Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006252

Physical Location & Seq

Genomic Coordinates Forward (+)

18435238 .. 18444145

Gene Structure 8908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00298660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2568 bp

ATGATGAAAGAGAGTAGAGATGGAATCAAGAGCGACAGACGTGCAAAAAATTCGTCAGTTAGCTCACTTCCACTCATCTTGGACATAGACGACTTTAAGGGTGAATTTTCATTTGACGCATTGTTTGGAAACCTGGTAAATGATCTCCTCCCATCCTTTCAAGAAGATGAAACAGATTCATCTGAGGGTCATAGCAACATCAGTGGGACTGATTCTTTGCCAAATGGACATATGCGAGCCCCGTCAGATGCAACAAGATTTGCGCAGGGACTGTCTGACCCTTTATTTCCAGAAGTAGATAAGATCTTATCTCTGTTCAAGGATTCTTGTAAAGAGTTGGTTGATCTCCAGACACAGATTGATGGAAAGTTATTAAATCTGAAGAAGGATGTTTCTGTACAAGATTCTAAGCACCGCAAGACACTTACTGAGCTTGAAAAAGGAGTAGACGGCTTGTTTGGTAGCTTTGCCAGGTTGGATTCACGTATATCAAGTGTTGGACAGACTGCTGCAAAAATAGGAGATCATCTGCAGGTGAAGTTTGTCCCATGCTTGATTGCTAATGGACTGTTTGCTTCCAAAGTTAGTGCAGATGCTCAGCGGGAAACTGCTAGTCAATCAATAGAGCTCATAAAGTACTTGATGGAGTTTAATAGCAGCCCAGGCGATCTAATGGAACTTTCACCTCTATTTTCCGATGACAGTCGTGTTGCAGAGGCTGCTAAAATTGCACAAAAACTGCGGGCATTTGCTGAGGAAGATATTGGAAGAACTGTACCATCAGTCATGGGCAATGCAGCCGCTAGCAGAGGATTAGAAGTTGCAGTTGCTAATCTTCAGGAGTACTGTAACGAATTGGAGAACAGACTGCTAGCTCGATTTGATGCCGCATCACAGAGAAGAGATTTGTCTACCATGGCAGAATGTGCTAAAATTTTATCTCAGTTTAACAGGGGAACTAGTGCCATGCAACATTATGTGGCAACACGTCCAATGTTTATTGACGTGGAAGTCATGAATGCAGATACCAGATTGGTTCTTGGTGACGAGGGTTCCCAGGCTAGTCCTAGCAATGTTTCTCGTGGACTTTCTTCCTTGTACAAAGAAATCACAGATACTGTACGGAAGGAAGCAGCAACAATTATGGCTGTATTCCCTTCTCCTAATGAAGTTATGTCAATCTTAGTGCAGCGTGTTTTAGAGCAGAGAATTACAGCTTTATTGGACAAATTATTGGTAAAACCATCTCTTGTGAACCTACCTCCTATGGAAGAAGGGGGCCTTCTATTATATCTTAGAATGCTCGCGGTGGCATATGAGAAGACACAAGATCTTGCTAAGGACCTGCGAGCCGTGGGATGTGGTGACTTGGATGTCGAGGGCCTCACAGAGTCTTTGTTTTCTGCTCACAAGGATGGATATCCTGAACATGAGCAGGCCTCTCTTAAACAACTATATCAAGCTAAGATGGCAGAACTACGTGCTGAAAGCCAGCAGGCATCTGAATCAAGTGGAACAATCGGGCGCTCAAAAGGGGCAGCAGTAGCATCTTCCAACCAGCAAATATCTGTCACTGTTGTGACAGAGTTTGTTCGTTGGAATGAAGAAGCAATTACCAGATGCACTCTGTTCTCATCCCAACCTGCAACCCTTGCAGCAAATGTAAAATCGGTGTTCACTTCCCTCCTTGGCCAAGTCAGTAAATATATAACAGAAGGTCTTGAACGAGCAAGAGACAGCTTGACTGAAGCTGCATCTTTAAGGGAAAGATTTGTATTGGGTACTAGTATGAGTAGAAGGGTGGCTGCTGCAGCTGCTTCTGCTGCAGAAGCTGCTGCTGCTGCTGGTGAAAGCAGTTTCAGATCTTTCATGGTTGCCGTACAACGTTGTGGTAGCAGTGTGGCTATAGTTCAGCAATATTTTTCAAATTCTATCTCTCGGCTTCTGCTCCCTGTTGATGGAGCGCATGCTGCTTCATGTGAAGAAATGGGAACAGCTATGTCAAGTGCGGAGGGTGCTGCATATAAAGGGCTTCAACAATGTATTGAAACTGTGATGGCTGAGGTGGAGCGGTTACTTTCTTCTGAACAGAAGGCAACAGATTACAGATCACCAGAAGATGGATTTGCTCCTGATCATCGGCCGACAAATGCCTGCACGAGAGTTGTAGCTTATCTTTCCCGTATACTAGAATCTGCATTCTCAGCACTTGAGGGTCTTAACAAGCAAGCATTTTTGACTGAATTAGGAAATCGCTTGCATAAAGGGCTACTAACACATTGGCAGAAGTTCACTTTCAATCCCAGTGGAGGATTACGGCTGAAGCGTGACATAACTGAATATGGAGAATTTGTGCGCAGTTTTAACGCTCCTTCTGTTGATGAAAAATTTGAATTGCTTGGCATAATGGCCAATGTCTTTATTGTTGCTCCTGAAAGTCTCTCAACTCTGTTTGAGGGTACCCCCAGTATACGGAAAGATGCACAGAGGTTTATTGAGCTTAGAGATGACTACAAGAGTGCGAAACTTGCTTCCAGACTTAGTTCCTTGTGGGCAAGCTCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005938 GO:0006810 GO:0006887 GO:0006892 GO:0006893 GO:0008150 GO:0009987 GO:0016192 GO:0031982 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0046903 GO:0048193 GO:0051179 GO:0051234 GO:0070062 GO:0071944 GO:0098876 GO:0099023 GO:0099568 GO:1903561

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec10

Protein Analysis

855

Amino Acids

93.2

Weight (kDa)

5.36

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec10_N	PF20667	100 - 178	1.9e-17	Exocyst complex component Sec10, N-terminal
Sec10_HB	PF07393	239 - 845	3.9e-153	Exocyst complex component Sec10-like, alpha-helical bundle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12370 AT5G12370 AT5G12370
fragaria_vesca	FvH4_7g15330 FvH4_7g15330 FvH4_7g15330 FvH4_7g15330
malus_domestica	MD01G1071200.v1.1 MD07G1131500.v1.1
prunus_persica	Prupe.2G177200_v2.0.a1
pyrus_communis	pycom01g10010 pycom07g12840
rosa_chinensis	RchiOBHm_Chr1g0357661 RchiOBHm_Chr1g0375651 RchiOBHm_Chr1g0375661
rosa_laevigata	RLG00000028010
rosa_multiflora	Rmu_sc0001644.1_g000021 Rmu_sc0004683.1_g000003
rosa_roxburghii	Rroxscaffold_4G00282690 Rroxscaffold_4G00298660
rosa_rugosa	Rorug01G0257500
rosa_samantha	Rh1AG271500 Rh1AG402900 Rh1BG238400 Rh1CG255300 Rh1DG266700
rosa_wichuraiana	Rw1G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	523
AasI	GACNNNNNNGTC	2 cut(s)	1010, 1373
Acc16I	TGCGCA	2 cut(s)	264, 2357
Acc36I	ACCTGC	3 cut(s)	523, 1353, 1651
Acc65I	GGTACC	1 cut(s)	2459
AccB1I	GGYRCC	1 cut(s)	2459
AccB7I	CCANNNNNTGG	1 cut(s)	2120
AccBSI	CCGCTC	1 cut(s)	2071
