pycom07g15840
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0007535
Physical Location & Seq
Reverse (-)
18358870 .. 18360596
1727 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g15840.1

Sequence Viewer

Length: 957 bp
ATGGGAAACATCAGCAGCACCACCACCACATCAACAACCGCACAATCGGTGCCGGACATGGTGCCTGCGATCAGATTCCATCCAACTGAAGAGGAAATGGCAGACTTCTTGTGGAAGAAAATGAAAAGTCACAACTCCCAAGCCTGCCATTCCCTCCCTGTCATCGATGTCTGCAAGTTCGAGCCTTGGGATTTGCCTGAGCGCATGTTCCCTGACACTCCATATCAAGCTAAGGCATGGTACTCATTCAGCCAGCCTGATTACAAATACATCAATAGTCCTCGCTGCAACAGGATCACTGAGAAAGGCTTCTGGAAAATCACAGGCAAGCCACGAGATATCAGCTCCACACATGTCACTTGCAAAAAGAGAACCTTGACCTTCTACAAAGGTCGTGTGTCTAAATCCGAGAGGACTGGCTGGGTGATGCACGAGTACTATTTCACTAAACCTAAACAGGGTTCTAATACCAGTCAGGAGAGGGATCCGCTGAGGGACTTTGTTCTTTACCGCTTAAAGAAGAAGCCAAATTCTATGTCTGATAACAAGAAGCTTCAGGATACTTTGATCAGTGATGATTTAACTGATCCGGGTAATGGTAGTTGCATTGCATCTAGTTCCGGAAATGATCAAGCAGCTACTGCTGCTGCAATGAATCATGATATGACTCCAGCTGCAGAAGAACTTCTTGCATACAAAGAGCTAGAAGATGATCTGTTTGACAGTGGAAATCATGATCGTGGTGAACCTGGTGGCGGCATCTCATCTGATTCTACTGATCAAGTTATACGTGACATGATTCAACAGTGGAAGTCGTGTGCTCCGGTAGGTGAATATCTGAATTCACTCTTGACTCTTCCTGAGCCACCTCAGCCACCTCAGCCACATCAGCCACCTCAGCTTGGAAATGCTCCTGATGTCTCACCGGTAATACTGATAACCAAGATGCTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

319

Amino Acids

35.77

Weight (kDa)

6.08

Isoelectric Point (pI)

