Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006252

Physical Location & Seq

Genomic Coordinates Forward (+)

10871352 .. 10876171

Gene Structure 4820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10010.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGAACTTTCACCCCTGTTTTCTGATGATAGCCGTGTTGCAGAGGCTGCTAAAATTGCACAAAAATTGAGGGCCTTTGCTGAGGAAGATATTGGAAGACAGGGGATATCTGTACCATCAGGCAATGCAACAGCTAGCAGAGGGTTAGAAGTTGCAGTTGCTAATCTTCAGGACTACTGCAATGAATTGGAGAACAGATTGCTATCTCGTTTTGATACTGCATCACAGAGAAGAGAATTGTCAACCATGGCAGAATGTGCTAAAATATTATCTCAGTTTAACAGGGGCTCTAGTGCTATGCAACATTATGTGGCAACACGTCCAATGTTTATTGACGTGGAAGTCATGAATGCAGATACCAGATTGGTTCTTGGTGATGAGGGTTCACAGGCTAGTCCTAGCAATGTTGCTCGTGGACTTTCTTCCTTGTATAAAGAAATCACAGACACTGTACGTAAGGAGGCTGCAACAATTATGGCTGTCTTCCCTTCTCCAAATGAAGTTATGTCAATCTTAGTTCAGCGAGTTTTGGAGCAGAGAGTTACTGCTTTACTGGACAAATTATTAGTGAAGCCATCTTTGGTGAATCTACCTCCCATGGAAGAAGGCGGACTTCTATTGTATCTTAGAATGCTAGCAGTGGCATATGAGAAGACACAAGAACTTGCTAGGGATCTACGAGCTGTGGGATGTGGTGACTTGGATATTGAAGGCCTCACGGAGTCTCTGTTTTCTTCTCACAAGGATGGATATCCTGAACATGAGCAGGCCTCTCTTAAACAACTATATCAAGCTAAGATGGCAGAACTACGTGCTGAAAACCAACAGATACCTGAATCAGGTGGAACAATCGGGCGCTCAAAAAGCACTGCAGTAGCATCTTCTCACCAGCAAATATCCGTCACTGTTGTGACAGAGTTTGTTCGTTGGAATGAAGAAGCCATTGCCAGATGCACTTTGTTTTCATCTCAACCTGCAACAATTGCAGCAAATGTAAAAGCAGTGTTCACTTCCCTGCTAGACCAAGTCAGTCAATATATAACGGAAGGTCTTGAGCGAGCAAGAGATGGCCTGACTGAAGCTGCAGCTTTGAGAGAAAGATTTGTACTGGGCACTAGCGCAGAAGCTGCTGCTGCGGCTGGTGAAAGCAGTTTCAGATCTTTCATGGTTGCTGTACAACGCTGCGGTAGTAGTGTGGCTATAGTTCAGCAATATTTTTCAAATTCTATATCTCGGCTCCTACTCCCTGTCGATGGTGCACATGCTGCTTCTTGTGAAGAAATGGCAACAGCTATGTCCAGTGCAGAGGGTGCCGCATATAAAGGGCTTCAACAGTGCATTGAAACTGTGATGGCAGAGGTCAGTGGAGCGGTTACTTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005938 GO:0006810 GO:0006887 GO:0006892 GO:0006893 GO:0008150 GO:0009987 GO:0016192 GO:0031982 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0046903 GO:0048193 GO:0051179 GO:0051234 GO:0070062 GO:0071944 GO:0098876 GO:0099023 GO:0099568 GO:1903561

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec10

Protein Analysis

462

Amino Acids

49.86

Weight (kDa)

