Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0006252

Physical Location & Seq

Genomic Coordinates Reverse (-)

62962873 .. 62963838

Gene Structure 966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG402900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAGTCATGCTGAAGAGGCATCTGAATTTGCAAACAAGTTGATGGCATTAACATTTGCCGAGGAAGATGCATTAGTAGCTAGCAGGGGATTAGAAGTTGCAGCTGCTAATCTGAGGGACTACTGCTACAAATTGGAGAGGAAACTGCTAGCTCGTTTTGAAGTGTATCACAGAGAAGAGATCGACTTGTCTGACATGGTAGAATGTGCTAAAATTTTATCCAAACTCAACAAGGGAACTAGTACTATTATGCAACATTATGTGACTTCTCTTAGACACCTATATCAAGCTAAGATGGAAGAACTACATGCTGAAAGACAACATATTGTAACAGAATTTATCCATTGGAATGAAGAAGCAATCACCAGATTCACCACTTTGTTTTCATCTCACCCTGCAAACCTTGCAGCGAATGCAAAAGCGGTATTCACTTCCCTACTGGACCAAGTTACTCAATATTTAACCGAAGGTCTTGAACAAGCAAAAGACAAGCCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005938 GO:0006810 GO:0006887 GO:0006892 GO:0006893 GO:0008150 GO:0009987 GO:0016192 GO:0031982 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0046903 GO:0048193 GO:0051179 GO:0051234 GO:0070062 GO:0071944 GO:0098876 GO:0099023 GO:0099568 GO:1903561

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec10

Protein Analysis

166

Amino Acids

18.99

Weight (kDa)

5.48

Isoelectric Point (pI)

