pycom07g12840

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0006252
Physical Location & Seq
Reverse (-)
14207897 .. 14213335
5439 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g12840.1

Sequence Viewer

Length: 1500 bp
ATGGAACTTTCACCCTTATTTTCTGATGATAGCCGTGTTGCAGAGGCTGCTAAAATTGCACAAAAATTGCGGGCATTTGCTGAGGAAGATATTGGAAGACAAGGGATATCTGTACCATCAGTTATGGGCAATGCAACAGCTAGCAGAGGGTTAGAAGTTGCAGTTCCTAATCTTCAGGACTACTGCAATGAATTGGAGAACAGATTGTTATCTCGTTTTGATGCTGCATCACAGAGAAGAGAACTGTCAACCATGGCAGAATGTGCTAAAATATTATCTCAGTTTAACAGGGGCACTAGTGCTATGCAACATTATGTGGCAACACGTCCAATGTTTATTGACGTGGAAGTCATGAATGCAGATACCAGGTTGGTTCTTAGTGATGAGGGTTCACAGGCTAGTCCTAGCAATGTTGCTCGTGGACTTTCGTCCTTGTATAAAGAAATCACAGATAATGTACGTAAGGAAGCTGCAACAGTTATGGCTGTCTTCCCTTCTCCAAATGAAGTTATGTCAATCTTAGTTCAGCGAGTTTTGGAGCAGAGAGTTACTGCTCTACTGGACAAATTACTAGTGAAGCCATCTTTGGTGAATCTACCTCCTATGGAAGAAGGCGGACTTCTATTATATCTTAGAATGCTAGCAGTGGCATATGAGAAGACACAAGAACTTGCTAGGGACCTACGAGCTGTGGGATGTGGTGACTTGGATATTGAGGGCCTCACAGAATCTCTGTTTTCTTCTCACAAGGATGGATATCCTGAACATGAGCAGGCCTCTCTTAAACAACTATATCTAGCTAAGGTGGCAGAACTACGTGCTGAAAGCCAACAGATATCTGAATCAAGTGGAACAATTGGGCGCTCAAAAGGTGCTGCAGTTGCATCTTCCCTCCAGCAAATATCCGTCACTGTTGTGACAGAGTTTGTCCGCTGGAATGAAGAAGCAATTGCCAGATGCACTTTGTTTTCATCTCAACCTGCAACACTTGCAGCAAATGTAAAGGTGGTGTTCACTTCCCTGCTAGACCAAGTCAGTCAATATATAACGGAAGGTCTTGAGCGAGCAAGAGATGGCCTGACTGAAGCTGCAGCTTTGAGGGAAAGATTTGTACTTGGGACTAGCGTTAGAAGGGTGGCTGCTGCTGCTGCTTCTGCTGCAGAAGCTGCTGCCGCTGCTGGTGAAAGCAGTATCGGATCTTTCATGGTTGCTGTACAACGTTGTGGTAGTAGTGTGGCTATAGTTCAGCAGTATTTCGCAAATTCTATATCTCGGCTTCTACTCCCTGTCGATGGTGCACATGCTGCTTCTTGTGAAGAAATGGCAACAGCTATGTCCAGTGCAGAGGGTGCTGCATATAAAGGGCTTCAACAGTGCATTGAAACTGTGATGGCAGAGGTGGAGCGGTTACTTTCTGCTGAACAGAAGGCAACAGATTATAGATCGAAGATGGATTTGCTCCTGATCATCGGCCAACAAATGCCTGTACAAGAGTTGTAG

Protein Analysis

500

Amino Acids

53.93

Weight (kDa)

5.05

Isoelectric Point (pI)

