Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0006252

Physical Location & Seq

Genomic Coordinates Reverse (-)

48361747 .. 48371243

Gene Structure 9497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG266700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

ATGCATCTGACTTGGATATTGAATTACAAATTTGACTGTATTAGATTACATGTTATTTGTCAGCTTGAAAAAGGAGTAGACGGCTTGTTTGGTAGCTTTGCCAGGTTGGATTCACGTATATCAAGTGTTGGACAGACTGCTGCAAAAATAGGAGATCATCTGCAGAGTGCAGATGCTCAGCGGGAAACTGCTAGTCAATCAATAGAGCTCATAAAGTACTTGATGGAGTTTAATAGCAGCCCGGGCGATCTAATGGAACTTTCACCTCTATTTTCCGATGACAGTCGTGTTGCAGAGGCTGCTAAAATTGCACAAAAACTGCGGGCATTTGCTGAGGAAGATATTGGAAGAACTGTACCATCGGTCATGGGCAATGCAGCCGCTAGCAGAGGATTAGAAGTTGCAGTTGCTAATCTTCAGGAGTACTGTAACGAATTGGAGAACAGACTGCTAGCTCGATTTGATGCCGCATCACAGAGAAGAGATTTGTCTACCATGGCAGAATGTGCTAAAATTTTATCTCAGTTTAACAGGGGAACTAGTGCCATGCAACATTATGTGGCAACACGTCCAATGTTTATTGACGTGGAAGTCATGAATGCAGATACCAGATTGGTTCTTGGTGACGAAGGTTCCCAGGCTAGTCCTAGCAATGTTTCTCGTGGACTTTCTTCCTTGTACAAAGAAAACACAGATACTGTACGGAAGGAAGCAGCAACAATTATGGCTGTATTCCCTTCTCCTAATGAAGTTATGTCAATCTTAGTTCAGCGAGTTTTAGAGCAGAGAATTACAGCTTTATTGGACAAATTATTGGTAAAACCATCTCTCGTGAACCTACCTCCTATGGAAGAAGGGGGCCTTCTATTATATCTTAGAATGCTAGCGGTGGCATATGAGAAGACGCAAGATCTTGCTAAGGACCTGCGAGCCGTGGGATGTGGTGACTTGGATGTCGAGGGCCTCACAGAGTCTTTGTTTTCTGCTCACAAGGATGGATATCCTGAACATGAGCAGGCCTCTCTTAAACAACTATATCAAGCTAAGATGGCAGAACTACGTGCTGAAAGCCAGCAGGCATCTGAATCAAGTGGAACAATCGGGCGCTCAAAAGGGGCAGCAGTAGCATCTTCCAACCAGCAAATATCCGTCACTGTTGTGACAGAGTTTGTTCGTTGGAATGAAGAAGCAATTACCAGATGCACTCTGTTCTCATCCCAACCTGCAACCCTTGCAGCAAATGTAAAATCGGTGTTCACTTCCCTCCTAGGCCAAGTCAGTAAATATATAACAGAAGGTCTTGAACGAGCAAGAGACAGCTTGACTGAAGCTGCATCTTTAAGGGAAAGATTTGTATTGGGTACTAGTATGAGTAGAAGGGTGGCTGCTGCAGCTGCTTCTGCTGCAGAAGCTGCTGCTGCTGCTGGTGAAAGCAGTTTCAGATCTTTCATGGTTGCTGTACAACGTTGTGGTAGTAGTGTGGCTATAGTTCAGCAATATTTTTCAAATTCTATCTCTCGGCTTCTACTCCCTGTTGATGGAGCGCATGCTGCTTCATGTGAAGAAATGGCAACAGCTATGTCAAGTGCGGAGGGTGCTGCATATAAAGGGCTTCAACAATGTATTGAAACTGTGATGGCTGAGGTGGAGCGGTTACTTTCTTCTGAACAGAAGGCAACAGATTACAGATCACCAGAAGATGGATTTACTCCTGATCATCGGCCGACAAATGCCTGCACGAGAGTTGTAGCTTATCTTTCCCGTATACTAGAATCTGCATTCTCAGCACTTGAGGGTCTTAACAAGCAAGCATTTTTGACTGAATTAGGAAATCGCTTGCATAAAGGGCTACTAACACATTGGCAGAAGTTCACTTTCAATCCCAGTGGAGGATTACGGCTGAAGCGTGACATAACTGAATATGGAGAATTTGTGCGCAGTTTTAATGCTCCTTCTGTTGATGAAAAATTTGAATTGCTTGGCATAATGGCCAATGTCTTTATTGTTGCTCCTGAAAGTCTCTCAACTCTGTTTGAGGGTACCCCCAGTATACGGAAAGATGCACAGAGGTTTATTGAGCTTAGAGATGACTACAAGAGTGCAAAACTTGCTTCCAGACTTAGTTCCTTGTGGGCAAGCTCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005938 GO:0006810 GO:0006887 GO:0006892 GO:0006893 GO:0008150 GO:0009987 GO:0016192 GO:0031982 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0046903 GO:0048193 GO:0051179 GO:0051234 GO:0070062 GO:0071944 GO:0098876 GO:0099023 GO:0099568 GO:1903561

