Rroxscaffold_4G00282690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0006252
Physical Location & Seq
Forward (+)
4800256 .. 4809037
8782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00282690.1

Sequence Viewer

Length: 789 bp
ATGTTGGAGAGGACACTAAGAGCTGCATTTTCAAAGCTTGAGAAAAATGTATGCGGCTTGTTGAGTCATGTCGAAGAGGCAGTTGAAACTTCAAACAAGTTGCTGGCATTAACATTTGCCGAGGAAGATGCATTGGTAGCTAGTAGGGGATTAGAAGTTGTAGCCGCTAATCCGAAGGACGGATGCTCAAATCTTCTACCCCATCGGGTATCAAAGCCAAGCTCCCTCCACCCCATTGGGTACCGGAGGCTCACATCTTCTACCCCATCGGTATCGGAGCCAAGCTCGCTCCACCCCATTGGGTACCGGAGGCTCACATCTTCTACCCCATCGGGTATCGGAGCCAAGCTCCCTCCACCCCATTGGGTACCGGAGGCTCACATCTTCTACCCCATCGGGTATCGGAGCAAGCCCTCTCCACCCCATTGGGTACCGGAGGCTCACATCTTCTACCCCATCGGTATCGGAGCCAAGCTCTCTCCACCCCATTGGGTACCGAGCCTCATATCTTCTACCCCATCGCATCGGAGCCAAGCTCTCTGTACCTCATTGGGTACCGGAGGTTCAAAATTCTCCATCCCATCAATCCTAGGGGCAACCTCATTGTACCACGAAAGTGGCTTACCTACGAGCGTAGCCCGCTCAAGATTTCTCTTTCCGAGGGCACTTGGGGGACTACCTATAGGCACACTAGTGCCAAACCTTGAGACCAAAATAATAAGTCCCCACCCAAGAAACATCTTGAATGGGAACTTGGGGGACTTGTACATACTAGGGAGTCTCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

28.11

Weight (kDa)

9.57

Isoelectric Point (pI)