50.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec10_HB PF07393 15 - 487 8.5e-97 Exocyst complex component Sec10-like, alpha-helical bundle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 347
Acc36I ACCTGC 1 cut(s) 988
AccBSI CCGCTC 1 cut(s) 1405
AciI CCGC 5 cut(s) 70, 615, 931, 1173, 1405
AclI AACGTT 1 cut(s) 1219
AclWI GGATC 1 cut(s) 1204
AcoI YGGCCR 1 cut(s) 1471
AcsI RAATTY 1 cut(s) 1261
AcuI CTGAAG 2 cut(s) 158, 1104
AfaI GTAC 5 cut(s) 114, 459, 1113, 1215, 1488
AfiI CCNNNNNNNGG 1 cut(s) 1292
AflIII ACRYGT 1 cut(s) 323
AgsI TTSAA 2 cut(s) 1370, 1382
AhlI ACTAGT 2 cut(s) 296, 571
AjiI CACGTC 2 cut(s) 326, 343
AjnI CCWGG 1 cut(s) 365
AjuI GAANNNNNNNTTGG 2 cut(s) 569, 601
AleI CACNNNNGTG 1 cut(s) 914
AluBI AGCT 8 cut(s) 140, 470, 689, 800, 1088, 1094, 1166, 1331
AluI AGCT 8 cut(s) 140, 470, 689, 800, 1088, 1094, 1166, 1331
Alw21I GWGCWC 1 cut(s) 1300
Alw44I GTGCAC 1 cut(s) 1296
AlwI GGATC 1 cut(s) 1204
AlwNI CAGNNNCTG 2 cut(s) 47, 1166
AoxI GGCC 4 cut(s) 718, 774, 1075, 1471
ApaLI GTGCAC 1 cut(s) 1296
ApoI RAATTY 1 cut(s) 1261
AspLEI GCGC 1 cut(s) 864
AspS9I GGNCC 2 cut(s) 679, 718
AsuHPI GGTGA 4 cut(s) 3, 601, 713, 1193
AsuNHI GCTAGC 2 cut(s) 140, 640
AvaII GGWCC 1 cut(s) 679
BaeGI GKGCMC 2 cut(s) 296, 1300
BauI CACGAG 1 cut(s) 417
BbsI GAAGAC 3 cut(s) 103, 481, 665
Bbv12I GWGCWC 1 cut(s) 1300
BbvCI CCTCAGC 1 cut(s) 81
BccI CCATC 7 cut(s) 124, 589, 746, 1067, 1286, 1384, 1444
BceAI ACGGC 1 cut(s) 18
BciT130I CCWGG 1 cut(s) 367
BclI TGATCA 1 cut(s) 1464
BcuI ACTAGT 2 cut(s) 296, 571
BfmI CTRYAG 4 cut(s) 876, 1089, 1158, 1239
BfoI RGCGCY 1 cut(s) 865
BfuAI ACCTGC 1 cut(s) 988
Bme1390I CCNGG 1 cut(s) 367
Bme18I GGWCC 1 cut(s) 679
BmgBI CACGTC 2 cut(s) 326, 343
BmgT120I GGNCC 2 cut(s) 679, 718
BmiI GGNNCC 1 cut(s) 680
BmrFI CCNGG 1 cut(s) 367
BmsI GCATC 4 cut(s) 211, 236, 893, 947
BmtI GCTAGC 2 cut(s) 144, 644
BoxI GACNNNNGTC 1 cut(s) 427
BpiI GAAGAC 3 cut(s) 103, 481, 665
BplI GAGNNNNNCTC 2 cut(s) 761, 793
BpmI CTGGAG 1 cut(s) 878
Bpu10I CCTNAGC 2 cut(s) 81, 801
BpuEI CTTGAG 1 cut(s) 1079
BsaAI YACGTR 2 cut(s) 461, 818
BsaBI GATNNNNATC 2 cut(s) 208, 756
BsaJI CCNNGG 1 cut(s) 252
Bsc4I CCNNNNNNNGG 1 cut(s) 1292
Bse1I ACTGG 2 cut(s) 564, 1338
Bse3DI GCAATG 3 cut(s) 136, 193, 415
Bse8I GATNNNNATC 2 cut(s) 208, 756
BseBI CCWGG 1 cut(s) 367
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 2 cut(s) 701, 757
BseJI GATNNNNATC 2 cut(s) 208, 756
BseLI CCNNNNNNNGG 1 cut(s) 1292
BseMI GCAATG 3 cut(s) 136, 193, 415