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec10

Protein Analysis

715

Amino Acids

78.13

Weight (kDa)

5.64

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec10_N	PF20667	20 - 93	1.5e-18	Exocyst complex component Sec10, N-terminal
Sec10_HB	PF07393	99 - 705	1.8e-152	Exocyst complex component Sec10-like, alpha-helical bundle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12370 AT5G12370 AT5G12370
fragaria_vesca	FvH4_7g15330 FvH4_7g15330 FvH4_7g15330 FvH4_7g15330
malus_domestica	MD01G1071200.v1.1 MD07G1131500.v1.1
prunus_persica	Prupe.2G177200_v2.0.a1
pyrus_communis	pycom01g10010 pycom07g12840
rosa_chinensis	RchiOBHm_Chr1g0357661 RchiOBHm_Chr1g0375651 RchiOBHm_Chr1g0375661
rosa_laevigata	RLG00000028010
rosa_multiflora	Rmu_sc0001644.1_g000021 Rmu_sc0004683.1_g000003
rosa_roxburghii	Rroxscaffold_4G00282690 Rroxscaffold_4G00298660
rosa_rugosa	Rorug01G0257500
rosa_samantha	Rh1AG271500 Rh1AG402900 Rh1BG238400 Rh1CG255300 Rh1DG266700
rosa_wichuraiana	Rw1G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	590, 953
Acc16I	TGCGCA	1 cut(s)	1937
Acc36I	ACCTGC	2 cut(s)	933, 1231
Acc65I	GGTACC	1 cut(s)	2039
AccB1I	GGYRCC	1 cut(s)	2039
AccB7I	CCANNNNNTGG	1 cut(s)	1700
AccBSI	CCGCTC	1 cut(s)	1651
AccI	GTMKAC	4 cut(s)	78, 491, 1765, 2050
AciI	CCGC	7 cut(s)	181, 322, 381, 468, 887, 1589, 1651
AclI	AACGTT	1 cut(s)	1465
AcoI	YGGCCR	2 cut(s)	1721, 1989
AcsI	RAATTY	5 cut(s)	29, 513, 1507, 1928, 1967
AcuI	CTGAAG	3 cut(s)	401, 1347, 1922
AfaI	GTAC	8 cut(s)	218, 357, 425, 680, 702, 1363, 1461, 2041
AfiI	CCNNNNNNNGG	4 cut(s)	1538, 1700, 1889, 2052
AflIII	ACRYGT	2 cut(s)	49, 566
AgsI	TTSAA	8 cut(s)	22, 68, 1304, 1506, 1616, 1628, 1879, 1973
AhlI	ACTAGT	2 cut(s)	539, 1364
AjiI	CACGTC	2 cut(s)	569, 586
AjnI	CCWGG	2 cut(s)	101, 636
AleI	CACNNNNGTG	1 cut(s)	1157
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	2 cut(s)	1308, 2024
AlwNI	CAGNNNCTG	3 cut(s)	299, 698, 1412
Ama87I	CYCGRG	1 cut(s)	241
AoxI	GGCC	6 cut(s)	859, 961, 1017, 1270, 1721, 1989
ApoI	RAATTY	5 cut(s)	29, 513, 1507, 1928, 1967
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
Asp718I	GGTACC	1 cut(s)	2039
AspA2I	CCTAGG	1 cut(s)	1267
AspLEI	GCGC	3 cut(s)	1107, 1546, 1938
AspS9I	GGNCC	3 cut(s)	859, 922, 961
AsuC2I	CCSGG	2 cut(s)	242, 243
AsuHPI	GGTGA	5 cut(s)	255, 635, 956, 1439, 1683