5.05

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12370 AT5G12370 AT5G12370
fragaria_vesca	FvH4_7g15330 FvH4_7g15330 FvH4_7g15330 FvH4_7g15330
malus_domestica	MD01G1071200.v1.1 MD07G1131500.v1.1
prunus_persica	Prupe.2G177200_v2.0.a1
pyrus_communis	pycom01g10010 pycom07g12840
rosa_chinensis	RchiOBHm_Chr1g0357661 RchiOBHm_Chr1g0375651 RchiOBHm_Chr1g0375661
rosa_laevigata	RLG00000028010
rosa_multiflora	Rmu_sc0001644.1_g000021 Rmu_sc0004683.1_g000003
rosa_roxburghii	Rroxscaffold_4G00282690 Rroxscaffold_4G00298660
rosa_rugosa	Rorug01G0257500
rosa_samantha	Rh1AG271500 Rh1AG402900 Rh1BG238400 Rh1CG255300 Rh1DG266700
rosa_wichuraiana	Rw1G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
Acc36I	ACCTGC	1 cut(s)	982
AccB1I	GGYRCC	1 cut(s)	1310
AccBSI	CCGCTC	1 cut(s)	1370
AciI	CCGC	5 cut(s)	609, 1136, 1185, 1314, 1370
AclWI	GGATC	1 cut(s)	681
AcsI	RAATTY	1 cut(s)	1222
AcuI	CTGAAG	2 cut(s)	152, 1098
AfaI	GTAC	4 cut(s)	114, 453, 1107, 1176
AfiI	CCNNNNNNNGG	2 cut(s)	839, 1253
AflIII	ACRYGT	1 cut(s)	317
AgsI	TTSAA	4 cut(s)	710, 1221, 1331, 1343
AjiI	CACGTC	2 cut(s)	320, 337
AjuI	GAANNNNNNNTTGG	2 cut(s)	563, 595
AleI	CACNNNNGTG	1 cut(s)	908
AluBI	AGCT	7 cut(s)	134, 683, 794, 1082, 1088, 1127, 1292
AluI	AGCT	7 cut(s)	134, 683, 794, 1082, 1088, 1127, 1292
Alw21I	GWGCWC	1 cut(s)	1261
Alw26I	GTCTC	1 cut(s)	729
Alw44I	GTGCAC	1 cut(s)	1257
AlwI	GGATC	1 cut(s)	681
AlwNI	CAGNNNCTG	3 cut(s)	47, 449, 1127
AoxI	GGCC	4 cut(s)	72, 712, 768, 1069
ApaLI	GTGCAC	1 cut(s)	1257
ApoI	RAATTY	1 cut(s)	1222
AspLEI	GCGC	2 cut(s)	858, 1121
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	6 cut(s)	3, 386, 595, 707, 878, 1154
AsuNHI	GCTAGC	2 cut(s)	134, 634
BaeGI	GKGCMC	2 cut(s)	1115, 1261
BanI	GGYRCC	1 cut(s)	1310
BanII	GRGCYC	1 cut(s)	290
BauI	CACGAG	1 cut(s)	411
BbsI	GAAGAC	3 cut(s)	103, 475, 659
Bbv12I	GWGCWC	1 cut(s)	1261
BbvCI	CCTCAGC	1 cut(s)	81
BccI	CCATC	7 cut(s)	124, 583, 740, 793, 1061, 1247, 1345
BceAI	ACGGC	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	729
BfaI	CTAG	8 cut(s)	135, 291, 393, 399, 635, 669, 1019, 1116
BfmI	CTRYAG	3 cut(s)	870, 1083, 1200
BfoI	RGCGCY	1 cut(s)	859
BfuAI	ACCTGC	1 cut(s)	982
BglII	AGATCT	1 cut(s)	1157
BmgBI	CACGTC	2 cut(s)	320, 337
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	2 cut(s)	1238, 1312
BmrI	ACTGGG	1 cut(s)	1118
BmsI	GCATC	3 cut(s)	230, 887, 941
BmtI	GCTAGC	2 cut(s)	138, 638
BmuI	ACTGGG	1 cut(s)	1118
BpiI	GAAGAC	3 cut(s)	103, 475, 659
BplI	GAGNNNNNCTC	2 cut(s)	755, 787
Bpu10I	CCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	1073