44.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec10_HB	PF07393	10 - 90	1.2e-11	Exocyst complex component Sec10-like, alpha-helical bundle
Sec10_HB	PF07393	108 - 162	7.7e-07	Exocyst complex component Sec10-like, alpha-helical bundle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12370 AT5G12370 AT5G12370
fragaria_vesca	FvH4_7g15330 FvH4_7g15330 FvH4_7g15330 FvH4_7g15330
malus_domestica	MD01G1071200.v1.1 MD07G1131500.v1.1
prunus_persica	Prupe.2G177200_v2.0.a1
pyrus_communis	pycom01g10010 pycom07g12840
rosa_chinensis	RchiOBHm_Chr1g0357661 RchiOBHm_Chr1g0375651 RchiOBHm_Chr1g0375661
rosa_laevigata	RLG00000028010
rosa_multiflora	Rmu_sc0001644.1_g000021 Rmu_sc0004683.1_g000003
rosa_roxburghii	Rroxscaffold_4G00282690 Rroxscaffold_4G00298660
rosa_rugosa	Rorug01G0257500
rosa_samantha	Rh1AG271500 Rh1AG402900 Rh1BG238400 Rh1CG255300 Rh1DG266700
rosa_wichuraiana	Rw1G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	422
AcsI	RAATTY	3 cut(s)	26, 213, 335
AcuI	CTGAAG	1 cut(s)	33
AfaI	GTAC	1 cut(s)	244
AgsI	TTSAA	2 cut(s)	161, 476
AhlI	ACTAGT	1 cut(s)	239
AluBI	AGCT	4 cut(s)	80, 104, 152, 290
AluI	AGCT	4 cut(s)	80, 104, 152, 290
ApeKI	GCWGC	3 cut(s)	101, 104, 407
ApoI	RAATTY	3 cut(s)	26, 213, 335
AspS9I	GGNCC	1 cut(s)	442
AsuHPI	GGTGA	3 cut(s)	355, 364, 383
AsuNHI	GCTAGC	2 cut(s)	80, 148
AvaII	GGWCC	1 cut(s)	442
BbvI	GCAGC	3 cut(s)	91, 113, 419
BccI	CCATC	2 cut(s)	37, 289
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BcuI	ACTAGT	1 cut(s)	239
BfaI	CTAG	3 cut(s)	81, 149, 240
BisI	GCNGC	3 cut(s)	102, 105, 408
BlsI	GCNGC	3 cut(s)	103, 106, 409
BmcAI	AGTACT	1 cut(s)	244
Bme18I	GGWCC	1 cut(s)	442
BmgT120I	GGNCC	1 cut(s)	442
BmsI	GCATC	2 cut(s)	29, 58
BmtI	GCTAGC	2 cut(s)	84, 152
BsaJI	CCNNGG	1 cut(s)	60
Bse1I	ACTGG	1 cut(s)	444
BseDI	CCNNGG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	444
BseXI	GCAGC	3 cut(s)	91, 113, 419
BslFI	GGGAC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	418
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	1 cut(s)	422
BspCNI	CTCAG	1 cut(s)	105
BspOI	GCTAGC	2 cut(s)	84, 152
BsrI	ACTGG	1 cut(s)	444
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	180
Bst6I	CTCTTC	2 cut(s)	9, 171
BstAPI	GCANNNNNTGC	2 cut(s)	404, 413
BstC8I	GCNNGC	2 cut(s)	82, 150
BstDEI	CTNAG	3 cut(s)	113, 272, 291
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 77, 404, 413
BstNSI	RCATGY	1 cut(s)	311
BstV1I	GCAGC	3 cut(s)	91, 113, 419
Cac8I	GCNNGC	2 cut(s)	82, 150
Cfr13I	GGNCC	1 cut(s)	442
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	3 cut(s)	8, 196, 308
CviJI	RGCY	5 cut(s)	80, 104, 152, 290, 493
CviKI_1	RGCY	5 cut(s)	80, 104, 152, 290, 493
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	3 cut(s)	113, 272, 291
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eam1104I	CTCTTC	2 cut(s)	9, 171
EarI	CTCTTC	2 cut(s)	9, 171
Eco47I	GGWCC	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	73
FaeI	CATG	3 cut(s)	11, 199, 311
FaiI	YATR	7 cut(s)	9, 197, 251, 261, 283, 309, 324
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	3 cut(s)	7, 195, 307
Fnu4HI	GCNGC	3 cut(s)	102, 105, 408
Fsp4HI	GCNGC	3 cut(s)	102, 105, 408
FspBI	CTAG	3 cut(s)	81, 149, 240
GluI	GCNGC	3 cut(s)	102, 105, 408
Hin1II	CATG	3 cut(s)	11, 199, 311
HinfI	GANTC	2 cut(s)	4, 369
HphI	GGTGA	3 cut(s)	355, 364, 383
Hpy188I	TCNGA	3 cut(s)	25, 114, 193
Hpy188III	TCNNGA	1 cut(s)	473
HpyAV	CCTTC	1 cut(s)	461
HpyCH4V	TGCA	7 cut(s)	32, 71, 101, 253, 398, 407, 416
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 77, 404, 413
HpyF3I	CTNAG	3 cut(s)	113, 272, 291
Hsp92II	CATG	3 cut(s)	11, 199, 311
Kzo9I	GATC	1 cut(s)	180
LpnPI	CCDG	4 cut(s)	70, 379, 408, 425
Lsp1109I	GCAGC	3 cut(s)	91, 113, 419
LweI	GCATC	2 cut(s)	29, 58
MaeI	CTAG	3 cut(s)	81, 149, 240
MaeIII	GTNAC	3 cut(s)	262, 328, 448
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	5 cut(s)	26, 77, 188, 311, 365
MluCI	AATT	4 cut(s)	26, 131, 213, 335
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	4 cut(s)	10, 55, 108, 132
Mph1103I	ATGCAT	1 cut(s)	73
MseI	TTAA	2 cut(s)	50, 461
MslI	CAYNNNNRTG	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	104
Mva1269I	GAATGC	1 cut(s)	418
MwoI	GCNNNNNNNGC	4 cut(s)	17, 77, 404, 413
NdeII	GATC	1 cut(s)	180
NheI	GCTAGC	2 cut(s)	80, 148
NlaIII	CATG	3 cut(s)	11, 199, 311
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	262
NsiI	ATGCAT	1 cut(s)	73
NspI	RCATGY	1 cut(s)	311
PctI	GAATGC	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	369
PkrI	GCNGC	3 cut(s)	103, 106, 409
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	442
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	2 cut(s)	50, 461
SatI	GCNGC	3 cut(s)	102, 105, 408
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	442
ScaI	AGTACT	1 cut(s)	244
SchI	GAGTC	1 cut(s)	13
SetI	ASST	7 cut(s)	82, 106, 154, 282, 292, 405, 472
SfaNI	GCATC	2 cut(s)	29, 58
SinI	GGWCC	1 cut(s)	442
SmiMI	CAYNNNNRTG	1 cut(s)	348
SpeI	ACTAGT	1 cut(s)	239
Sse9I	AATT	4 cut(s)	26, 131, 213, 335
SsiI	CCGC	1 cut(s)	422
SspI	AATATT	1 cut(s)	458
SspMI	CTAG	3 cut(s)	81, 149, 240
TaqI	TCGA	1 cut(s)	183
TasI	AATT	4 cut(s)	26, 131, 213, 335
TatI	WGTACW	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	369
Tru1I	TTAA	2 cut(s)	50, 461
Tru9I	TTAA	2 cut(s)	50, 461
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	3 cut(s)	101, 104, 407
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	366, 375
VpaK11BI	GGWCC	1 cut(s)	442
XapI	RAATTY	3 cut(s)	26, 213, 335
XceI	RCATGY	1 cut(s)	311
XspI	CTAG	3 cut(s)	81, 149, 240
ZrmI	AGTACT	1 cut(s)	244
Zsp2I	ATGCAT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.