AsuNHI	GCTAGC	3 cut(s)	383, 451, 883
AvaI	CYCGRG	1 cut(s)	241
AvaII	GGWCC	1 cut(s)	922
AvrII	CCTAGG	1 cut(s)	1267
BalI	TGGCCA	1 cut(s)	1991
BanI	GGYRCC	1 cut(s)	2039
BanII	GRGCYC	1 cut(s)	210
BauI	CACGAG	3 cut(s)	660, 830, 1738
BbsI	GAAGAC	1 cut(s)	908
Bbv12I	GWGCWC	1 cut(s)	210
BbvCI	CCTCAGC	2 cut(s)	333, 1641
BccI	CCATC	8 cut(s)	217, 367, 832, 989, 1042, 1532, 1630, 1694
BceAI	ACGGC	3 cut(s)	97, 917, 1913
BciT130I	CCWGG	2 cut(s)	103, 638
BclI	TGATCA	1 cut(s)	1714
BcnI	CCSGG	2 cut(s)	242, 243
BcoDI	GTCTC	2 cut(s)	1308, 2024
BcuI	ACTAGT	2 cut(s)	539, 1364
BfmI	CTRYAG	4 cut(s)	161, 1389, 1404, 1485
BfoI	RGCGCY	1 cut(s)	1108
BfuAI	ACCTGC	2 cut(s)	933, 1231
BglII	AGATCT	2 cut(s)	910, 1442
BlnI	CCTAGG	1 cut(s)	1267
BlpI	GCTNAGC	1 cut(s)	177
BmcAI	AGTACT	2 cut(s)	218, 425
Bme1390I	CCNGG	4 cut(s)	103, 242, 243, 638
Bme18I	GGWCC	1 cut(s)	922
BmeT110I	CYCGRG	1 cut(s)	241
BmgBI	CACGTC	2 cut(s)	569, 586
BmgT120I	GGNCC	3 cut(s)	859, 922, 961
BmiI	GGNNCC	3 cut(s)	634, 860, 2041
BmrFI	CCNGG	4 cut(s)	103, 242, 243, 638
BmrI	ACTGGG	2 cut(s)	1878, 2040
BmsI	GCATC	9 cut(s)	13, 163, 454, 479, 1088, 1136, 1190, 1343, 2050
BmtI	GCTAGC	3 cut(s)	387, 455, 887
BmuI	ACTGGG	2 cut(s)	1878, 2040
BpiI	GAAGAC	1 cut(s)	908
BplI	GAGNNNNNCTC	2 cut(s)	1004, 1036
Bpu10I	CCTNAGC	4 cut(s)	333, 918, 1641, 2140
Bpu1102I	GCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	1811
BpuMI	CCSGG	2 cut(s)	242, 243
BsaAI	YACGTR	2 cut(s)	116, 1061
BsaBI	GATNNNNATC	1 cut(s)	999
BsaJI	CCNNGG	5 cut(s)	241, 495, 636, 933, 1267
BsaXI	ACNNNNNCTCC	2 cut(s)	1917, 1947
Bsc4I	CCNNNNNNNGG	4 cut(s)	1538, 1700, 1889, 2052
Bse1I	ACTGG	2 cut(s)	1884, 2046
Bse3DI	GCAATG	2 cut(s)	379, 658
Bse8I	GATNNNNATC	1 cut(s)	999
BseBI	CCWGG	2 cut(s)	103, 638
BseDI	CCNNGG	5 cut(s)	241, 495, 636, 933, 1267
BseGI	GGATG	4 cut(s)	944, 958, 1000, 1214
BseJI	GATNNNNATC	1 cut(s)	999
BseLI	CCNNNNNNNGG	4 cut(s)	1538, 1700, 1889, 2052
BseMI	GCAATG	2 cut(s)	379, 658
BseMII	CTCAG	5 cut(s)	191, 324, 536, 1632, 1797
BseNI	ACTGG	2 cut(s)	1884, 2046
BseX3I	CGGCCG	1 cut(s)	1721
BsgI	GTGCAG	2 cut(s)	189, 1720
Bsh1285I	CGRYCG	1 cut(s)	1724
BshFI	GGCC	6 cut(s)	861, 963, 1019, 1272, 1723, 1991
BshNI	GGYRCC	1 cut(s)	2039
BsiEI	CGRYCG	1 cut(s)	1724
BsiHKAI	GWGCWC	1 cut(s)	210
BsiHKCI	CYCGRG	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	242