55.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 22 - 147 1.3e-29 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 49, 61
AccIII TCCGGA 1 cut(s) 620
AciI CCGC 4 cut(s) 39, 488, 511, 756
AclWI GGATC 4 cut(s) 302, 479, 492, 581
AcsI RAATTY 2 cut(s) 529, 841
AcuI CTGAAG 2 cut(s) 108, 539
AfaI GTAC 2 cut(s) 242, 437
AfiI CCNNNNNNNGG 4 cut(s) 458, 596, 755, 902
AflIII ACRYGT 1 cut(s) 352
AgeI ACCGGT 1 cut(s) 925
AgsI TTSAA 1 cut(s) 803
AjnI CCWGG 1 cut(s) 748
AluBI AGCT 7 cut(s) 230, 345, 553, 638, 674, 703, 901
AluI AGCT 7 cut(s) 230, 345, 553, 638, 674, 703, 901
Alw21I GWGCWC 1 cut(s) 823
Alw26I GTCTC 1 cut(s) 925
AlwI GGATC 4 cut(s) 302, 479, 492, 581
AlwNI CAGNNNCTG 1 cut(s) 641
Aor13HI TCCGGA 1 cut(s) 620
ApeKI GCWGC 7 cut(s) 15, 285, 635, 644, 647, 674, 949
ApoI RAATTY 2 cut(s) 529, 841
ArsI GACNNNNNNTTYG 2 cut(s) 521, 553
AsiGI ACCGGT 1 cut(s) 925
Asp700I GAANNNNTTC 2 cut(s) 308, 684
AspLEI GCGC 1 cut(s) 204
AsuC2I CCSGG 1 cut(s) 591
AsuHPI GGTGA 4 cut(s) 436, 755, 842, 915
BamHI GGATCC 1 cut(s) 484
BanI GGYRCC 2 cut(s) 49, 61
BauI CACGAG 2 cut(s) 333, 431
Bbv12I GWGCWC 1 cut(s) 823
BbvCI CCTCAGC 4 cut(s) 491, 870, 879, 897
BbvI GCAGC 7 cut(s) 27, 272, 631, 634, 647, 661, 936
BccI CCATC 1 cut(s) 87
BciT130I CCWGG 1 cut(s) 750
BciVI GTATCC 1 cut(s) 553
BclI TGATCA 3 cut(s) 567, 628, 778
BcnI CCSGG 1 cut(s) 591
BcoDI GTCTC 1 cut(s) 925
BfaI CTAG 2 cut(s) 615, 704
BfmI CTRYAG 1 cut(s) 675
BfuI GTATCC 1 cut(s) 553
BisI GCNGC 8 cut(s) 16, 286, 636, 645, 648, 675, 757, 950
BlsI GCNGC 8 cut(s) 17, 287, 637, 646, 649, 676, 758, 951
BmcAI AGTACT 1 cut(s) 437
Bme1390I CCNGG 2 cut(s) 591, 750
BmiI GGNNCC 3 cut(s) 51, 63, 486
BmrFI CCNGG 2 cut(s) 591, 750
BmsI GCATC 4 cut(s) 417, 620, 768, 936
BpmI CTGGAG 1 cut(s) 654
Bpu10I CCTNAGC 7 cut(s) 198, 231, 491, 861, 870, 879, 897
BpuMI CCSGG 1 cut(s) 591
Bsa29I ATCGAT 1 cut(s) 165
BsaAI YACGTR 1 cut(s) 791
BsaJI CCNNGG 1 cut(s) 185
BsaWI WCCGGW 3 cut(s) 620, 823, 925
Bsc4I CCNNNNNNNGG 4 cut(s) 458, 596, 755, 902
Bse118I RCCGGY 1 cut(s) 925
Bse1I ACTGG 2 cut(s) 421, 471
Bse3DI GCAATG 2 cut(s) 606, 657
BseAI TCCGGA 1 cut(s) 620
BseBI CCWGG 1 cut(s) 750
BseCI ATCGAT 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 4 cut(s) 458, 596, 755, 902
BseMI GCAATG 2 cut(s) 606, 657
BseMII CTCAG 7 cut(s) 189, 291, 482, 852, 884, 893, 911
BseNI ACTGG 2 cut(s) 421, 471
BseXI GCAGC 7 cut(s) 27, 272, 631, 634, 647, 661, 936
BseYI CCCAGC 1 cut(s) 420
BshNI GGYRCC 2 cut(s) 49, 61
BshTI ACCGGT 1 cut(s) 925
BshVI ATCGAT 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 823
BsiSI CCGG 5 cut(s) 53, 590, 621, 824, 926
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 4 cut(s) 458, 596, 755, 902
BsmAI GTCTC 1 cut(s) 925
BsmFI GGGAC 1 cut(s) 509
Bsp1286I GDGCHC 1 cut(s) 823
Bsp13I TCCGGA 1 cut(s) 620