BseMII CTCAG 2 cut(s) 72, 293
BseNI ACTGG 2 cut(s) 564, 1338
BseSI GKGCMC 2 cut(s) 296, 1300
BsgI GTGCAG 1 cut(s) 1362
BshFI GGCC 4 cut(s) 720, 776, 1077, 1473
BsiHKAI GWGCWC 1 cut(s) 1300
BslFI GGGAC 2 cut(s) 692, 1132
BslI CCNNNNNNNGG 1 cut(s) 1292
BsmFI GGGAC 2 cut(s) 692, 1132
BsmI GAATGC 2 cut(s) 361, 642
BsnI GGCC 4 cut(s) 720, 776, 1077, 1473
Bsp1286I GDGCHC 2 cut(s) 296, 1300
Bsp1407I TGTACA 2 cut(s) 1213, 1486
Bsp143I GATC 3 cut(s) 1196, 1442, 1464
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 5 cut(s) 70, 615, 931, 1173, 1405
BspANI GGCC 4 cut(s) 720, 776, 1077, 1473
BspCNI CTCAG 2 cut(s) 73, 292
BspHI TCATGA 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 680
BspMAI CTGCAG 3 cut(s) 880, 1093, 1162
BspMI ACCTGC 1 cut(s) 988
BspOI GCTAGC 2 cut(s) 144, 644
BspPI GGATC 1 cut(s) 1204
BsrBI CCGCTC 1 cut(s) 1405
BsrDI GCAATG 3 cut(s) 136, 193, 415
BsrGI TGTACA 2 cut(s) 1213, 1486
BsrI ACTGG 2 cut(s) 564, 1338
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 3 cut(s) 1196, 1442, 1464
BssSI CACGAG 1 cut(s) 417
BssT1I CCWWGG 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 367
Bst4CI ACNGT 5 cut(s) 246, 478, 913, 1374, 1387
Bst6I CTCTTC 1 cut(s) 232
BstAPI GCANNNNNTGC 6 cut(s) 47, 263, 989, 1166, 1304, 1349
BstAUI TGTACA 2 cut(s) 1213, 1486
BstBAI YACGTR 2 cut(s) 461, 818
BstC8I GCNNGC 5 cut(s) 72, 142, 642, 774, 1065
BstDEI CTNAG 6 cut(s) 81, 279, 377, 520, 632, 801
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 2 cut(s) 701, 757
BstH2I RGCGCY 1 cut(s) 865
BstHHI GCGC 1 cut(s) 864
BstKTI GATC 3 cut(s) 1199, 1445, 1467
BstMBI GATC 3 cut(s) 1196, 1442, 1464
BstNI CCWGG 1 cut(s) 367
BstNSI RCATGY 1 cut(s) 1304
BstPAI GACNNNNGTC 1 cut(s) 427
BstSCI CCNGG 1 cut(s) 365
BstSFI CTRYAG 4 cut(s) 876, 1089, 1158, 1239
BstSLI GKGCMC 2 cut(s) 296, 1300
BstSNI TACGTA 1 cut(s) 461
BstV2I GAAGAC 3 cut(s) 103, 481, 665
BstX2I RGATCY 1 cut(s) 1196
BstYI RGATCY 1 cut(s) 1196
BsuRI GGCC 4 cut(s) 720, 776, 1077, 1473
BtgI CCRYGG 1 cut(s) 252
BtrI CACGTC 2 cut(s) 326, 343
BtsCI GGATG 2 cut(s) 701, 757
BtsI GCAGTG 1 cut(s) 651
BtsIMutI CAGTG 4 cut(s) 651, 909, 1345, 1379
BveI ACCTGC 1 cut(s) 988
Cac8I GCNNGC 5 cut(s) 72, 142, 642, 774, 1065
CaiI CAGNNNCTG 2 cut(s) 47, 1166
CciI TCATGA 1 cut(s) 351
CfoI GCGC 1 cut(s) 864
Cfr13I GGNCC 2 cut(s) 679, 718
CsiI ACCWGGT 1 cut(s) 365
Csp6I GTAC 5 cut(s) 113, 458, 1112, 1214, 1487
CviAII CATG 5 cut(s) 253, 352, 767, 1204, 1301