BslI	CCNNNNNNNGG	4 cut(s)	1538, 1700, 1889, 2052
BsmAI	GTCTC	2 cut(s)	1308, 2024
BsmI	GAATGC	3 cut(s)	604, 885, 1778
BsnI	GGCC	6 cut(s)	861, 963, 1019, 1272, 1723, 1991
BsoBI	CYCGRG	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp1407I	TGTACA	2 cut(s)	678, 1459
Bsp143I	GATC	6 cut(s)	154, 247, 910, 1442, 1688, 1714
Bsp1720I	GCTNAGC	1 cut(s)	177
Bsp19I	CCATGG	1 cut(s)	495
BspACI	CCGC	7 cut(s)	181, 322, 381, 468, 887, 1589, 1651
BspANI	GGCC	6 cut(s)	861, 963, 1019, 1272, 1723, 1991
BspCNI	CTCAG	5 cut(s)	190, 325, 535, 1633, 1796
BspHI	TCATGA	1 cut(s)	594
BspLI	GGNNCC	3 cut(s)	634, 860, 2041
BspMAI	CTGCAG	3 cut(s)	165, 1393, 1408
BspMI	ACCTGC	2 cut(s)	933, 1231
BspOI	GCTAGC	3 cut(s)	387, 455, 887
BspT107I	GGYRCC	1 cut(s)	2039
BsrBI	CCGCTC	1 cut(s)	1651
BsrDI	GCAATG	2 cut(s)	379, 658
BsrGI	TGTACA	2 cut(s)	678, 1459
BsrI	ACTGG	2 cut(s)	1884, 2046
BssECI	CCNNGG	5 cut(s)	241, 495, 636, 933, 1267
BssMI	GATC	6 cut(s)	154, 247, 910, 1442, 1688, 1714
BssNAI	GTATAC	2 cut(s)	1766, 2051
BssSI	CACGAG	3 cut(s)	660, 830, 1738
BssT1I	CCWWGG	2 cut(s)	495, 1267
Bst1107I	GTATAC	2 cut(s)	1766, 2051
Bst2BI	CACGAG	3 cut(s)	660, 830, 1738
Bst2UI	CCWGG	2 cut(s)	103, 638
Bst4CI	ACNGT	7 cut(s)	38, 284, 355, 428, 700, 1156, 1633
Bst6I	CTCTTC	1 cut(s)	475
BstAPI	GCANNNNNTGC	5 cut(s)	299, 506, 1232, 1412, 2108
BstAUI	TGTACA	2 cut(s)	678, 1459
BstBAI	YACGTR	2 cut(s)	116, 1061
BstDSI	CCRYGG	2 cut(s)	495, 933
BstF5I	GGATG	4 cut(s)	944, 958, 1000, 1214
BstH2I	RGCGCY	1 cut(s)	1108
BstHHI	GCGC	3 cut(s)	1107, 1546, 1938
BstKTI	GATC	6 cut(s)	157, 250, 913, 1445, 1691, 1717
BstMAI	GTCTC	2 cut(s)	1308, 2024
BstMBI	GATC	6 cut(s)	154, 247, 910, 1442, 1688, 1714
BstMCI	CGRYCG	1 cut(s)	1724
BstNI	CCWGG	2 cut(s)	103, 638
BstNSI	RCATGY	2 cut(s)	53, 1550
BstSCI	CCNGG	4 cut(s)	101, 240, 241, 636
BstSFI	CTRYAG	4 cut(s)	161, 1389, 1404, 1485
BstV2I	GAAGAC	1 cut(s)	908
BstX2I	RGATCY	2 cut(s)	910, 1442
BstYI	RGATCY	2 cut(s)	910, 1442
BstZ17I	GTATAC	2 cut(s)	1766, 2051
BstZI	CGGCCG	1 cut(s)	1721
BsuRI	GGCC	6 cut(s)	861, 963, 1019, 1272, 1723, 1991
BtgI	CCRYGG	2 cut(s)	495, 933
BtrI	CACGTC	2 cut(s)	569, 586
BtsCI	GGATG	4 cut(s)	944, 958, 1000, 1214
BtsIMutI	CAGTG	2 cut(s)	1152, 1891
BveI	ACCTGC	2 cut(s)	933, 1231
CaiI	CAGNNNCTG	3 cut(s)	299, 698, 1412
CciI	TCATGA	1 cut(s)	594
CfoI	GCGC	3 cut(s)	1107, 1546, 1938