Bsp143I GATC 9 cut(s) 69, 294, 484, 567, 586, 628, 712, 736, 778
BspACI CCGC 4 cut(s) 39, 488, 511, 756
BspCNI CTCAG 7 cut(s) 190, 292, 483, 853, 883, 892, 910
BspDI ATCGAT 1 cut(s) 165
BspEI TCCGGA 1 cut(s) 620
BspHI TCATGA 2 cut(s) 658, 733
BspLI GGNNCC 3 cut(s) 51, 63, 486
BspMAI CTGCAG 1 cut(s) 679
BspPI GGATC 4 cut(s) 302, 479, 492, 581
BspT107I GGYRCC 2 cut(s) 49, 61
BsrDI GCAATG 2 cut(s) 606, 657
BsrFI RCCGGY 1 cut(s) 925
BsrI ACTGG 2 cut(s) 421, 471
BssAI RCCGGY 1 cut(s) 925
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 9 cut(s) 69, 294, 484, 567, 586, 628, 712, 736, 778
BssSI CACGAG 2 cut(s) 333, 431
BssT1I CCWWGG 1 cut(s) 185
Bst2BI CACGAG 2 cut(s) 333, 431
Bst2UI CCWGG 1 cut(s) 750
Bst4CI ACNGT 2 cut(s) 725, 807
Bst6I CTCTTC 2 cut(s) 84, 861
BstAPI GCANNNNNTGC 1 cut(s) 641
BstBAI YACGTR 1 cut(s) 791
BstC8I GCNNGC 4 cut(s) 66, 145, 254, 329
BstDEI CTNAG 8 cut(s) 198, 231, 300, 491, 861, 870, 879, 897
BstF5I GGATG 1 cut(s) 79
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 9 cut(s) 72, 297, 487, 570, 589, 631, 715, 739, 781
BstMAI GTCTC 1 cut(s) 925
BstMBI GATC 9 cut(s) 69, 294, 484, 567, 586, 628, 712, 736, 778
BstMWI GCNNNNNNNGC 6 cut(s) 641, 644, 871, 880, 889, 898
BstNI CCWGG 1 cut(s) 750
BstNSI RCATGY 2 cut(s) 208, 356
BstSCI CCNGG 2 cut(s) 589, 748
BstSFI CTRYAG 1 cut(s) 675
BstV1I GCAGC 7 cut(s) 27, 272, 631, 634, 647, 661, 936
BstX2I RGATCY 1 cut(s) 484
BstYI RGATCY 1 cut(s) 484
Bsu15I ATCGAT 1 cut(s) 165
BsuI GTATCC 1 cut(s) 553
BsuTUI ATCGAT 1 cut(s) 165
BtsCI GGATG 1 cut(s) 79
BtsIMutI CAGTG 4 cut(s) 297, 577, 730, 812
Cac8I GCNNGC 4 cut(s) 66, 145, 254, 329
CaiI CAGNNNCTG 1 cut(s) 641
CciI TCATGA 2 cut(s) 658, 733
CfoI GCGC 1 cut(s) 204
Cfr10I RCCGGY 1 cut(s) 925
ClaI ATCGAT 1 cut(s) 165
CsiI ACCWGGT 1 cut(s) 748
Csp6I GTAC 2 cut(s) 241, 436
CspAI ACCGGT 1 cut(s) 925
CviAII CATG 7 cut(s) 58, 205, 237, 353, 659, 734, 796
CviQI GTAC 2 cut(s) 241, 436
DdeI CTNAG 8 cut(s) 198, 231, 300, 491, 861, 870, 879, 897
DpnI GATC 9 cut(s) 71, 296, 486, 569, 588, 630, 714, 738, 780
DpnII GATC 9 cut(s) 69, 294, 484, 567, 586, 628, 712, 736, 778
Eam1104I CTCTTC 2 cut(s) 84, 861
EarI CTCTTC 2 cut(s) 84, 861
Eco130I CCWWGG 1 cut(s) 185
Eco32I GATATC 1 cut(s) 340
Eco57I CTGAAG 2 cut(s) 108, 539
EcoRI GAATTC 1 cut(s) 841
EcoRII CCWGG 1 cut(s) 748
EcoRV GATATC 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 7 cut(s) 61, 208, 240, 356, 662, 737, 799
FalI AAGNNNNNCTT 4 cut(s) 359, 391, 672, 704
FaqI GGGAC 1 cut(s) 509
FatI CATG 7 cut(s) 57, 204, 236, 352, 658, 733, 795
FbaI TGATCA 3 cut(s) 567, 628, 778
Fnu4HI GCNGC 8 cut(s) 16, 286, 636, 645, 648, 675, 757, 950
FokI GGATG 1 cut(s) 66
Fsp4HI GCNGC 8 cut(s) 16, 286, 636, 645, 648, 675, 757, 950
FspBI CTAG 2 cut(s) 615, 704
GlaI GCGC 1 cut(s) 203