CviQI GTAC 5 cut(s) 113, 458, 1112, 1214, 1487
DdeI CTNAG 6 cut(s) 81, 279, 377, 520, 632, 801
DpnI GATC 3 cut(s) 1198, 1444, 1466
DpnII GATC 3 cut(s) 1196, 1442, 1464
DrdI GACNNNNNNGTC 1 cut(s) 347
DseDI GACNNNNNNGTC 1 cut(s) 347
EaeI YGGCCR 1 cut(s) 1471
Eam1104I CTCTTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 232
EciI GGCGGA 1 cut(s) 630
Eco105I TACGTA 1 cut(s) 461
Eco130I CCWWGG 1 cut(s) 252
Eco147I AGGCCT 1 cut(s) 776
Eco32I GATATC 3 cut(s) 108, 758, 837
Eco47I GGWCC 1 cut(s) 679
Eco57I CTGAAG 2 cut(s) 158, 1104
EcoO109I RGGNCCY 2 cut(s) 679, 718
EcoRII CCWGG 1 cut(s) 365
EcoRV GATATC 3 cut(s) 108, 758, 837
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 5 cut(s) 256, 355, 770, 1207, 1304
FalI AAGNNNNNCTT 2 cut(s) 603, 635
FaqI GGGAC 2 cut(s) 692, 1132
FatI CATG 5 cut(s) 252, 351, 766, 1203, 1300
FauI CCCGC 1 cut(s) 63
FauNDI CATATG 1 cut(s) 652
FbaI TGATCA 1 cut(s) 1464
FokI GGATG 2 cut(s) 708, 764
GlaI GCGC 1 cut(s) 863
GsuI CTGGAG 1 cut(s) 878
HaeII RGCGCY 1 cut(s) 865
HaeIII GGCC 4 cut(s) 720, 776, 1077, 1473
HhaI GCGC 1 cut(s) 864
Hin1II CATG 5 cut(s) 256, 355, 770, 1207, 1304
Hin6I GCGC 1 cut(s) 862
HinP1I GCGC 1 cut(s) 862
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HinfI GANTC 3 cut(s) 592, 728, 842
HphI GGTGA 4 cut(s) 3, 601, 713, 1193
Hpy166II GTNNAC 5 cut(s) 249, 392, 422, 1014, 1298
Hpy188I TCNGA 3 cut(s) 25, 841, 1196
Hpy188III TCNNGA 5 cut(s) 176, 352, 761, 1058, 1462
Hpy8I GTNNAC 5 cut(s) 249, 392, 422, 1014, 1298
HpyAV CCTTC 5 cut(s) 504, 605, 1046, 1125, 1420
HpyCH4III ACNGT 5 cut(s) 246, 478, 913, 1374, 1387
HpyCH4IV ACGT 5 cut(s) 325, 342, 460, 817, 1219
HpyF3I CTNAG 6 cut(s) 81, 279, 377, 520, 632, 801
HpySE526I ACGT 5 cut(s) 325, 342, 460, 817, 1219
Hsp92II CATG 5 cut(s) 256, 355, 770, 1207, 1304
HspAI GCGC 1 cut(s) 862
Ksp22I TGATCA 1 cut(s) 1464
Kzo9I GATC 3 cut(s) 1196, 1442, 1464
LmnI GCTCC 3 cut(s) 538, 1402, 1464
LweI GCATC 4 cut(s) 211, 236, 893, 947
MabI ACCWGGT 1 cut(s) 365
MaeII ACGT 5 cut(s) 325, 342, 460, 817, 1219
MaeIII GTNAC 5 cut(s) 547, 701, 907, 916, 1407
MalI GATC 3 cut(s) 1198, 1444, 1466
MbiI CCGCTC 1 cut(s) 1405
MboI GATC 3 cut(s) 1196, 1442, 1464
MfeI CAATTG 2 cut(s) 855, 948
MflI RGATCY 1 cut(s) 1196
MhlI GDGCHC 2 cut(s) 296, 1300
MluCI AATT 7 cut(s) 54, 65, 191, 566, 855, 948, 1261
MseI TTAA 2 cut(s) 285, 783
MslI CAYNNNNRTG 2 cut(s) 750, 914
MspA1I CMGCKG 2 cut(s) 933, 1175
MspR9I CCNGG 1 cut(s) 367
MunI CAATTG 2 cut(s) 855, 948
Mva1269I GAATGC 2 cut(s) 361, 642