Cfr13I	GGNCC	3 cut(s)	859, 922, 961
Cfr9I	CCCGGG	1 cut(s)	241
CseI	GACGC	1 cut(s)	913
Csp6I	GTAC	8 cut(s)	217, 356, 424, 679, 701, 1362, 1460, 2040
CspCI	CAANNNNNGTGG	2 cut(s)	1867, 1902
CviAII	CATG	9 cut(s)	50, 367, 496, 547, 595, 1010, 1450, 1547, 1557
CviQI	GTAC	8 cut(s)	217, 356, 424, 679, 701, 1362, 1460, 2040
DpnI	GATC	6 cut(s)	156, 249, 912, 1444, 1690, 1716
DpnII	GATC	6 cut(s)	154, 247, 910, 1442, 1688, 1714
DrdI	GACNNNNNNGTC	2 cut(s)	590, 953
DseDI	GACNNNNNNGTC	2 cut(s)	590, 953
EaeI	YGGCCR	2 cut(s)	1721, 1989
EagI	CGGCCG	1 cut(s)	1721
Eam1104I	CTCTTC	1 cut(s)	475
EarI	CTCTTC	1 cut(s)	475
Ecl136II	GAGCTC	1 cut(s)	208
EclXI	CGGCCG	1 cut(s)	1721
Eco130I	CCWWGG	2 cut(s)	495, 1267
Eco147I	AGGCCT	1 cut(s)	1019
Eco24I	GRGCYC	1 cut(s)	210
Eco32I	GATATC	1 cut(s)	1001
Eco47I	GGWCC	1 cut(s)	922
Eco52I	CGGCCG	1 cut(s)	1721
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	3 cut(s)	401, 1347, 1922
Eco88I	CYCGRG	1 cut(s)	241
EcoICRI	GAGCTC	1 cut(s)	208
EcoO109I	RGGNCCY	3 cut(s)	859, 922, 961
EcoRII	CCWGG	2 cut(s)	101, 636
EcoRV	GATATC	1 cut(s)	1001
EcoT14I	CCWWGG	2 cut(s)	495, 1267
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	2 cut(s)	495, 1267
FaeI	CATG	9 cut(s)	53, 370, 499, 550, 598, 1013, 1453, 1550, 1560
FalI	AAGNNNNNCTT	2 cut(s)	846, 878
FatI	CATG	9 cut(s)	49, 366, 495, 546, 594, 1009, 1449, 1546, 1556
FauI	CCCGC	2 cut(s)	174, 315
FauNDI	CATATG	1 cut(s)	895
FbaI	TGATCA	1 cut(s)	1714
FblI	GTMKAC	4 cut(s)	78, 491, 1765, 2050
FokI	GGATG	4 cut(s)	951, 965, 1007, 1201
FriOI	GRGCYC	1 cut(s)	210
FspI	TGCGCA	1 cut(s)	1937
GlaI	GCGC	3 cut(s)	1106, 1545, 1937
HaeII	RGCGCY	1 cut(s)	1108
HaeIII	GGCC	6 cut(s)	861, 963, 1019, 1272, 1723, 1991
HapII	CCGG	1 cut(s)	242
HgaI	GACGC	1 cut(s)	913
HhaI	GCGC	3 cut(s)	1107, 1546, 1938
Hin1II	CATG	9 cut(s)	53, 370, 499, 550, 598, 1013, 1453, 1550, 1560
Hin6I	GCGC	3 cut(s)	1105, 1544, 1936
HinP1I	GCGC	3 cut(s)	1105, 1544, 1936
HinfI	GANTC	4 cut(s)	110, 971, 1085, 1772
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	5 cut(s)	255, 635, 956, 1439, 1683
Hpy166II	GTNNAC	8 cut(s)	79, 492, 665, 835, 1257, 1766, 1872, 2051
Hpy188I	TCNGA	5 cut(s)	9, 277, 1084, 1442, 1666
Hpy188III	TCNNGA	8 cut(s)	419, 595, 832, 1004, 1301, 1712, 2012, 2115
Hpy8I	GTNNAC	8 cut(s)	79, 492, 665, 835, 1257, 1766, 1872, 2051