AccI	GTMKAC	4 cut(s)	447, 911, 2185, 2470
AccII	CGCG	1 cut(s)	1307
AciI	CCGC	8 cut(s)	415, 601, 742, 801, 888, 1307, 2009, 2071
AclI	AACGTT	1 cut(s)	1885
AcoI	YGGCCR	3 cut(s)	1690, 2141, 2409
AcsI	RAATTY	6 cut(s)	49, 104, 933, 1927, 2348, 2387
AcuI	CTGAAG	4 cut(s)	401, 821, 1767, 2342
AfaI	GTAC	9 cut(s)	399, 638, 777, 845, 1100, 1122, 1783, 1881, 2461
AfiI	CCNNNNNNNGG	4 cut(s)	1958, 2120, 2309, 2472
AflIII	ACRYGT	1 cut(s)	986
AgsI	TTSAA	9 cut(s)	161, 319, 437, 1724, 1926, 2036, 2048, 2299, 2393
AhlI	ACTAGT	2 cut(s)	959, 1784
AjiI	CACGTC	3 cut(s)	41, 989, 1006
AjnI	CCWGG	4 cut(s)	132, 470, 661, 1056
AleI	CACNNNNGTG	1 cut(s)	1577
Alw21I	GWGCWC	1 cut(s)	630
Alw26I	GTCTC	2 cut(s)	1728, 2444
AlwNI	CAGNNNCTG	4 cut(s)	271, 719, 1118, 1832
AoxI	GGCC	6 cut(s)	1279, 1381, 1437, 1690, 2141, 2409
ApoI	RAATTY	6 cut(s)	49, 104, 933, 1927, 2348, 2387
ArsI	GACNNNNNNTTYG	8 cut(s)	38, 70, 107, 139, 199, 231, 440, 472
Asp718I	GGTACC	1 cut(s)	2459
AspLEI	GCGC	4 cut(s)	265, 1527, 1966, 2358
AspS9I	GGNCC	3 cut(s)	1279, 1342, 1381
AsuHPI	GGTGA	7 cut(s)	113, 547, 675, 1055, 1376, 1859, 2103
AsuNHI	GCTAGC	2 cut(s)	803, 871
AvaII	GGWCC	1 cut(s)	1342
BalI	TGGCCA	2 cut(s)	1692, 2411
BanI	GGYRCC	1 cut(s)	2459
BanII	GRGCYC	2 cut(s)	241, 630
BauI	CACGAG	2 cut(s)	1080, 2158
BbsI	GAAGAC	1 cut(s)	1328
Bbv12I	GWGCWC	1 cut(s)	630
BbvCI	CCTCAGC	2 cut(s)	753, 2061
BceAI	ACGGC	4 cut(s)	466, 1337, 1862, 2333
BcgI	CGANNNNNNTGC	4 cut(s)	23, 33, 57, 67
BciT130I	CCWGG	4 cut(s)	134, 472, 663, 1058
BclI	TGATCA	1 cut(s)	2134
BcoDI	GTCTC	2 cut(s)	1728, 2444
BcuI	ACTAGT	2 cut(s)	959, 1784
BfaI	CTAG	8 cut(s)	612, 804, 872, 960, 1062, 1068, 1785, 2189
BfmI	CTRYAG	4 cut(s)	530, 1809, 1824, 1905
BfoI	RGCGCY	1 cut(s)	1528
BfuAI	ACCTGC	3 cut(s)	523, 1353, 1651
BglII	AGATCT	3 cut(s)	303, 1330, 1862
BlpI	GCTNAGC	1 cut(s)	597
BmcAI	AGTACT	2 cut(s)	638, 845
Bme1390I	CCNGG	4 cut(s)	134, 472, 663, 1058
Bme18I	GGWCC	1 cut(s)	1342
BmgBI	CACGTC	3 cut(s)	41, 989, 1006
BmgT120I	GGNCC	3 cut(s)	1279, 1342, 1381
BmiI	GGNNCC	3 cut(s)	1054, 1280, 2461
BmrFI	CCNGG	4 cut(s)	134, 472, 663, 1058
BmrI	ACTGGG	2 cut(s)	2298, 2460
BmsI	GCATC	9 cut(s)	238, 583, 874, 899, 1508, 1556, 1610, 1763, 2470
BmtI	GCTAGC	2 cut(s)	807, 875
BmuI	ACTGGG	2 cut(s)	2298, 2460
