pycom01g11600
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0007535
Physical Location & Seq
Reverse (-)
12631608 .. 12633351
1744 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11600.1

Sequence Viewer

Length: 1089 bp
ATGAAAAGTCACAACTCTCAAGCCTGCCTCTTCCTCCCTGTCATCGATGTCCTCAAGTTCGAGCCTTGGGAATTGCCTGAGCGCATGTTCCCTGAATCTCCTTATCAAGCAAAGGCGTGGTACTCCTTCAGCTGGTGTGATTACAAATCCAACAATAGTCCTCGCTTCAAAAGGAAAACAAAGCAAGGCTTCTGGAAGATGAACGGCGATCAACGGGATGTCGGCCCGAAATATTTCACTTGCAAAAAGAGGACATTAACCTTCCAAAAAAAGACCTTCCAGGAAGGTCGTAGGTCTAAATCCGTTACGACCAGCTGGAAAATGCACGAGTACATTTGCATTAAGCCTAAACGGGGTTCTAGTCCCCATCAGGCGAGGGATCAGCAAAGGGGCTTTGTTCTCTGCGTCCTCAAGTATAAACCAGCTGATTCTAAGTCTAATAAGAAGAAGCTTAAGGCTACTTTGATCCCTGGTGAATTAGCCGATGGTACTGGTAACCGTGGCTACATTGCCTCTAGGTCCGGAGATGATGAAGCTGCTGCTGCTGCTGCAACGAATCATATGTCTCCAAACACTGAAGAAGTTCTGGCATACAAACAGCTAGAACATGATCTGCTTGGTAGTGGAAATCAAGATGATGGTGAACCTGGTGGTGGCAGCTCATCTGATTTTAATCAATCTCTACGCGACATGATTCAAGAGTTTTGGTGGCAGTTATGTCCCCCAGCAGGTGAATATCTGAATTCACACTTTCCTCTTCCTGAGCCACCTCAGCCTCATCTCCCACCACAGCTTGGAAATGCTCCTGAAGTCTGCAGTGGCGAATTGGTTGATCCTGGTACCAGTGGCTGCACTACCTATAATACCGATAACCAAGCTGCGACAATGAATCATATGGTTTCCAACACAGAAGAAATTTTGGCATTCAAACAGCTAGAGCGTGATGTGTTTGCCGGTGGTAATCACGATGGTGGTGAACCTGGTAGTGGTATTTTGACCTTTGGTGATGGTAATGATGAAACTGGTGGCTGGAAATTCTCGGATTTCGATGATCGAGCTGCATCTGATATGTTTCAAGAGGTGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

363

Amino Acids

40.46

Weight (kDa)

6.03

Isoelectric Point (pI)