HpyAV	CCTTC	9 cut(s)	623, 700, 747, 848, 872, 1289, 1371, 1666, 1962
HpyCH4III	ACNGT	7 cut(s)	38, 284, 355, 428, 700, 1156, 1633
HpyCH4IV	ACGT	5 cut(s)	115, 568, 585, 1060, 1465
HpySE526I	ACGT	5 cut(s)	115, 568, 585, 1060, 1465
Hsp92II	CATG	9 cut(s)	53, 370, 499, 550, 598, 1013, 1453, 1550, 1560
HspAI	GCGC	3 cut(s)	1105, 1544, 1936
KpnI	GGTACC	1 cut(s)	2043
Ksp22I	TGATCA	1 cut(s)	1714
Kzo9I	GATC	6 cut(s)	154, 247, 910, 1442, 1688, 1714
LmnI	GCTCC	4 cut(s)	1541, 1648, 1954, 2014
LweI	GCATC	9 cut(s)	13, 163, 454, 479, 1088, 1136, 1190, 1343, 2050
MaeII	ACGT	5 cut(s)	115, 568, 585, 1060, 1465
MaeIII	GTNAC	7 cut(s)	428, 623, 944, 1150, 1159, 1653, 1907
MalI	GATC	6 cut(s)	156, 249, 912, 1444, 1690, 1716
MbiI	CCGCTC	1 cut(s)	1651
MboI	GATC	6 cut(s)	154, 247, 910, 1442, 1688, 1714
MflI	RGATCY	2 cut(s)	910, 1442
MhlI	GDGCHC	1 cut(s)	210
MlsI	TGGCCA	1 cut(s)	1991
MluNI	TGGCCA	1 cut(s)	1991
MlyI	GAGTC	1 cut(s)	980
MmeI	TCCRAC	4 cut(s)	87, 109, 1157, 1158
Mox20I	TGGCCA	1 cut(s)	1991
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	1991
MseI	TTAA	6 cut(s)	231, 528, 1026, 1340, 1800, 1944
MslI	CAYNNNNRTG	2 cut(s)	993, 1157
Msp20I	TGGCCA	1 cut(s)	1991
MspA1I	CMGCKG	2 cut(s)	181, 1394
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	4 cut(s)	103, 242, 243, 638
Mva1269I	GAATGC	3 cut(s)	604, 885, 1778
MvaI	CCWGG	2 cut(s)	103, 638
NciI	CCSGG	2 cut(s)	242, 243
NcoI	CCATGG	1 cut(s)	495
NdeI	CATATG	1 cut(s)	895
NdeII	GATC	6 cut(s)	154, 247, 910, 1442, 1688, 1714
NheI	GCTAGC	3 cut(s)	383, 451, 883
NlaIII	CATG	9 cut(s)	53, 370, 499, 550, 598, 1013, 1453, 1550, 1560
NlaIV	GGNNCC	3 cut(s)	634, 860, 2041
NmeAIII	GCCGAG	1 cut(s)	1498
NmuCI	GTSAC	5 cut(s)	623, 944, 1150, 1159, 1907
NsbI	TGCGCA	1 cut(s)	1937
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	53, 1550
OliI	CACNNNNGTG	1 cut(s)	1157
PaeI	GCATGC	1 cut(s)	1550
PagI	TCATGA	1 cut(s)	594
PceI	AGGCCT	1 cut(s)	1019
PciI	ACATGT	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	1 cut(s)	1903
PctI	GAATGC	3 cut(s)	604, 885, 1778
PfeI	GAWTC	3 cut(s)	110, 1085, 1772
PflMI	CCANNNNNTGG	1 cut(s)	1700
PleI	GAGTC	1 cut(s)	979
PpsI	GAGTC	1 cut(s)	979
Ppu21I	YACGTR	2 cut(s)	116, 1061
PpuMI	RGGWCCY	1 cut(s)	922
PscI	ACATGT	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	210
Psp1406I	AACGTT	1 cut(s)	1465
Psp5II	RGGWCCY	1 cut(s)	922
