RchiOBHm_Chr1g0375661

Exocyst complex component Sec10

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006252
Physical Location & Seq
Reverse (-)
63005540 .. 63005842
303 bp
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UTR
Exon/CDS
Intron
PRQ59936

Sequence Viewer

Length: 303 bp
ATGAGTCATGTTGAAGAGGCATCTGAATTTGCAAACAAGTTGATGGCATTAACATTTGCCGAGGAAGATGCATTTGTAGCTAGCAGGGGATTAGAAGTTGCAGCTGCTAATCTGAGGGACTACTGCTACAAATTGGAGAGGAAACTGCTAGCTCGTTTTGAAGTGCATCACAGAGAAGAGATCGACTTGTCTGACGTGGCAGAATGTGCTAAAATTTTATCCAAACTCAACAAGGGAACTAGTACTATTATGCAACATTATGTGGTAAAACTTCAATATTTGTTCATGACATGGAAGTCATGA

Protein Analysis

100

Amino Acids

11.53

Weight (kDa)

6.06

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec10_HB PF07393 9 - 93 1.1e-11 Exocyst complex component Sec10-like, alpha-helical bundle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 295
AcsI RAATTY 2 cut(s) 26, 213
AfaI GTAC 1 cut(s) 244
AgsI TTSAA 3 cut(s) 14, 161, 275
AhlI ACTAGT 1 cut(s) 239
AjiI CACGTC 1 cut(s) 196
AluBI AGCT 3 cut(s) 80, 104, 152
AluI AGCT 3 cut(s) 80, 104, 152
ApeKI GCWGC 2 cut(s) 101, 104
ApoI RAATTY 2 cut(s) 26, 213
AsuNHI GCTAGC 2 cut(s) 80, 148
BbvI GCAGC 2 cut(s) 91, 113
BccI CCATC 1 cut(s) 37
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BcuI ACTAGT 1 cut(s) 239
BfaI CTAG 3 cut(s) 81, 149, 240
BisI GCNGC 2 cut(s) 102, 105
BlsI GCNGC 2 cut(s) 103, 106
BmcAI AGTACT 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 196
BmsI GCATC 3 cut(s) 29, 58, 175
BmtI GCTAGC 2 cut(s) 84, 152
BsaJI CCNNGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 104
BseXI GCAGC 2 cut(s) 91, 113
BslFI GGGAC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 105
BspHI TCATGA 2 cut(s) 285, 299
BspOI GCTAGC 2 cut(s) 84, 152
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 180
Bst6I CTCTTC 2 cut(s) 9, 171
BstAPI GCANNNNNTGC 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 82, 150
BstDEI CTNAG 1 cut(s) 113
BstKTI GATC 1 cut(s) 183
BstMBI GATC 1 cut(s) 180
BstMWI GCNNNNNNNGC 2 cut(s) 77, 206
BstV1I GCAGC 2 cut(s) 91, 113
BtrI CACGTC 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 82, 150
CciI TCATGA 2 cut(s) 285, 299
Csp6I GTAC 1 cut(s) 243
CviAII CATG 4 cut(s) 8, 286, 291, 300
CviJI RGCY 3 cut(s) 80, 104, 152
CviKI_1 RGCY 3 cut(s) 80, 104, 152
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 1 cut(s) 113
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
DrdI GACNNNNNNGTC 1 cut(s) 295
DseDI GACNNNNNNGTC 1 cut(s) 295
Eam1104I CTCTTC 2 cut(s) 9, 171
EarI CTCTTC 2 cut(s) 9, 171
EcoT22I ATGCAT 1 cut(s) 73
FaeI CATG 4 cut(s) 11, 289, 294, 303
FaiI YATR 6 cut(s) 9, 251, 261, 287, 292, 301
FaqI GGGAC 1 cut(s) 131
FatI CATG 4 cut(s) 7, 285, 290, 299
Fnu4HI GCNGC 2 cut(s) 102, 105
Fsp4HI GCNGC 2 cut(s) 102, 105
FspBI CTAG 3 cut(s) 81, 149, 240
GluI GCNGC 2 cut(s) 102, 105
Hin1II CATG 4 cut(s) 11, 289, 294, 303
HinfI GANTC 1 cut(s) 4
Hpy188I TCNGA 3 cut(s) 25, 114, 193
Hpy188III TCNNGA 2 cut(s) 286, 300
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 5 cut(s) 32, 71, 101, 166, 253
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 206
HpyF3I CTNAG 1 cut(s) 113
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 4 cut(s) 11, 289, 294, 303
Kzo9I GATC 1 cut(s) 180
LpnPI CCDG 1 cut(s) 70
Lsp1109I GCAGC 2 cut(s) 91, 113
LweI GCATC 3 cut(s) 29, 58, 175
MaeI CTAG 3 cut(s) 81, 149, 240
MaeII ACGT 1 cut(s) 195
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 3 cut(s) 26, 77, 188
MluCI AATT 3 cut(s) 26, 131, 213
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 4 cut(s) 10, 55, 108, 132
Mph1103I ATGCAT 1 cut(s) 73
MseI TTAA 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 77, 206
NdeII GATC 1 cut(s) 180
NheI GCTAGC 2 cut(s) 80, 148
NlaIII CATG 4 cut(s) 11, 289, 294, 303
NmeAIII GCCGAG 1 cut(s) 85
NsiI ATGCAT 1 cut(s) 73
PagI TCATGA 2 cut(s) 285, 299
PkrI GCNGC 2 cut(s) 103, 106
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 2 cut(s) 102, 105
Sau3AI GATC 1 cut(s) 180
ScaI AGTACT 1 cut(s) 244
SchI GAGTC 1 cut(s) 13
SetI ASST 4 cut(s) 82, 106, 154, 198
SfaNI GCATC 3 cut(s) 29, 58, 175
SpeI ACTAGT 1 cut(s) 239
Sse9I AATT 3 cut(s) 26, 131, 213
SspI AATATT 1 cut(s) 278
SspMI CTAG 3 cut(s) 81, 149, 240
TaiI ACGT 1 cut(s) 198
TaqI TCGA 1 cut(s) 183
TasI AATT 3 cut(s) 26, 131, 213
TatI WGTACW 1 cut(s) 242
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TseI GCWGC 2 cut(s) 101, 104
TspDTI ATGAA 1 cut(s) 274
XapI RAATTY 2 cut(s) 26, 213
XspI CTAG 3 cut(s) 81, 149, 240
ZrmI AGTACT 1 cut(s) 244
Zsp2I ATGCAT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.