BpiI	GAAGAC	1 cut(s)	1328
BplI	GAGNNNNNCTC	2 cut(s)	1424, 1456
BpmI	CTGGAG	1 cut(s)	332
Bpu10I	CCTNAGC	4 cut(s)	753, 1338, 2061, 2560
Bpu1102I	GCTNAGC	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	2231
BsaAI	YACGTR	2 cut(s)	485, 1481
BsaBI	GATNNNNATC	1 cut(s)	1419
BsaJI	CCNNGG	5 cut(s)	661, 915, 1056, 1353, 1687
BsaXI	ACNNNNNCTCC	2 cut(s)	2337, 2367
Bsc4I	CCNNNNNNNGG	4 cut(s)	1958, 2120, 2309, 2472
Bse1I	ACTGG	2 cut(s)	2304, 2466
Bse3DI	GCAATG	2 cut(s)	799, 1078
Bse8I	GATNNNNATC	1 cut(s)	1419
BseBI	CCWGG	4 cut(s)	134, 472, 663, 1058
BseDI	CCNNGG	5 cut(s)	661, 915, 1056, 1353, 1687
BseGI	GGATG	6 cut(s)	152, 394, 1364, 1378, 1420, 1634
BseJI	GATNNNNATC	1 cut(s)	1419
BseLI	CCNNNNNNNGG	4 cut(s)	1958, 2120, 2309, 2472
BseMI	GCAATG	2 cut(s)	799, 1078
BseMII	CTCAG	7 cut(s)	174, 420, 611, 744, 956, 2052, 2217
BseNI	ACTGG	2 cut(s)	2304, 2466
BseRI	GAGGAG	1 cut(s)	137
BseX3I	CGGCCG	1 cut(s)	2141
BsgI	GTGCAG	3 cut(s)	609, 1208, 2140
Bsh1236I	CGCG	1 cut(s)	1307
Bsh1285I	CGRYCG	1 cut(s)	2144
BshFI	GGCC	6 cut(s)	1281, 1383, 1439, 1692, 2143, 2411
BshNI	GGYRCC	1 cut(s)	2459
BsiEI	CGRYCG	1 cut(s)	2144
BsiHKAI	GWGCWC	1 cut(s)	630
BslFI	GGGAC	3 cut(s)	220, 282, 530
BslI	CCNNNNNNNGG	4 cut(s)	1958, 2120, 2309, 2472
BsmAI	GTCTC	2 cut(s)	1728, 2444
BsmFI	GGGAC	3 cut(s)	220, 282, 530
BsmI	GAATGC	3 cut(s)	1024, 1305, 2198
BsnI	GGCC	6 cut(s)	1281, 1383, 1439, 1692, 2143, 2411
Bsp1286I	GDGCHC	2 cut(s)	241, 630
Bsp1407I	TGTACA	2 cut(s)	397, 1098
Bsp143I	GATC	9 cut(s)	142, 303, 343, 523, 667, 1330, 1862, 2108, 2134
Bsp1720I	GCTNAGC	1 cut(s)	597
Bsp19I	CCATGG	1 cut(s)	915
BspACI	CCGC	8 cut(s)	415, 601, 742, 801, 888, 1307, 2009, 2071
BspANI	GGCC	6 cut(s)	1281, 1383, 1439, 1692, 2143, 2411
BspCNI	CTCAG	7 cut(s)	175, 421, 610, 745, 955, 2053, 2216
BspFNI	CGCG	1 cut(s)	1307
BspHI	TCATGA	1 cut(s)	1014
BspLI	GGNNCC	3 cut(s)	1054, 1280, 2461
BspMAI	CTGCAG	3 cut(s)	534, 1813, 1828
BspMI	ACCTGC	3 cut(s)	523, 1353, 1651
BspOI	GCTAGC	2 cut(s)	807, 875
BspT107I	GGYRCC	1 cut(s)	2459
BsrBI	CCGCTC	1 cut(s)	2071
BsrDI	GCAATG	2 cut(s)	799, 1078
BsrGI	TGTACA	2 cut(s)	397, 1098
BsrI	ACTGG	2 cut(s)	2304, 2466
BssECI	CCNNGG	5 cut(s)	661, 915, 1056, 1353, 1687
BssMI	GATC	9 cut(s)	142, 303, 343, 523, 667, 1330, 1862, 2108, 2134
