica	MD01G1088500.v1.1 MD05G1020300.v1.1 MD11G1085100.v1.1
prunus_persica	Prupe.6G065500_v2.0.a1 Prupe.6G065500_v2.0.a1
pyrus_communis	pycom01g08590 pycom07g06710 pycom12g14880
rosa_multiflora	Rmu_co8319927.1_g000001 Rmu_sc0000015.1_g000004
rosa_roxburghii	Rroxscaffold_1G00013800 Rroxscaffold_1G00013810
rosa_rugosa	Rorug05G0383900
rosa_samantha	Rh3DG134600 Rh5BG460400 Rh5CG482700 Rh5DG475500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	309
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	1 cut(s)	108
AgsI	TTSAA	3 cut(s)	13, 632, 649
AjnI	CCWGG	1 cut(s)	591
AluBI	AGCT	6 cut(s)	140, 287, 370, 382, 638, 652
AluI	AGCT	6 cut(s)	140, 287, 370, 382, 638, 652
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	1 cut(s)	309
AlwNI	CAGNNNCTG	2 cut(s)	262, 434
Ama87I	CYCGRG	1 cut(s)	605
AoxI	GGCC	2 cut(s)	149, 611
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	1 cut(s)	40
AspS9I	GGNCC	1 cut(s)	612
AsuHPI	GGTGA	3 cut(s)	293, 501, 607
AvaI	CYCGRG	1 cut(s)	605
BaeI	ACNNNNGTAYC	2 cut(s)	489, 522
BarI	GAAGNNNNNNTAC	2 cut(s)	323, 355
BauI	CACGAG	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	647
BccI	CCATC	4 cut(s)	49, 86, 217, 683
BciT130I	CCWGG	1 cut(s)	593
BciVI	GTATCC	2 cut(s)	239, 332
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	1 cut(s)	20
BfuI	GTATCC	2 cut(s)	239, 332
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	1 cut(s)	636
BlsI	GCNGC	1 cut(s)	637
Bme1390I	CCNGG	1 cut(s)	593
BmeT110I	CYCGRG	1 cut(s)	605
BmgT120I	GGNCC	1 cut(s)	612
BmrFI	CCNGG	1 cut(s)	593
BmsI	GCATC	5 cut(s)	39, 218, 254, 568, 658
BpmI	CTGGAG	2 cut(s)	89, 347
BsaBI	GATNNNNATC	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	3 cut(s)	408, 571, 591
Bse1I	ACTGG	1 cut(s)	330
Bse8I	GATNNNNATC	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	593
BseDI	CCNNGG	3 cut(s)	408, 571, 591
BseGI	GGATG	3 cut(s)	209, 352, 583
BseJI	GATNNNNATC	1 cut(s)	227
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	330
BseXI	GCAGC	1 cut(s)	647
BsgI	GTGCAG	1 cut(s)	447
BshFI	GGCC	2 cut(s)	151, 613
BsiHKCI	CYCGRG	1 cut(s)	605
BslFI	GGGAC	1 cut(s)	511
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	511
BsnI	GGCC	2 cut(s)	151, 613
Bso31I	GGTCTC	1 cut(s)	398
BsoBI	CYCGRG	1 cut(s)	605
Bsp143I	GATC	2 cut(s)	22, 301
BspANI	GGCC	2 cut(s)	151, 613
BspCNI	CTCAG	1 cut(s)	91
BspPI	GGATC	1 cut(s)	309
BspTNI	GGTCTC	1 cut(s)	398
BsrI	ACTGG	1 cut(s)	330
BssECI	CCNNGG	3 cut(s)	408, 571, 591
BssMI	GATC	2 cut(s)	22, 301
BssSI	CACGAG	1 cut(s)	141
BssT1I	CCWWGG	2 cut(s)	408, 571
Bst2BI	CACGAG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	2 cut(s)	264, 517
Bst6I	CTCTTC	1 cut(s)	416
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	588, 640
BstDEI	CTNAG	2 cut(s)	99, 417
BstF5I	GGATG	3 cut(s)	209, 352, 583
BstKTI	GATC	2 cut(s)	25, 304
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	2 cut(s)	22, 301
BstMWI	GCNNNNNNNGC	4 cut(s)	434, 443, 566, 587
BstNI	CCWGG	1 cut(s)	593
BstSCI	CCNGG	1 cut(s)	591
BstV1I	GCAGC	1 cut(s)	647
BstX2I	RGATCY	2 cut(s)	22, 301
BstYI	RGATCY	2 cut(s)	22, 301
BsuI	GTATCC	2 cut(s)	239, 332
BsuRI	GGCC	2 cut(s)	151, 613
BtsCI	GGATG	3 cut(s)	209, 352, 583
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	2 cut(s)	171, 260