56.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 6 cut(s) 240, 303, 367, 430, 493, 554
AccB1I GGYRCC 6 cut(s) 240, 303, 367, 430, 493, 554
AccBSI CCGCTC 1 cut(s) 642
AciI CCGC 3 cut(s) 54, 165, 640
AcsI RAATTY 1 cut(s) 569
AfaI GTAC 9 cut(s) 242, 305, 369, 432, 495, 544, 556, 608, 767
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 5 cut(s) 33, 86, 93, 567, 745
AhlI ACTAGT 1 cut(s) 691
AjuI GAANNNNNNNTTGG 2 cut(s) 737, 769
AleI CACNNNNGTG 2 cut(s) 615, 692
AluBI AGCT 8 cut(s) 23, 37, 140, 222, 285, 349, 475, 536
AluI AGCT 8 cut(s) 23, 37, 140, 222, 285, 349, 475, 536
Alw26I GTCTC 2 cut(s) 701, 785
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 569
Asp718I GGTACC 6 cut(s) 240, 303, 367, 430, 493, 554
AspA2I CCTAGG 1 cut(s) 589
AvrII CCTAGG 1 cut(s) 589
BaeGI GKGCMC 1 cut(s) 667
BanI GGYRCC 6 cut(s) 240, 303, 367, 430, 493, 554
BbvI GCAGC 1 cut(s) 10
BccI CCATC 8 cut(s) 210, 274, 337, 401, 464, 526, 584, 589
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BcoDI GTCTC 2 cut(s) 701, 785
BcuI ACTAGT 1 cut(s) 691
BfaI CTAG 5 cut(s) 141, 590, 692, 773, 787
BfmI CTRYAG 1 cut(s) 681
BisI GCNGC 3 cut(s) 24, 55, 165
BlnI CCTAGG 1 cut(s) 589
BlsI GCNGC 3 cut(s) 25, 56, 166
BmsI GCATC 3 cut(s) 118, 173, 532
BplI GAGNNNNNCTC 8 cut(s) 269, 301, 333, 365, 459, 491, 520, 552
BpuEI CTTGAG 3 cut(s) 59, 628, 725
BsaI GGTCTC 1 cut(s) 701
BsaJI CCNNGG 3 cut(s) 120, 589, 659
BsaWI WCCGGW 5 cut(s) 243, 306, 370, 433, 557
Bsc4I CCNNNNNNNGG 1 cut(s) 179
BseDI CCNNGG 3 cut(s) 120, 589, 659
BseGI GGATG 2 cut(s) 188, 576
BseLI CCNNNNNNNGG 1 cut(s) 179
BseSI GKGCMC 1 cut(s) 667
BseXI GCAGC 1 cut(s) 10
BshNI GGYRCC 6 cut(s) 240, 303, 367, 430, 493, 554
BsiSI CCGG 5 cut(s) 244, 307, 371, 434, 558
BslFI GGGAC 3 cut(s) 687, 708, 773
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 2 cut(s) 701, 785
BsmFI GGGAC 3 cut(s) 687, 708, 773
Bso31I GGTCTC 1 cut(s) 701
Bsp1286I GDGCHC 1 cut(s) 667
Bsp1407I TGTACA 1 cut(s) 765
BspACI CCGC 3 cut(s) 54, 165, 640
BspT107I GGYRCC 6 cut(s) 240, 303, 367, 430, 493, 554
BspTNI GGTCTC 1 cut(s) 701
BsrBI CCGCTC 1 cut(s) 642
BsrGI TGTACA 1 cut(s) 765
BssECI CCNNGG 3 cut(s) 120, 589, 659
BssT1I CCWWGG 1 cut(s) 589
Bst6I CTCTTC 1 cut(s) 69
BstAUI TGTACA 1 cut(s) 765
BstC8I GCNNGC 4 cut(s) 105, 287, 410, 640
BstDEI CTNAG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 188, 576
BstMAI GTCTC 2 cut(s) 701, 785
BstMWI GCNNNNNNNGC 3 cut(s) 137, 286, 639
BstSFI CTRYAG 1 cut(s) 681
BstSLI GKGCMC 1 cut(s) 667
BstV1I GCAGC 1 cut(s) 10
BstXI CCANNNNNNTGG 6 cut(s) 236, 299, 363, 426, 489, 617
BtgZI GCGATG 1 cut(s) 504
BtsCI GGATG 2 cut(s) 188, 576
Cac8I GCNNGC 4 cut(s) 105, 287, 410, 640
Csp6I GTAC 9 cut(s) 241, 304, 368, 431, 494, 543, 555, 607, 766
CviAII CATG 1 cut(s) 68
CviQI GTAC 9 cut(s) 241, 304, 368, 431, 494, 543, 555, 607, 766
DdeI CTNAG 1 cut(s) 17
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 589
Eco31I GGTCTC 1 cut(s) 701
EcoT14I CCWWGG 1 cut(s) 589
EcoT22I ATGCAT 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 589
FaeI CATG 1 cut(s) 71
FaiI YATR 5 cut(s) 52, 69, 506, 683, 770
FaqI GGGAC 3 cut(s) 687, 708, 773
FatI CATG 1 cut(s) 67
FauI CCCGC 1 cut(s) 647
Fnu4HI GCNGC 3 cut(s) 24, 55, 165
FokI GGATG 2 cut(s) 195, 563
Fsp4HI GCNGC 3 cut(s) 24, 55, 165
FspBI CTAG 5 cut(s) 141, 590, 692, 773, 787
GluI GCNGC 3 cut(s) 24, 55, 165
HapII CCGG 5 cut(s) 244, 307, 371, 434, 558
Hin1II CATG 1 cut(s) 71
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 2 cut(s) 64, 778
HpaII CCGG 5 cut(s) 244, 307, 371, 434, 558
Hpy188I TCNGA 7 cut(s) 174, 277, 341, 405, 467, 528, 660
Hpy188III TCNNGA 2 cut(s) 645, 742
HpyAV CCTTC 1 cut(s) 169
HpyCH4V TGCA 2 cut(s) 26, 131
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 286, 639
HpyF3I CTNAG 1 cut(s) 17
Hsp92II CATG 1 cut(s) 71
KpnI GGTACC 6 cut(s) 244, 307, 371, 434, 497, 558
LmnI GCTCC 8 cut(s) 227, 277, 294, 341, 354, 405, 467, 528
LpnPI CCDG 6 cut(s) 89, 257, 320, 384, 447, 571
Lsp1109I GCAGC 1 cut(s) 10
LweI GCATC 3 cut(s) 118, 173, 532
MaeI CTAG 5 cut(s) 141, 590, 692, 773, 787
MbiI CCGCTC 1 cut(s) 642
MboII GAAGA 8 cut(s) 86, 137, 185, 249, 312, 376, 439, 501
MhlI GDGCHC 1 cut(s) 667
MluCI AATT 1 cut(s) 569
MlyI GAGTC 2 cut(s) 73, 787
Mph1103I ATGCAT 1 cut(s) 133
MseI TTAA 1 cut(s) 110
MslI CAYNNNNRTG 2 cut(s) 615, 692
MspI CCGG 5 cut(s) 244, 307, 371, 434, 558
MwoI GCNNNNNNNGC 3 cut(s) 137, 286, 639
NlaIII CATG 1 cut(s) 71
NmeAIII GCCGAG 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 133
OliI CACNNNNGTG 2 cut(s) 615, 692
PkrI GCNGC 3 cut(s) 25, 56, 166
PleI GAGTC 2 cut(s) 72, 786
PpsI GAGTC 2 cut(s) 72, 786
PsrI GAACNNNNNNTAC 2 cut(s) 547, 579
RsaI GTAC 9 cut(s) 242, 305, 369, 432, 495, 544, 556, 608, 767
RsaNI GTAC 9 cut(s) 241, 304, 368, 431, 494, 543, 555, 607, 766
RseI CAYNNNNRTG 2 cut(s) 615, 692
SaqAI TTAA 1 cut(s) 110
SatI GCNGC 3 cut(s) 24, 55, 165
SchI GAGTC 2 cut(s) 73, 787
SduI GDGCHC 1 cut(s) 667
SfaNI GCATC 3 cut(s) 118, 173, 532
SfcI CTRYAG 1 cut(s) 681
SmiMI CAYNNNNRTG 2 cut(s) 615, 692
SmlI CTYRAG 3 cut(s) 38, 643, 704
SmoI CTYRAG 3 cut(s) 38, 643, 704
SpeI ACTAGT 1 cut(s) 691
Sse9I AATT 1 cut(s) 569
SsiI CCGC 3 cut(s) 54, 165, 640
SspMI CTAG 5 cut(s) 141, 590, 692, 773, 787
StyI CCWWGG 1 cut(s) 589
TaqI TCGA 1 cut(s) 72
TasI AATT 1 cut(s) 569
TatI WGTACW 1 cut(s) 765
TauI GCSGC 2 cut(s) 57, 167
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TseI GCWGC 1 cut(s) 23
TspGWI ACGGA 1 cut(s) 195
XapI RAATTY 1 cut(s) 569
XmaJI CCTAGG 1 cut(s) 589
XspI CTAG 5 cut(s) 141, 590, 692, 773, 787
Zsp2I ATGCAT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.