Psp6I	CCWGG	2 cut(s)	101, 636
PspGI	CCWGG	2 cut(s)	101, 636
PspN4I	GGNNCC	3 cut(s)	634, 860, 2041
PspPI	GGNCC	3 cut(s)	859, 922, 961
PspPPI	RGGWCCY	1 cut(s)	922
PstI	CTGCAG	3 cut(s)	165, 1393, 1408
PstNI	CAGNNNCTG	3 cut(s)	299, 698, 1412
PsuI	RGATCY	2 cut(s)	910, 1442
PvuII	CAGCTG	1 cut(s)	1394
RsaI	GTAC	8 cut(s)	218, 357, 425, 680, 702, 1363, 1461, 2041
RsaNI	GTAC	8 cut(s)	217, 356, 424, 679, 701, 1362, 1460, 2040
RseI	CAYNNNNRTG	2 cut(s)	993, 1157
SacI	GAGCTC	1 cut(s)	210
SaqAI	TTAA	6 cut(s)	231, 528, 1026, 1340, 1800, 1944
Sau3AI	GATC	6 cut(s)	154, 247, 910, 1442, 1688, 1714
Sau96I	GGNCC	3 cut(s)	859, 922, 961
ScaI	AGTACT	2 cut(s)	218, 425
SchI	GAGTC	1 cut(s)	980
ScrFI	CCNGG	4 cut(s)	103, 242, 243, 638
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	9 cut(s)	13, 163, 454, 479, 1088, 1136, 1190, 1343, 2050
SfcI	CTRYAG	4 cut(s)	161, 1389, 1404, 1485
SinI	GGWCC	1 cut(s)	922
SmaI	CCCGGG	1 cut(s)	243
SmiMI	CAYNNNNRTG	2 cut(s)	993, 1157
SmlI	CTYRAG	1 cut(s)	1790
SmoI	CTYRAG	1 cut(s)	1790
SpeI	ACTAGT	2 cut(s)	539, 1364
SphI	GCATGC	1 cut(s)	1550
SrfI	GCCCGGGC	1 cut(s)	243
SseBI	AGGCCT	1 cut(s)	1019
SsiI	CCGC	7 cut(s)	181, 322, 381, 468, 887, 1589, 1651
SspI	AATATT	1 cut(s)	1499
SstI	GAGCTC	1 cut(s)	210
StuI	AGGCCT	1 cut(s)	1019
StyD4I	CCNGG	4 cut(s)	101, 240, 241, 636
StyI	CCWWGG	2 cut(s)	495, 1267
TaaI	ACNGT	7 cut(s)	38, 284, 355, 428, 700, 1156, 1633
TaiI	ACGT	5 cut(s)	118, 571, 588, 1063, 1468
TaqI	TCGA	2 cut(s)	457, 957
TaqII	GACCGA	1 cut(s)	352
TatI	WGTACW	4 cut(s)	216, 423, 678, 1459
TauI	GCSGC	2 cut(s)	383, 470
TfiI	GAWTC	3 cut(s)	110, 1085, 1772
Tru1I	TTAA	6 cut(s)	231, 528, 1026, 1340, 1800, 1944
Tru9I	TTAA	6 cut(s)	231, 528, 1026, 1340, 1800, 1944
TscAI	CASTG	2 cut(s)	1159, 1891
TseFI	GTSAC	5 cut(s)	623, 944, 1150, 1159, 1907
Tsp45I	GTSAC	5 cut(s)	623, 944, 1150, 1159, 1907
TspDTI	ATGAA	6 cut(s)	611, 762, 1197, 1438, 1545, 1977
TspGWI	ACGGA	3 cut(s)	718, 1138, 2068
TspMI	CCCGGG	1 cut(s)	241
TspRI	CASTG	2 cut(s)	1159, 1891
Van91I	CCANNNNNTGG	1 cut(s)	1700
VpaK11BI	GGWCC	1 cut(s)	922
XapI	RAATTY	5 cut(s)	29, 513, 1507, 1928, 1967
XceI	RCATGY	2 cut(s)	53, 1550
XmaI	CCCGGG	1 cut(s)	241
XmaJI	CCTAGG	1 cut(s)	1267
XmiI	GTMKAC	4 cut(s)	78, 491, 1765, 2050
ZrmI	AGTACT	2 cut(s)	218, 425
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.