BsaAI	YACGTR	2 cut(s)	455, 812
BsaBI	GATNNNNATC	2 cut(s)	202, 750
BsaJI	CCNNGG	2 cut(s)	246, 597
BsaXI	ACNNNNNCTCC	2 cut(s)	713, 743
Bsc4I	CCNNNNNNNGG	2 cut(s)	839, 1253
Bse1I	ACTGG	3 cut(s)	558, 1113, 1299
Bse3DI	GCAATG	4 cut(s)	130, 187, 409, 942
Bse8I	GATNNNNATC	2 cut(s)	202, 750
BseDI	CCNNGG	2 cut(s)	246, 597
BseGI	GGATG	2 cut(s)	695, 751
BseJI	GATNNNNATC	2 cut(s)	202, 750
BseLI	CCNNNNNNNGG	2 cut(s)	839, 1253
BseMI	GCAATG	4 cut(s)	130, 187, 409, 942
BseMII	CTCAG	2 cut(s)	72, 287
BseNI	ACTGG	3 cut(s)	558, 1113, 1299
BseSI	GKGCMC	2 cut(s)	1115, 1261
BsgI	GTGCAG	1 cut(s)	1323
BshFI	GGCC	4 cut(s)	74, 714, 770, 1071
BshNI	GGYRCC	1 cut(s)	1310
BsiHKAI	GWGCWC	1 cut(s)	1261
BslI	CCNNNNNNNGG	2 cut(s)	839, 1253
BsmAI	GTCTC	1 cut(s)	729
BsmI	GAATGC	2 cut(s)	355, 636
BsnI	GGCC	4 cut(s)	74, 714, 770, 1071
Bsp1286I	GDGCHC	3 cut(s)	290, 1115, 1261
Bsp1407I	TGTACA	1 cut(s)	1174
Bsp143I	GATC	2 cut(s)	673, 1157
Bsp19I	CCATGG	2 cut(s)	246, 597
BspACI	CCGC	5 cut(s)	609, 1136, 1185, 1314, 1370
BspANI	GGCC	4 cut(s)	74, 714, 770, 1071
BspCNI	CTCAG	2 cut(s)	73, 286
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	2 cut(s)	1238, 1312
BspMAI	CTGCAG	2 cut(s)	874, 1087
BspMI	ACCTGC	1 cut(s)	982
BspOI	GCTAGC	2 cut(s)	138, 638
BspPI	GGATC	1 cut(s)	681
BspT107I	GGYRCC	1 cut(s)	1310
BsrBI	CCGCTC	1 cut(s)	1370
BsrDI	GCAATG	4 cut(s)	130, 187, 409, 942
BsrGI	TGTACA	1 cut(s)	1174
BsrI	ACTGG	3 cut(s)	558, 1113, 1299
BssECI	CCNNGG	2 cut(s)	246, 597
BssMI	GATC	2 cut(s)	673, 1157
BssSI	CACGAG	1 cut(s)	411
BssT1I	CCWWGG	2 cut(s)	246, 597
Bst2BI	CACGAG	1 cut(s)	411
Bst4CI	ACNGT	4 cut(s)	451, 907, 1335, 1348
Bst6I	CTCTTC	1 cut(s)	226
BstAPI	GCANNNNNTGC	6 cut(s)	47, 257, 983, 1127, 1265, 1310
BstAUI	TGTACA	1 cut(s)	1174
BstBAI	YACGTR	2 cut(s)	455, 812
BstC8I	GCNNGC	4 cut(s)	136, 636, 768, 1059
BstDEI	CTNAG	5 cut(s)	81, 273, 514, 626, 795
BstDSI	CCRYGG	2 cut(s)	246, 597
BstENI	CCTNNNNNAGG	1 cut(s)	837
BstF5I	GGATG	2 cut(s)	695, 751
BstH2I	RGCGCY	1 cut(s)	859
BstHHI	GCGC	2 cut(s)	858, 1121
BstKTI	GATC	2 cut(s)	676, 1160
BstMAI	GTCTC	1 cut(s)	729
BstMBI	GATC	2 cut(s)	673, 1157
BstNSI	RCATGY	1 cut(s)	1265
BstSFI	CTRYAG	3 cut(s)	870, 1083, 1200
BstSLI	GKGCMC	2 cut(s)	1115, 1261
BstSNI	TACGTA	1 cut(s)	455
BstV2I	GAAGAC	3 cut(s)	103, 475, 659
BstX2I	RGATCY	2 cut(s)	673, 1157
BstYI	RGATCY	2 cut(s)	673, 1157
BsuRI	GGCC	4 cut(s)	74, 714, 770, 1071
BtgI	CCRYGG	2 cut(s)	246, 597
BtrI	CACGTC	2 cut(s)	320, 337
BtsCI	GGATG	2 cut(s)	695, 751
BtsI	GCAGTG	3 cut(s)	645, 867, 1008
