Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006252

Physical Location & Seq

Genomic Coordinates Reverse (-)

63004861 .. 63005136

Gene Structure 276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59935

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGAATATCTTGAATATGAGGACTTCTCTTAGACACCTATATCAAGCTAAGATGGAAGAATTACATGCTGAAAGACACCATATTGTAACAGAATTTATCCATTGGAATGAAGAAGCAATCACCAGATTCACCACTTTGTTTTCATCTCACCCTGCAAACCTTGCAGCGAATGCAAAAGCGGTATTCACTTCCCTACTGGAATTCACTTCCCTACTGGACCAAGTTACTCAATATTTAACCGAAGGTCTTGAACAAGCAAAAGACAAGCCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005938 GO:0006810 GO:0006887 GO:0006892 GO:0006893 GO:0008150 GO:0009987 GO:0016192 GO:0031982 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0046903 GO:0048193 GO:0051179 GO:0051234 GO:0070062 GO:0071944 GO:0098876 GO:0099023 GO:0099568 GO:1903561

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec10

Protein Analysis

91

Amino Acids

10.55

Weight (kDa)

5.81

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12370 AT5G12370 AT5G12370
fragaria_vesca	FvH4_7g15330 FvH4_7g15330 FvH4_7g15330 FvH4_7g15330
malus_domestica	MD01G1071200.v1.1 MD07G1131500.v1.1
prunus_persica	Prupe.2G177200_v2.0.a1
pyrus_communis	pycom01g10010 pycom07g12840
rosa_chinensis	RchiOBHm_Chr1g0357661 RchiOBHm_Chr1g0375651 RchiOBHm_Chr1g0375661
rosa_laevigata	RLG00000028010
rosa_multiflora	Rmu_sc0001644.1_g000021 Rmu_sc0004683.1_g000003
rosa_roxburghii	Rroxscaffold_4G00282690 Rroxscaffold_4G00298660
rosa_rugosa	Rorug01G0257500
rosa_samantha	Rh1AG271500 Rh1AG402900 Rh1BG238400 Rh1CG255300 Rh1DG266700
rosa_wichuraiana	Rw1G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	179
AcsI	RAATTY	2 cut(s)	92, 200
AgsI	TTSAA	2 cut(s)	13, 251
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	2 cut(s)	92, 200
AspS9I	GGNCC	1 cut(s)	217
AsuHPI	GGTGA	3 cut(s)	112, 121, 140
AvaII	GGWCC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	1 cut(s)	46
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	217
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
Bse1I	ACTGG	2 cut(s)	201, 219
BseNI	ACTGG	2 cut(s)	201, 219
BseXI	GCAGC	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	175
BspACI	CCGC	1 cut(s)	179
BsrI	ACTGG	2 cut(s)	201, 219
BstAPI	GCANNNNNTGC	2 cut(s)	161, 170
BstDEI	CTNAG	2 cut(s)	29, 48
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 170
BstNSI	RCATGY	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	176
Cfr13I	GGNCC	1 cut(s)	217
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	2 cut(s)	47, 268
CviKI_1	RGCY	2 cut(s)	47, 268
DdeI	CTNAG	2 cut(s)	29, 48
Eco47I	GGWCC	1 cut(s)	217
EcoRI	GAATTC	1 cut(s)	200
FaeI	CATG	1 cut(s)	68
FaiI	YATR	4 cut(s)	17, 40, 66, 81
FatI	CATG	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	165
Fsp4HI	GCNGC	1 cut(s)	165
GluI	GCNGC	1 cut(s)	165
Hin1II	CATG	1 cut(s)	68
HinfI	GANTC	1 cut(s)	126
HphI	GGTGA	3 cut(s)	112, 121, 140
Hpy188III	TCNNGA	2 cut(s)	10, 248
HpyAV	CCTTC	1 cut(s)	236
HpyCH4V	TGCA	3 cut(s)	155, 164, 173
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 170
HpyF3I	CTNAG	2 cut(s)	29, 48
Hsp92II	CATG	1 cut(s)	68
LpnPI	CCDG	4 cut(s)	136, 165, 182, 200
Lsp1109I	GCAGC	1 cut(s)	176
MaeIII	GTNAC	2 cut(s)	85, 223
MboII	GAAGA	2 cut(s)	68, 122
MluCI	AATT	3 cut(s)	59, 92, 200
MnlI	CCTC	1 cut(s)	12
MseI	TTAA	1 cut(s)	236
MslI	CAYNNNNRTG	1 cut(s)	105
Mva1269I	GAATGC	1 cut(s)	175
MwoI	GCNNNNNNNGC	2 cut(s)	161, 170
NlaIII	CATG	1 cut(s)	68
NspI	RCATGY	1 cut(s)	68
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	1 cut(s)	165
Sau96I	GGNCC	1 cut(s)	217
SetI	ASST	4 cut(s)	39, 49, 162, 247
SinI	GGWCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	3 cut(s)	59, 92, 200
SsiI	CCGC	1 cut(s)	179
SspI	AATATT	1 cut(s)	233
TasI	AATT	3 cut(s)	59, 92, 200
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TseI	GCWGC	1 cut(s)	164
TspDTI	ATGAA	3 cut(s)	17, 123, 132
VpaK11BI	GGWCC	1 cut(s)	217
XapI	RAATTY	2 cut(s)	92, 200
XceI	RCATGY	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.