49.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 111 3e-16 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 719
Acc36I ACCTGC 1 cut(s) 719
Acc65I GGTACC 1 cut(s) 839
AccB1I GGYRCC 1 cut(s) 839
AccB7I CCANNNNNTGG 1 cut(s) 794
AccII CGCG 1 cut(s) 687
AccIII TCCGGA 1 cut(s) 521
AclWI GGATC 3 cut(s) 387, 460, 827
AcsI RAATTY 3 cut(s) 742, 915, 1034
AcuI CTGAAG 3 cut(s) 112, 597, 828
AfaI GTAC 4 cut(s) 122, 332, 490, 841
AfiI CCNNNNNNNGG 6 cut(s) 132, 353, 653, 728, 794, 986
AflII CTTAAG 1 cut(s) 452
AgsI TTSAA 4 cut(s) 169, 698, 928, 1076
AjnI CCWGG 5 cut(s) 279, 469, 646, 835, 979
AleI CACNNNNGTG 1 cut(s) 969
Alw26I GTCTC 1 cut(s) 570
AlwI GGATC 3 cut(s) 387, 460, 827
AlwNI CAGNNNCTG 1 cut(s) 849
Aor13HI TCCGGA 1 cut(s) 521
AoxI GGCC 1 cut(s) 223
ApeKI GCWGC 9 cut(s) 536, 539, 542, 545, 548, 657, 849, 878, 1058
ApoI RAATTY 3 cut(s) 742, 915, 1034
ArsI GACNNNNNNTTYG 2 cut(s) 548, 580
Asp700I GAANNNNTTC 2 cut(s) 233, 582
Asp718I GGTACC 1 cut(s) 839
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 2 cut(s) 224, 519
AsuHPI GGTGA 5 cut(s) 485, 653, 743, 986, 1016
AvaII GGWCC 1 cut(s) 519
BanI GGYRCC 1 cut(s) 839
BauI CACGAG 1 cut(s) 326
BbvCI CCTCAGC 1 cut(s) 771
BbvI GCAGC 9 cut(s) 523, 526, 529, 532, 535, 669, 836, 865, 1045
BccI CCATC 5 cut(s) 375, 479, 632, 962, 1001
BceAI ACGGC 1 cut(s) 220
BciT130I CCWGG 5 cut(s) 281, 471, 648, 837, 981
BcoDI GTCTC 1 cut(s) 570
BfaI CTAG 4 cut(s) 360, 516, 602, 935
BfmI CTRYAG 1 cut(s) 814
BfrI CTTAAG 1 cut(s) 452
BfuAI ACCTGC 1 cut(s) 719
BisI GCNGC 9 cut(s) 537, 540, 543, 546, 549, 658, 850, 879, 1059
BlsI GCNGC 9 cut(s) 538, 541, 544, 547, 550, 659, 851, 880, 1060
Bme1390I CCNGG 5 cut(s) 281, 471, 648, 837, 981
Bme18I GGWCC 1 cut(s) 519
BmgT120I GGNCC 2 cut(s) 224, 519
BmiI GGNNCC 1 cut(s) 841
BmrFI CCNGG 5 cut(s) 281, 471, 648, 837, 981
BmsI GCATC 1 cut(s) 1070
Bpu10I CCTNAGC 3 cut(s) 78, 762, 771
BpuEI CTTGAG 2 cut(s) 38, 395
Bsa29I ATCGAT 1 cut(s) 45
BsaBI GATNNNNATC 1 cut(s) 672
BsaJI CCNNGG 3 cut(s) 65, 469, 499
BsaWI WCCGGW 1 cut(s) 521
Bsc4I CCNNNNNNNGG 6 cut(s) 132, 353, 653, 728, 794, 986
Bse118I RCCGGY 1 cut(s) 953
Bse1I ACTGG 3 cut(s) 496, 843, 1027
Bse3DI GCAATG 1 cut(s) 507
Bse8I GATNNNNATC 1 cut(s) 672
BseAI TCCGGA 1 cut(s) 521
BseBI CCWGG 5 cut(s) 281, 471, 648, 837, 981
BseCI ATCGAT 1 cut(s) 45
BseDI CCNNGG 3 cut(s) 65, 469, 499
BseGI GGATG 1 cut(s) 223
BseJI GATNNNNATC 1 cut(s) 672
BseLI CCNNNNNNNGG 6 cut(s) 132, 353, 653, 728, 794, 986
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 3 cut(s) 69, 753, 785