MvaI CCWGG 1 cut(s) 367
NcoI CCATGG 1 cut(s) 252
NdeI CATATG 1 cut(s) 652
NdeII GATC 3 cut(s) 1196, 1442, 1464
NheI GCTAGC 2 cut(s) 140, 640
NlaIII CATG 5 cut(s) 256, 355, 770, 1207, 1304
NlaIV GGNNCC 1 cut(s) 680
NmeAIII GCCGAG 1 cut(s) 1252
NmuCI GTSAC 3 cut(s) 701, 907, 916
NspI RCATGY 1 cut(s) 1304
OliI CACNNNNGTG 1 cut(s) 914
PagI TCATGA 1 cut(s) 351
PceI AGGCCT 1 cut(s) 776
PctI GAATGC 2 cut(s) 361, 642
PfeI GAWTC 3 cut(s) 592, 728, 842
PflFI GACNNNGTC 1 cut(s) 1031
Ppu21I YACGTR 2 cut(s) 461, 818
PpuMI RGGWCCY 1 cut(s) 679
PshAI GACNNNNGTC 1 cut(s) 427
Psp1406I AACGTT 1 cut(s) 1219
Psp5II RGGWCCY 1 cut(s) 679
Psp6I CCWGG 1 cut(s) 365
PspGI CCWGG 1 cut(s) 365
PspN4I GGNNCC 1 cut(s) 680
PspPI GGNCC 2 cut(s) 679, 718
PspPPI RGGWCCY 1 cut(s) 679
PstI CTGCAG 3 cut(s) 880, 1093, 1162
PstNI CAGNNNCTG 2 cut(s) 47, 1166
PsuI RGATCY 1 cut(s) 1196
PsyI GACNNNGTC 1 cut(s) 1031
RsaI GTAC 5 cut(s) 114, 459, 1113, 1215, 1488
RsaNI GTAC 5 cut(s) 113, 458, 1112, 1214, 1487
RseI CAYNNNNRTG 2 cut(s) 750, 914
SaqAI TTAA 2 cut(s) 285, 783
Sau3AI GATC 3 cut(s) 1196, 1442, 1464
Sau96I GGNCC 2 cut(s) 679, 718
ScrFI CCNGG 1 cut(s) 367
SduI GDGCHC 2 cut(s) 296, 1300
SexAI ACCWGGT 1 cut(s) 365
SfaNI GCATC 4 cut(s) 211, 236, 893, 947
SfcI CTRYAG 4 cut(s) 876, 1089, 1158, 1239
SinI GGWCC 1 cut(s) 679
SmiMI CAYNNNNRTG 2 cut(s) 750, 914
SmlI CTYRAG 1 cut(s) 1058
SmoI CTYRAG 1 cut(s) 1058
SnaBI TACGTA 1 cut(s) 461
SpeI ACTAGT 2 cut(s) 296, 571
Sse9I AATT 7 cut(s) 54, 65, 191, 566, 855, 948, 1261
SseBI AGGCCT 1 cut(s) 776
SsiI CCGC 5 cut(s) 70, 615, 931, 1173, 1405
SspI AATATT 1 cut(s) 273
StuI AGGCCT 1 cut(s) 776
StyD4I CCNGG 1 cut(s) 365
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 5 cut(s) 246, 478, 913, 1374, 1387
TaiI ACGT 5 cut(s) 328, 345, 463, 820, 1222
TaqI TCGA 2 cut(s) 1290, 1445
TasI AATT 7 cut(s) 54, 65, 191, 566, 855, 948, 1261
TatI WGTACW 3 cut(s) 1111, 1213, 1486
TauI GCSGC 1 cut(s) 1175
TfiI GAWTC 3 cut(s) 592, 728, 842
Tru1I TTAA 2 cut(s) 285, 783
Tru9I TTAA 2 cut(s) 285, 783
TscAI CASTG 4 cut(s) 651, 916, 1345, 1379
TseFI GTSAC 3 cut(s) 701, 907, 916
Tsp45I GTSAC 3 cut(s) 701, 907, 916
TspDTI ATGAA 6 cut(s) 204, 368, 519, 954, 960, 1192
TspGWI ACGGA 2 cut(s) 895, 1064
TspRI CASTG 4 cut(s) 651, 916, 1345, 1379
Tth111I GACNNNGTC 1 cut(s) 1031
VneI GTGCAC 1 cut(s) 1296
VpaK11BI GGWCC 1 cut(s) 679
XapI RAATTY 1 cut(s) 1261
XceI RCATGY 1 cut(s) 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.