BssNAI	GTATAC	2 cut(s)	2186, 2471
BssSI	CACGAG	2 cut(s)	1080, 2158
BssT1I	CCWWGG	2 cut(s)	915, 1687
Bst1107I	GTATAC	2 cut(s)	2186, 2471
Bst2BI	CACGAG	2 cut(s)	1080, 2158
Bst2UI	CCWGG	4 cut(s)	134, 472, 663, 1058
Bst4CI	ACNGT	8 cut(s)	273, 570, 704, 775, 848, 1120, 1576, 2053
Bst6I	CTCTTC	1 cut(s)	895
BstAPI	GCANNNNNTGC	4 cut(s)	719, 926, 1652, 1832
BstAUI	TGTACA	2 cut(s)	397, 1098
BstBAI	YACGTR	2 cut(s)	485, 1481
BstDSI	CCRYGG	2 cut(s)	915, 1353
BstF5I	GGATG	6 cut(s)	152, 394, 1364, 1378, 1420, 1634
BstFNI	CGCG	1 cut(s)	1307
BstH2I	RGCGCY	1 cut(s)	1528
BstHHI	GCGC	4 cut(s)	265, 1527, 1966, 2358
BstKTI	GATC	9 cut(s)	145, 306, 346, 526, 670, 1333, 1865, 2111, 2137
BstMAI	GTCTC	2 cut(s)	1728, 2444
BstMBI	GATC	9 cut(s)	142, 303, 343, 523, 667, 1330, 1862, 2108, 2134
BstMCI	CGRYCG	1 cut(s)	2144
BstNI	CCWGG	4 cut(s)	134, 472, 663, 1058
BstNSI	RCATGY	1 cut(s)	1970
BstSCI	CCNGG	4 cut(s)	132, 470, 661, 1056
BstSFI	CTRYAG	4 cut(s)	530, 1809, 1824, 1905
BstUI	CGCG	1 cut(s)	1307
BstV2I	GAAGAC	1 cut(s)	1328
BstX2I	RGATCY	3 cut(s)	303, 1330, 1862
BstYI	RGATCY	3 cut(s)	303, 1330, 1862
BstZ17I	GTATAC	2 cut(s)	2186, 2471
BstZI	CGGCCG	1 cut(s)	2141
BsuRI	GGCC	6 cut(s)	1281, 1383, 1439, 1692, 2143, 2411
BtgI	CCRYGG	2 cut(s)	915, 1353
BtrI	CACGTC	3 cut(s)	41, 989, 1006
BtsCI	GGATG	6 cut(s)	152, 394, 1364, 1378, 1420, 1634
BtsI	GCAGTG	1 cut(s)	1903
BtsIMutI	CAGTG	4 cut(s)	208, 1572, 1903, 2311
BveI	ACCTGC	3 cut(s)	523, 1353, 1651
CaiI	CAGNNNCTG	4 cut(s)	271, 719, 1118, 1832
CciI	TCATGA	1 cut(s)	1014
CfoI	GCGC	4 cut(s)	265, 1527, 1966, 2358
Cfr13I	GGNCC	3 cut(s)	1279, 1342, 1381
CseI	GACGC	1 cut(s)	125
CsiI	ACCWGGT	1 cut(s)	132
Csp6I	GTAC	9 cut(s)	398, 637, 776, 844, 1099, 1121, 1782, 1880, 2460
CspCI	CAANNNNNGTGG	6 cut(s)	60, 95, 184, 219, 2287, 2322
CviAII	CATG	9 cut(s)	549, 787, 916, 967, 1015, 1430, 1870, 1967, 1977
CviQI	GTAC	9 cut(s)	398, 637, 776, 844, 1099, 1121, 1782, 1880, 2460
DpnI	GATC	9 cut(s)	144, 305, 345, 525, 669, 1332, 1864, 2110, 2136
DpnII	GATC	9 cut(s)	142, 303, 343, 523, 667, 1330, 1862, 2108, 2134
DrdI	GACNNNNNNGTC	2 cut(s)	1010, 1373
DseDI	GACNNNNNNGTC	2 cut(s)	1010, 1373
EaeI	YGGCCR	3 cut(s)	1690, 2141, 2409
EagI	CGGCCG	1 cut(s)	2141
Eam1104I	CTCTTC	1 cut(s)	895