BtsIMutI	CAGTG	8 cut(s)	447, 645, 867, 903, 1008, 1306, 1340, 1369
BveI	ACCTGC	1 cut(s)	982
Cac8I	GCNNGC	4 cut(s)	136, 636, 768, 1059
CaiI	CAGNNNCTG	3 cut(s)	47, 449, 1127
CciI	TCATGA	1 cut(s)	345
CfoI	GCGC	2 cut(s)	858, 1121
Cfr13I	GGNCC	1 cut(s)	72
Csp6I	GTAC	4 cut(s)	113, 452, 1106, 1175
CviAII	CATG	6 cut(s)	247, 346, 598, 761, 1165, 1262
CviQI	GTAC	4 cut(s)	113, 452, 1106, 1175
DdeI	CTNAG	5 cut(s)	81, 273, 514, 626, 795
DpnI	GATC	2 cut(s)	675, 1159
DpnII	GATC	2 cut(s)	673, 1157
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
EciI	GGCGGA	1 cut(s)	624
Eco105I	TACGTA	1 cut(s)	455
Eco130I	CCWWGG	2 cut(s)	246, 597
Eco147I	AGGCCT	2 cut(s)	714, 770
Eco24I	GRGCYC	1 cut(s)	290
Eco32I	GATATC	2 cut(s)	108, 752
Eco57I	CTGAAG	2 cut(s)	152, 1098
EcoNI	CCTNNNNNAGG	1 cut(s)	837
EcoO109I	RGGNCCY	1 cut(s)	72
EcoRV	GATATC	2 cut(s)	108, 752
EcoT14I	CCWWGG	2 cut(s)	246, 597
EcoT38I	GRGCYC	1 cut(s)	290
ErhI	CCWWGG	2 cut(s)	246, 597
FaeI	CATG	6 cut(s)	250, 349, 601, 764, 1168, 1265
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FatI	CATG	6 cut(s)	246, 345, 597, 760, 1164, 1261
FauNDI	CATATG	1 cut(s)	646
FokI	GGATG	2 cut(s)	702, 758
FriOI	GRGCYC	1 cut(s)	290
FspBI	CTAG	8 cut(s)	135, 291, 393, 399, 635, 669, 1019, 1116
GlaI	GCGC	2 cut(s)	857, 1120
HaeII	RGCGCY	1 cut(s)	859
HaeIII	GGCC	4 cut(s)	74, 714, 770, 1071
HhaI	GCGC	2 cut(s)	858, 1121
Hin1II	CATG	6 cut(s)	250, 349, 601, 764, 1168, 1265
Hin6I	GCGC	2 cut(s)	856, 1119
HinP1I	GCGC	2 cut(s)	856, 1119
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HinfI	GANTC	3 cut(s)	586, 722, 836
HphI	GGTGA	6 cut(s)	3, 386, 595, 707, 878, 1154
Hpy166II	GTNNAC	5 cut(s)	243, 386, 416, 1008, 1259
Hpy188I	TCNGA	2 cut(s)	25, 1157
Hpy188III	TCNNGA	4 cut(s)	170, 346, 755, 1052
Hpy8I	GTNNAC	5 cut(s)	243, 386, 416, 1008, 1259
HpyAV	CCTTC	4 cut(s)	498, 599, 704, 1040
HpyCH4III	ACNGT	4 cut(s)	451, 907, 1335, 1348
HpyCH4IV	ACGT	4 cut(s)	319, 336, 454, 811
HpyF3I	CTNAG	5 cut(s)	81, 273, 514, 626, 795
HpySE526I	ACGT	4 cut(s)	319, 336, 454, 811
Hsp92II	CATG	6 cut(s)	250, 349, 601, 764, 1168, 1265
HspAI	GCGC	2 cut(s)	856, 1119
Kzo9I	GATC	2 cut(s)	673, 1157
LmnI	GCTCC	3 cut(s)	532, 1242, 1367
LweI	GCATC	3 cut(s)	230, 887, 941
MaeI	CTAG	8 cut(s)	135, 291, 393, 399, 635, 669, 1019, 1116
MaeII	ACGT	4 cut(s)	319, 336, 454, 811
MaeIII	GTNAC	5 cut(s)	541, 695, 901, 910, 1372
MalI	GATC	2 cut(s)	675, 1159
MbiI	CCGCTC	1 cut(s)	1370
MboI	GATC	2 cut(s)	673, 1157
MfeI	CAATTG	1 cut(s)	981
MflI	RGATCY	2 cut(s)	673, 1157
MhlI	GDGCHC	3 cut(s)	290, 1115, 1261
MluCI	AATT	8 cut(s)	54, 65, 185, 236, 471, 560, 981, 1222