BseNI ACTGG 3 cut(s) 496, 843, 1027
BseXI GCAGC 9 cut(s) 523, 526, 529, 532, 535, 669, 836, 865, 1045
BseYI CCCAGC 1 cut(s) 724
BsgI GTGCAG 1 cut(s) 835
Bsh1236I CGCG 1 cut(s) 687
BshFI GGCC 1 cut(s) 225
BshNI GGYRCC 1 cut(s) 839
BshVI ATCGAT 1 cut(s) 45
BsiSI CCGG 2 cut(s) 522, 954
BslFI GGGAC 2 cut(s) 348, 705
BslI CCNNNNNNNGG 6 cut(s) 132, 353, 653, 728, 794, 986
BsmAI GTCTC 1 cut(s) 570
BsmFI GGGAC 2 cut(s) 348, 705
BsmI GAATGC 1 cut(s) 923
BsnI GGCC 1 cut(s) 225
Bsp13I TCCGGA 1 cut(s) 521
Bsp143I GATC 6 cut(s) 208, 379, 465, 610, 832, 1051
BspANI GGCC 1 cut(s) 225
BspCNI CTCAG 3 cut(s) 70, 754, 784
BspDI ATCGAT 1 cut(s) 45
BspEI TCCGGA 1 cut(s) 521
BspFNI CGCG 1 cut(s) 687
BspLI GGNNCC 1 cut(s) 841
BspMAI CTGCAG 1 cut(s) 818
BspMI ACCTGC 1 cut(s) 719
BspPI GGATC 3 cut(s) 387, 460, 827
BspT107I GGYRCC 1 cut(s) 839
BspTI CTTAAG 1 cut(s) 452
BsrDI GCAATG 1 cut(s) 507
BsrFI RCCGGY 1 cut(s) 953
BsrI ACTGG 3 cut(s) 496, 843, 1027
BssAI RCCGGY 1 cut(s) 953
BssECI CCNNGG 3 cut(s) 65, 469, 499
BssMI GATC 6 cut(s) 208, 379, 465, 610, 832, 1051
BssSI CACGAG 1 cut(s) 326
BssT1I CCWWGG 1 cut(s) 65
Bst2BI CACGAG 1 cut(s) 326
Bst2UI CCWGG 5 cut(s) 281, 471, 648, 837, 981
Bst4CI ACNGT 1 cut(s) 500
Bst6I CTCTTC 2 cut(s) 35, 762
BstAFI CTTAAG 1 cut(s) 452
BstC8I GCNNGC 1 cut(s) 25
BstDEI CTNAG 4 cut(s) 78, 432, 762, 771
BstDSI CCRYGG 1 cut(s) 499
BstEII GGTNACC 1 cut(s) 494
BstF5I GGATG 1 cut(s) 223
BstFNI CGCG 1 cut(s) 687
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 6 cut(s) 211, 382, 468, 613, 835, 1054
BstMAI GTCTC 1 cut(s) 570
BstMBI GATC 6 cut(s) 208, 379, 465, 610, 832, 1051
BstMWI GCNNNNNNNGC 4 cut(s) 542, 545, 548, 772
BstNI CCWGG 5 cut(s) 281, 471, 648, 837, 981
BstNSI RCATGY 1 cut(s) 88
BstPI GGTNACC 1 cut(s) 494
BstSCI CCNGG 5 cut(s) 279, 469, 646, 835, 979
BstSFI CTRYAG 1 cut(s) 814
BstUI CGCG 1 cut(s) 687
BstV1I GCAGC 9 cut(s) 523, 526, 529, 532, 535, 669, 836, 865, 1045
Bsu15I ATCGAT 1 cut(s) 45
BsuRI GGCC 1 cut(s) 225
BsuTUI ATCGAT 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 499
BtsCI GGATG 1 cut(s) 223
BtsI GCAGTG 1 cut(s) 823
BtsIMutI CAGTG 3 cut(s) 573, 823, 850
BveI ACCTGC 1 cut(s) 719
Cac8I GCNNGC 1 cut(s) 25
CaiI CAGNNNCTG 1 cut(s) 849
CfoI GCGC 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 953
Cfr13I GGNCC 2 cut(s) 224, 519
ClaI ATCGAT 1 cut(s) 45
CseI GACGC 1 cut(s) 394
CsiI ACCWGGT 2 cut(s) 646, 979
Csp6I GTAC 4 cut(s) 121, 331, 489, 840
CviAII CATG 3 cut(s) 85, 608, 691
CviQI GTAC 4 cut(s) 121, 331, 489, 840