EarI	CTCTTC	1 cut(s)	895
Ecl136II	GAGCTC	1 cut(s)	628
EclXI	CGGCCG	1 cut(s)	2141
Eco130I	CCWWGG	2 cut(s)	915, 1687
Eco147I	AGGCCT	1 cut(s)	1439
Eco24I	GRGCYC	2 cut(s)	241, 630
Eco32I	GATATC	1 cut(s)	1421
Eco47I	GGWCC	1 cut(s)	1342
Eco52I	CGGCCG	1 cut(s)	2141
Eco53kI	GAGCTC	1 cut(s)	628
Eco57I	CTGAAG	4 cut(s)	401, 821, 1767, 2342
EcoICRI	GAGCTC	1 cut(s)	628
EcoO109I	RGGNCCY	3 cut(s)	1279, 1342, 1381
EcoRII	CCWGG	4 cut(s)	132, 470, 661, 1056
EcoRV	GATATC	1 cut(s)	1421
EcoT14I	CCWWGG	2 cut(s)	915, 1687
EcoT38I	GRGCYC	2 cut(s)	241, 630
ErhI	CCWWGG	2 cut(s)	915, 1687
FaeI	CATG	9 cut(s)	552, 790, 919, 970, 1018, 1433, 1873, 1970, 1980
FalI	AAGNNNNNCTT	2 cut(s)	1266, 1298
FaqI	GGGAC	3 cut(s)	220, 282, 530
FatI	CATG	9 cut(s)	548, 786, 915, 966, 1014, 1429, 1869, 1966, 1976
FauI	CCCGC	2 cut(s)	594, 735
FauNDI	CATATG	2 cut(s)	231, 1315
FbaI	TGATCA	1 cut(s)	2134
FblI	GTMKAC	4 cut(s)	447, 911, 2185, 2470
FokI	GGATG	6 cut(s)	139, 401, 1371, 1385, 1427, 1621
FriOI	GRGCYC	2 cut(s)	241, 630
FspBI	CTAG	8 cut(s)	612, 804, 872, 960, 1062, 1068, 1785, 2189
FspI	TGCGCA	2 cut(s)	264, 2357
GlaI	GCGC	4 cut(s)	264, 1526, 1965, 2357
GsuI	CTGGAG	1 cut(s)	332
HaeII	RGCGCY	1 cut(s)	1528
HaeIII	GGCC	6 cut(s)	1281, 1383, 1439, 1692, 2143, 2411
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	4 cut(s)	265, 1527, 1966, 2358
Hin1II	CATG	9 cut(s)	552, 790, 919, 970, 1018, 1433, 1873, 1970, 1980
Hin6I	GCGC	4 cut(s)	263, 1525, 1964, 2356
HinP1I	GCGC	4 cut(s)	263, 1525, 1964, 2356
HinfI	GANTC	9 cut(s)	24, 176, 212, 323, 404, 479, 1391, 1505, 2192
HphI	GGTGA	7 cut(s)	113, 547, 675, 1055, 1376, 1859, 2103
Hpy166II	GTNNAC	8 cut(s)	448, 912, 1085, 1255, 1677, 2186, 2292, 2471
Hpy188I	TCNGA	8 cut(s)	184, 247, 277, 381, 697, 1504, 1862, 2086
Hpy8I	GTNNAC	8 cut(s)	448, 912, 1085, 1255, 1677, 2186, 2292, 2471
HpyAV	CCTTC	9 cut(s)	379, 1120, 1167, 1268, 1292, 1709, 1791, 2086, 2382
HpyCH4III	ACNGT	8 cut(s)	273, 570, 704, 775, 848, 1120, 1576, 2053
HpyCH4IV	ACGT	6 cut(s)	40, 484, 988, 1005, 1480, 1885
HpySE526I	ACGT	6 cut(s)	40, 484, 988, 1005, 1480, 1885
Hsp92II	CATG	9 cut(s)	552, 790, 919, 970, 1018, 1433, 1873, 1970, 1980
HspAI	GCGC	4 cut(s)	263, 1525, 1964, 2356
KpnI	GGTACC	1 cut(s)	2463