MlyI	GAGTC	1 cut(s)	731
MmeI	TCCRAC	1 cut(s)	908
MseI	TTAA	2 cut(s)	279, 777
MslI	CAYNNNNRTG	2 cut(s)	744, 908
MunI	CAATTG	1 cut(s)	981
Mva1269I	GAATGC	2 cut(s)	355, 636
NcoI	CCATGG	2 cut(s)	246, 597
NdeI	CATATG	1 cut(s)	646
NdeII	GATC	2 cut(s)	673, 1157
NheI	GCTAGC	2 cut(s)	134, 634
NlaIII	CATG	6 cut(s)	250, 349, 601, 764, 1168, 1265
NlaIV	GGNNCC	2 cut(s)	1238, 1312
NmeAIII	GCCGAG	1 cut(s)	1213
NmuCI	GTSAC	3 cut(s)	695, 901, 910
NspI	RCATGY	1 cut(s)	1265
OliI	CACNNNNGTG	1 cut(s)	908
PagI	TCATGA	1 cut(s)	345
PceI	AGGCCT	2 cut(s)	714, 770
PctI	GAATGC	2 cut(s)	355, 636
PfeI	GAWTC	2 cut(s)	586, 836
PflFI	GACNNNGTC	1 cut(s)	1025
PleI	GAGTC	1 cut(s)	730
PpsI	GAGTC	1 cut(s)	730
Ppu21I	YACGTR	2 cut(s)	455, 812
PspN4I	GGNNCC	2 cut(s)	1238, 1312
PspPI	GGNCC	1 cut(s)	72
PstI	CTGCAG	2 cut(s)	874, 1087
PstNI	CAGNNNCTG	3 cut(s)	47, 449, 1127
PsuI	RGATCY	2 cut(s)	673, 1157
PsyI	GACNNNGTC	1 cut(s)	1025
RsaI	GTAC	4 cut(s)	114, 453, 1107, 1176
RsaNI	GTAC	4 cut(s)	113, 452, 1106, 1175
RseI	CAYNNNNRTG	2 cut(s)	744, 908
SaqAI	TTAA	2 cut(s)	279, 777
Sau3AI	GATC	2 cut(s)	673, 1157
Sau96I	GGNCC	1 cut(s)	72
SchI	GAGTC	1 cut(s)	731
SduI	GDGCHC	3 cut(s)	290, 1115, 1261
SfaNI	GCATC	3 cut(s)	230, 887, 941
SfcI	CTRYAG	3 cut(s)	870, 1083, 1200
SmiMI	CAYNNNNRTG	2 cut(s)	744, 908
SmlI	CTYRAG	1 cut(s)	1052
SmoI	CTYRAG	1 cut(s)	1052
SnaBI	TACGTA	1 cut(s)	455
Sse9I	AATT	8 cut(s)	54, 65, 185, 236, 471, 560, 981, 1222
SseBI	AGGCCT	2 cut(s)	714, 770
SsiI	CCGC	5 cut(s)	609, 1136, 1185, 1314, 1370
SspI	AATATT	2 cut(s)	267, 1214
SspMI	CTAG	8 cut(s)	135, 291, 393, 399, 635, 669, 1019, 1116
StuI	AGGCCT	2 cut(s)	714, 770
StyI	CCWWGG	2 cut(s)	246, 597
TaaI	ACNGT	4 cut(s)	451, 907, 1335, 1348
TaiI	ACGT	4 cut(s)	322, 339, 457, 814
TaqI	TCGA	1 cut(s)	1251
TasI	AATT	8 cut(s)	54, 65, 185, 236, 471, 560, 981, 1222
TatI	WGTACW	2 cut(s)	1105, 1174
TauI	GCSGC	2 cut(s)	1139, 1316
TfiI	GAWTC	2 cut(s)	586, 836
Tru1I	TTAA	2 cut(s)	279, 777
Tru9I	TTAA	2 cut(s)	279, 777
TscAI	CASTG	8 cut(s)	454, 645, 874, 910, 1008, 1306, 1340, 1369
TseFI	GTSAC	3 cut(s)	695, 901, 910
Tsp45I	GTSAC	3 cut(s)	695, 901, 910
TspDTI	ATGAA	6 cut(s)	198, 362, 513, 948, 954, 1153
TspGWI	ACGGA	3 cut(s)	734, 889, 1058
TspRI	CASTG	8 cut(s)	454, 645, 874, 910, 1008, 1306, 1340, 1369
Tth111I	GACNNNGTC	1 cut(s)	1025
VneI	GTGCAC	1 cut(s)	1257
XagI	CCTNNNNNAGG	1 cut(s)	837
XapI	RAATTY	1 cut(s)	1222
XceI	RCATGY	1 cut(s)	1265
XspI	CTAG	8 cut(s)	135, 291, 393, 399, 635, 669, 1019, 1116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.