DdeI CTNAG 4 cut(s) 78, 432, 762, 771
DpnI GATC 6 cut(s) 210, 381, 467, 612, 834, 1053
DpnII GATC 6 cut(s) 208, 379, 465, 610, 832, 1051
Eam1104I CTCTTC 2 cut(s) 35, 762
EarI CTCTTC 2 cut(s) 35, 762
Eco130I CCWWGG 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 519
Eco57I CTGAAG 3 cut(s) 112, 597, 828
Eco91I GGTNACC 1 cut(s) 494
EcoO65I GGTNACC 1 cut(s) 494
EcoRI GAATTC 1 cut(s) 742
EcoRII CCWGG 5 cut(s) 279, 469, 646, 835, 979
EcoT14I CCWWGG 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 3 cut(s) 88, 611, 694
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FaqI GGGAC 2 cut(s) 348, 705
FatI CATG 3 cut(s) 84, 607, 690
FauNDI CATATG 2 cut(s) 561, 894
Fnu4HI GCNGC 9 cut(s) 537, 540, 543, 546, 549, 658, 850, 879, 1059
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 9 cut(s) 537, 540, 543, 546, 549, 658, 850, 879, 1059
FspBI CTAG 4 cut(s) 360, 516, 602, 935
GlaI GCGC 1 cut(s) 83
GluI GCNGC 9 cut(s) 537, 540, 543, 546, 549, 658, 850, 879, 1059
GsaI CCCAGC 1 cut(s) 728
HaeIII GGCC 1 cut(s) 225
HapII CCGG 2 cut(s) 522, 954
HgaI GACGC 1 cut(s) 394
HhaI GCGC 1 cut(s) 84
Hin1II CATG 3 cut(s) 88, 611, 694
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 5 cut(s) 95, 428, 556, 694, 889
HpaII CCGG 2 cut(s) 522, 954
HphI GGTGA 5 cut(s) 485, 653, 743, 986, 1016
Hpy166II GTNNAC 2 cut(s) 644, 977
Hpy188I TCNGA 4 cut(s) 667, 741, 1042, 1066
Hpy188III TCNNGA 8 cut(s) 193, 522, 632, 698, 761, 806, 965, 1076
Hpy8I GTNNAC 2 cut(s) 644, 977
HpyAV CCTTC 4 cut(s) 136, 271, 278, 286
HpyCH4III ACNGT 1 cut(s) 500
HpyCH4V TGCA 7 cut(s) 243, 325, 339, 551, 816, 852, 1061
HpyF10VI GCNNNNNNNGC 4 cut(s) 542, 545, 548, 772
HpyF3I CTNAG 4 cut(s) 78, 432, 762, 771
Hsp92II CATG 3 cut(s) 88, 611, 694
HspAI GCGC 1 cut(s) 82
Kpn2I TCCGGA 1 cut(s) 521
KpnI GGTACC 1 cut(s) 843
Kzo9I GATC 6 cut(s) 208, 379, 465, 610, 832, 1051
LmnI GCTCC 1 cut(s) 808
Lsp1109I GCAGC 9 cut(s) 523, 526, 529, 532, 535, 669, 836, 865, 1045
LweI GCATC 1 cut(s) 1070
MabI ACCWGGT 2 cut(s) 646, 979
MaeI CTAG 4 cut(s) 360, 516, 602, 935
MaeIII GTNAC 3 cut(s) 8, 304, 494
MalI GATC 6 cut(s) 210, 381, 467, 612, 834, 1053
MboI GATC 6 cut(s) 208, 379, 465, 610, 832, 1051
MboII GAAGA 6 cut(s) 22, 208, 457, 590, 749, 923
MluCI AATT 6 cut(s) 71, 476, 742, 824, 915, 1034
MmeI TCCRAC 2 cut(s) 174, 927
MroI TCCGGA 1 cut(s) 521
MroXI GAANNNNTTC 2 cut(s) 233, 582
MseI TTAA 4 cut(s) 257, 342, 453, 672
MslI CAYNNNNRTG 1 cut(s) 969
MspA1I CMGCKG 3 cut(s) 132, 315, 425
MspCI CTTAAG 1 cut(s) 452
MspI CCGG 2 cut(s) 522, 954