Cac8I	GCNNGC	2 cut(s)	588, 640
CaiI	CAGNNNCTG	2 cut(s)	262, 434
Cfr13I	GGNCC	1 cut(s)	612
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	1 cut(s)	317
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	2 cut(s)	99, 417
DpnI	GATC	2 cut(s)	24, 303
DpnII	GATC	2 cut(s)	22, 301
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
Eco130I	CCWWGG	2 cut(s)	408, 571
Eco147I	AGGCCT	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	591
EcoT14I	CCWWGG	2 cut(s)	408, 571
ErhI	CCWWGG	2 cut(s)	408, 571
FaeI	CATG	1 cut(s)	320
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FaqI	GGGAC	1 cut(s)	511
FatI	CATG	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	636
FokI	GGATG	3 cut(s)	196, 359, 590
Fsp4HI	GCNGC	1 cut(s)	636
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	1 cut(s)	636
GsuI	CTGGAG	2 cut(s)	89, 347
HaeIII	GGCC	2 cut(s)	151, 613
Hin1II	CATG	1 cut(s)	320
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HindIII	AAGCTT	2 cut(s)	285, 650
HinfI	GANTC	4 cut(s)	59, 413, 431, 470
HphI	GGTGA	3 cut(s)	293, 501, 607
Hpy166II	GTNNAC	2 cut(s)	252, 387
Hpy188I	TCNGA	2 cut(s)	192, 306
Hpy188III	TCNNGA	4 cut(s)	46, 68, 143, 605
Hpy8I	GTNNAC	2 cut(s)	252, 387
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	2 cut(s)	264, 517
HpyCH4V	TGCA	8 cut(s)	130, 209, 245, 400, 428, 464, 586, 671
HpyF10VI	GCNNNNNNNGC	4 cut(s)	434, 443, 566, 587
HpyF3I	CTNAG	2 cut(s)	99, 417
Hsp92II	CATG	1 cut(s)	320
Kzo9I	GATC	2 cut(s)	22, 301
LpnPI	CCDG	9 cut(s)	53, 59, 311, 386, 392, 578, 605, 628, 656
Lsp1109I	GCAGC	1 cut(s)	647
LweI	GCATC	5 cut(s)	39, 218, 254, 568, 658
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	2 cut(s)	24, 303
MboI	GATC	2 cut(s)	22, 301
MboII	GAAGA	3 cut(s)	343, 433, 620
MfeI	CAATTG	1 cut(s)	465
MflI	RGATCY	2 cut(s)	22, 301
MluCI	AATT	5 cut(s)	40, 76, 357, 465, 482
MnlI	CCTC	4 cut(s)	64, 141, 196, 346
MseI	TTAA	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	382
MspR9I	CCNGG	1 cut(s)	593
MunI	CAATTG	1 cut(s)	465
MvaI	CCWGG	1 cut(s)	593
MwoI	GCNNNNNNNGC	4 cut(s)	434, 443, 566, 587
NdeII	GATC	2 cut(s)	22, 301
NlaIII	CATG	1 cut(s)	320
NmeAIII	GCCGAG	1 cut(s)	505
NmuCI	GTSAC	1 cut(s)	183
PceI	AGGCCT	1 cut(s)	151
PfeI	GAWTC	4 cut(s)	59, 413, 431, 470
PkrI	GCNGC	1 cut(s)	637
Psp6I	CCWGG	1 cut(s)	591
PspGI	CCWGG	1 cut(s)	591
PspPI	GGNCC	1 cut(s)	612
PstNI	CAGNNNCTG	2 cut(s)	262, 434
PsuI	RGATCY	2 cut(s)	22, 301
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	269
SatI	GCNGC	1 cut(s)	636
Sau3AI	GATC	2 cut(s)	22, 301
Sau96I	GGNCC	1 cut(s)	612
ScrFI	CCNGG	1 cut(s)	593
SfaNI	GCATC	5 cut(s)	39, 218, 254, 568, 658
Sse9I	AATT	5 cut(s)	40, 76, 357, 465, 482
SseBI	AGGCCT	1 cut(s)	151
SspMI	CTAG	1 cut(s)	20
StuI	AGGCCT	1 cut(s)	151
StyD4I	CCNGG	1 cut(s)	591
StyI	CCWWGG	2 cut(s)	408, 571
TaaI	ACNGT	2 cut(s)	264, 517
TasI	AATT	5 cut(s)	40, 76, 357, 465, 482
TfiI	GAWTC	4 cut(s)	59, 413, 431, 470
Tru1I	TTAA	1 cut(s)	269
Tru9I	TTAA	1 cut(s)	269
TscAI	CASTG	2 cut(s)	178, 267
TseFI	GTSAC	1 cut(s)	183
TseI	GCWGC	1 cut(s)	635
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	4 cut(s)	150, 333, 475, 563
TspRI	CASTG	2 cut(s)	178, 267
XapI	RAATTY	1 cut(s)	40
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.