Ksp22I	TGATCA	1 cut(s)	2134
Kzo9I	GATC	9 cut(s)	142, 303, 343, 523, 667, 1330, 1862, 2108, 2134
LmnI	GCTCC	6 cut(s)	1953, 1961, 2068, 2134, 2374, 2434
LweI	GCATC	9 cut(s)	238, 583, 874, 899, 1508, 1556, 1610, 1763, 2470
MabI	ACCWGGT	1 cut(s)	132
MaeI	CTAG	8 cut(s)	612, 804, 872, 960, 1062, 1068, 1785, 2189
MaeII	ACGT	6 cut(s)	40, 484, 988, 1005, 1480, 1885
MaeIII	GTNAC	7 cut(s)	848, 1043, 1364, 1570, 1579, 2073, 2327
MalI	GATC	9 cut(s)	144, 305, 345, 525, 669, 1332, 1864, 2110, 2136
MbiI	CCGCTC	1 cut(s)	2071
MboI	GATC	9 cut(s)	142, 303, 343, 523, 667, 1330, 1862, 2108, 2134
MflI	RGATCY	3 cut(s)	303, 1330, 1862
MhlI	GDGCHC	2 cut(s)	241, 630
MlsI	TGGCCA	2 cut(s)	1692, 2411
MluNI	TGGCCA	2 cut(s)	1692, 2411
MlyI	GAGTC	1 cut(s)	1400
MmeI	TCCRAC	4 cut(s)	456, 478, 1577, 1578
Mox20I	TGGCCA	2 cut(s)	1692, 2411
MscI	TGGCCA	2 cut(s)	1692, 2411
MseI	TTAA	8 cut(s)	96, 374, 651, 948, 1446, 1760, 2220, 2364
MslI	CAYNNNNRTG	2 cut(s)	1413, 1577
Msp20I	TGGCCA	2 cut(s)	1692, 2411
MspA1I	CMGCKG	2 cut(s)	601, 1814
MspR9I	CCNGG	4 cut(s)	134, 472, 663, 1058
Mva1269I	GAATGC	3 cut(s)	1024, 1305, 2198
MvaI	CCWGG	4 cut(s)	134, 472, 663, 1058
MvnI	CGCG	1 cut(s)	1307
NcoI	CCATGG	1 cut(s)	915
NdeI	CATATG	2 cut(s)	231, 1315
NdeII	GATC	9 cut(s)	142, 303, 343, 523, 667, 1330, 1862, 2108, 2134
NheI	GCTAGC	2 cut(s)	803, 871
NlaIII	CATG	9 cut(s)	552, 790, 919, 970, 1018, 1433, 1873, 1970, 1980
NlaIV	GGNNCC	3 cut(s)	1054, 1280, 2461
NmeAIII	GCCGAG	1 cut(s)	1918
NmuCI	GTSAC	5 cut(s)	1043, 1364, 1570, 1579, 2327
NsbI	TGCGCA	2 cut(s)	264, 2357
NspI	RCATGY	1 cut(s)	1970
OliI	CACNNNNGTG	1 cut(s)	1577
PaeI	GCATGC	1 cut(s)	1970
PagI	TCATGA	1 cut(s)	1014
PaqCI	CACCTGC	1 cut(s)	523
PceI	AGGCCT	1 cut(s)	1439
PcsI	WCGNNNNNNNCGW	1 cut(s)	2323
PctI	GAATGC	3 cut(s)	1024, 1305, 2198
PfeI	GAWTC	8 cut(s)	24, 176, 212, 323, 404, 479, 1505, 2192
PflMI	CCANNNNNTGG	1 cut(s)	2120
PleI	GAGTC	1 cut(s)	1399
PpsI	GAGTC	1 cut(s)	1399
Ppu21I	YACGTR	2 cut(s)	485, 1481
PpuMI	RGGWCCY	1 cut(s)	1342
Psp124BI	GAGCTC	1 cut(s)	630
Psp1406I	AACGTT	1 cut(s)	1885
Psp5II	RGGWCCY	1 cut(s)	1342
Psp6I	CCWGG	4 cut(s)	132, 470, 661, 1056
PspGI	CCWGG	4 cut(s)	132, 470, 661, 1056
PspN4I	GGNNCC	3 cut(s)	1054, 1280, 2461
PspPI	GGNCC	3 cut(s)	1279, 1342, 1381