MspR9I CCNGG 5 cut(s) 281, 471, 648, 837, 981
Mva1269I GAATGC 1 cut(s) 923
MvaI CCWGG 5 cut(s) 281, 471, 648, 837, 981
MvnI CGCG 1 cut(s) 687
MwoI GCNNNNNNNGC 4 cut(s) 542, 545, 548, 772
NdeI CATATG 2 cut(s) 561, 894
NdeII GATC 6 cut(s) 208, 379, 465, 610, 832, 1051
NlaIII CATG 3 cut(s) 88, 611, 694
NlaIV GGNNCC 1 cut(s) 841
NmuCI GTSAC 1 cut(s) 8
NspI RCATGY 1 cut(s) 88
OliI CACNNNNGTG 1 cut(s) 969
PaqCI CACCTGC 1 cut(s) 719
PctI GAATGC 1 cut(s) 923
PdmI GAANNNNTTC 2 cut(s) 233, 582
PfeI GAWTC 5 cut(s) 95, 428, 556, 694, 889
PflMI CCANNNNNTGG 1 cut(s) 794
PfoI TCCNGGA 1 cut(s) 279
PkrI GCNGC 9 cut(s) 538, 541, 544, 547, 550, 659, 851, 880, 1060
Psp6I CCWGG 5 cut(s) 279, 469, 646, 835, 979
PspEI GGTNACC 1 cut(s) 494
PspFI CCCAGC 1 cut(s) 724
PspGI CCWGG 5 cut(s) 279, 469, 646, 835, 979
PspN4I GGNNCC 1 cut(s) 841
PspPI GGNCC 2 cut(s) 224, 519
PstI CTGCAG 1 cut(s) 818
PstNI CAGNNNCTG 1 cut(s) 849
PvuII CAGCTG 3 cut(s) 132, 315, 425
RsaI GTAC 4 cut(s) 122, 332, 490, 841
RsaNI GTAC 4 cut(s) 121, 331, 489, 840
RseI CAYNNNNRTG 1 cut(s) 969
SaqAI TTAA 4 cut(s) 257, 342, 453, 672
SatI GCNGC 9 cut(s) 537, 540, 543, 546, 549, 658, 850, 879, 1059
Sau3AI GATC 6 cut(s) 208, 379, 465, 610, 832, 1051
Sau96I GGNCC 2 cut(s) 224, 519
ScrFI CCNGG 5 cut(s) 281, 471, 648, 837, 981
SexAI ACCWGGT 2 cut(s) 646, 979
SfaNI GCATC 1 cut(s) 1070
SfcI CTRYAG 1 cut(s) 814
SinI GGWCC 1 cut(s) 519
SmiMI CAYNNNNRTG 1 cut(s) 969
SmlI CTYRAG 4 cut(s) 18, 53, 410, 452
SmoI CTYRAG 4 cut(s) 18, 53, 410, 452
Sse9I AATT 6 cut(s) 71, 476, 742, 824, 915, 1034
SspI AATATT 1 cut(s) 233
SspMI CTAG 4 cut(s) 360, 516, 602, 935
StyD4I CCNGG 5 cut(s) 279, 469, 646, 835, 979
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 500
TaqI TCGA 4 cut(s) 45, 60, 1047, 1054
TasI AATT 6 cut(s) 71, 476, 742, 824, 915, 1034
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 5 cut(s) 95, 428, 556, 694, 889
Tru1I TTAA 4 cut(s) 257, 342, 453, 672
Tru9I TTAA 4 cut(s) 257, 342, 453, 672
TscAI CASTG 3 cut(s) 580, 823, 850
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 9 cut(s) 536, 539, 542, 545, 548, 657, 849, 878, 1058
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 5 cut(s) 17, 215, 546, 902, 1032
TspGWI ACGGA 1 cut(s) 292
TspRI CASTG 3 cut(s) 580, 823, 850
Van91I CCANNNNNTGG 1 cut(s) 794
Vha464I CTTAAG 1 cut(s) 452
VpaK11BI GGWCC 1 cut(s) 519
XapI RAATTY 3 cut(s) 742, 915, 1034
XceI RCATGY 1 cut(s) 88
XmnI GAANNNNTTC 2 cut(s) 233, 582
XspI CTAG 4 cut(s) 360, 516, 602, 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.