PspPPI	RGGWCCY	1 cut(s)	1342
PstI	CTGCAG	3 cut(s)	534, 1813, 1828
PstNI	CAGNNNCTG	4 cut(s)	271, 719, 1118, 1832
PsuI	RGATCY	3 cut(s)	303, 1330, 1862
PvuII	CAGCTG	1 cut(s)	1814
RsaI	GTAC	9 cut(s)	399, 638, 777, 845, 1100, 1122, 1783, 1881, 2461
RsaNI	GTAC	9 cut(s)	398, 637, 776, 844, 1099, 1121, 1782, 1880, 2460
RseI	CAYNNNNRTG	2 cut(s)	1413, 1577
SacI	GAGCTC	1 cut(s)	630
SaqAI	TTAA	8 cut(s)	96, 374, 651, 948, 1446, 1760, 2220, 2364
Sau3AI	GATC	9 cut(s)	142, 303, 343, 523, 667, 1330, 1862, 2108, 2134
Sau96I	GGNCC	3 cut(s)	1279, 1342, 1381
ScaI	AGTACT	2 cut(s)	638, 845
SchI	GAGTC	1 cut(s)	1400
ScrFI	CCNGG	4 cut(s)	134, 472, 663, 1058
SduI	GDGCHC	2 cut(s)	241, 630
SexAI	ACCWGGT	1 cut(s)	132
SfaNI	GCATC	9 cut(s)	238, 583, 874, 899, 1508, 1556, 1610, 1763, 2470
SfcI	CTRYAG	4 cut(s)	530, 1809, 1824, 1905
SinI	GGWCC	1 cut(s)	1342
SmiMI	CAYNNNNRTG	2 cut(s)	1413, 1577
SmlI	CTYRAG	1 cut(s)	2210
SmoI	CTYRAG	1 cut(s)	2210
SpeI	ACTAGT	2 cut(s)	959, 1784
SphI	GCATGC	1 cut(s)	1970
SseBI	AGGCCT	1 cut(s)	1439
SsiI	CCGC	8 cut(s)	415, 601, 742, 801, 888, 1307, 2009, 2071
SspI	AATATT	1 cut(s)	1919
SspMI	CTAG	8 cut(s)	612, 804, 872, 960, 1062, 1068, 1785, 2189
SstI	GAGCTC	1 cut(s)	630
StuI	AGGCCT	1 cut(s)	1439
StyD4I	CCNGG	4 cut(s)	132, 470, 661, 1056
StyI	CCWWGG	2 cut(s)	915, 1687
TaaI	ACNGT	8 cut(s)	273, 570, 704, 775, 848, 1120, 1576, 2053
TaiI	ACGT	6 cut(s)	43, 487, 991, 1008, 1483, 1888
TaqI	TCGA	2 cut(s)	877, 1377
TatI	WGTACW	4 cut(s)	397, 636, 843, 1098
TauI	GCSGC	2 cut(s)	803, 890
TfiI	GAWTC	8 cut(s)	24, 176, 212, 323, 404, 479, 1505, 2192
Tru1I	TTAA	8 cut(s)	96, 374, 651, 948, 1446, 1760, 2220, 2364
Tru9I	TTAA	8 cut(s)	96, 374, 651, 948, 1446, 1760, 2220, 2364
TscAI	CASTG	4 cut(s)	208, 1579, 1903, 2311
TseFI	GTSAC	5 cut(s)	1043, 1364, 1570, 1579, 2327
Tsp45I	GTSAC	5 cut(s)	1043, 1364, 1570, 1579, 2327
TspGWI	ACGGA	2 cut(s)	1138, 2488
TspRI	CASTG	4 cut(s)	208, 1579, 1903, 2311
Van91I	CCANNNNNTGG	1 cut(s)	2120
VpaK11BI	GGWCC	1 cut(s)	1342
XapI	RAATTY	6 cut(s)	49, 104, 933, 1927, 2348, 2387
XceI	RCATGY	1 cut(s)	1970
XmiI	GTMKAC	4 cut(s)	447, 911, 2185, 2470
XspI	CTAG	8 cut(s)	612, 804, 872, 960, 1062, 1068, 1785, 2189
ZrmI	AGTACT	2 cut(s)	638, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.