GluI GCNGC 8 cut(s) 16, 286, 636, 645, 648, 675, 757, 950
GsaI CCCAGC 1 cut(s) 424
GsuI CTGGAG 1 cut(s) 654
HapII CCGG 5 cut(s) 53, 590, 621, 824, 926
HhaI GCGC 1 cut(s) 204
Hin1II CATG 7 cut(s) 61, 208, 240, 356, 662, 737, 799
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 551
HinfI GANTC 6 cut(s) 75, 655, 667, 770, 799, 853
HpaII CCGG 5 cut(s) 53, 590, 621, 824, 926
HphI GGTGA 4 cut(s) 436, 755, 842, 915
Hpy166II GTNNAC 1 cut(s) 746
Hpy188I TCNGA 5 cut(s) 74, 409, 541, 769, 840
Hpy188III TCNNGA 9 cut(s) 313, 476, 557, 621, 659, 734, 850, 860, 914
Hpy8I GTNNAC 1 cut(s) 746
HpyAV CCTTC 1 cut(s) 391
HpyCH4III ACNGT 2 cut(s) 725, 807
HpyCH4IV ACGT 1 cut(s) 790
HpyF10VI GCNNNNNNNGC 6 cut(s) 641, 644, 871, 880, 889, 898
HpyF3I CTNAG 8 cut(s) 198, 231, 300, 491, 861, 870, 879, 897
HpySE526I ACGT 1 cut(s) 790
Hsp92II CATG 7 cut(s) 61, 208, 240, 356, 662, 737, 799
HspAI GCGC 1 cut(s) 202
Kpn2I TCCGGA 1 cut(s) 620
Ksp22I TGATCA 3 cut(s) 567, 628, 778
Kzo9I GATC 9 cut(s) 69, 294, 484, 567, 586, 628, 712, 736, 778
LmnI GCTCC 3 cut(s) 350, 826, 916
Lsp1109I GCAGC 7 cut(s) 27, 272, 631, 634, 647, 661, 936
LweI GCATC 4 cut(s) 417, 620, 768, 936
MabI ACCWGGT 1 cut(s) 748
MaeI CTAG 2 cut(s) 615, 704
MaeII ACGT 1 cut(s) 790
MaeIII GTNAC 3 cut(s) 128, 355, 791
MalI GATC 9 cut(s) 71, 296, 486, 569, 588, 630, 714, 738, 780
MboI GATC 9 cut(s) 69, 294, 484, 567, 586, 628, 712, 736, 778
MboII GAAGA 6 cut(s) 101, 127, 532, 692, 719, 848
MflI RGATCY 1 cut(s) 484
MhlI GDGCHC 1 cut(s) 823
MluCI AATT 2 cut(s) 529, 841
MlyI GAGTC 2 cut(s) 661, 847
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 9 cut(s) 85, 164, 291, 405, 474, 486, 879, 888, 906
MroI TCCGGA 1 cut(s) 620
MroXI GAANNNNTTC 2 cut(s) 308, 684
MseI TTAA 2 cut(s) 515, 581
MslI CAYNNNNRTG 1 cut(s) 738
MspA1I CMGCKG 2 cut(s) 490, 674
MspI CCGG 5 cut(s) 53, 590, 621, 824, 926
MspR9I CCNGG 2 cut(s) 591, 750
MvaI CCWGG 1 cut(s) 750
MwoI GCNNNNNNNGC 6 cut(s) 641, 644, 871, 880, 889, 898
NciI CCSGG 1 cut(s) 591
NdeII GATC 9 cut(s) 69, 294, 484, 567, 586, 628, 712, 736, 778
NlaIII CATG 7 cut(s) 61, 208, 240, 356, 662, 737, 799
NlaIV GGNNCC 3 cut(s) 51, 63, 486
NmuCI GTSAC 3 cut(s) 128, 355, 791
NspI RCATGY 2 cut(s) 208, 356
PagI TCATGA 2 cut(s) 658, 733
PciI ACATGT 1 cut(s) 352
PdmI GAANNNNTTC 2 cut(s) 308, 684
PfeI GAWTC 4 cut(s) 75, 655, 770, 799
PinAI ACCGGT 1 cut(s) 925
PkrI GCNGC 8 cut(s) 17, 287, 637, 646, 649, 676, 758, 951
PleI GAGTC 2 cut(s) 661, 847
PpsI GAGTC 2 cut(s) 661, 847
Ppu21I YACGTR 1 cut(s) 791
PscI ACATGT 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 748
PspFI CCCAGC 1 cut(s) 420
PspGI CCWGG 1 cut(s) 748
PspN4I GGNNCC 3 cut(s) 51, 63, 486
PstI CTGCAG 1 cut(s) 679
PstNI CAGNNNCTG 1 cut(s) 641
PsuI RGATCY 1 cut(s) 484
PvuII CAGCTG 1 cut(s) 674
RsaI GTAC 2 cut(s) 242, 437
RsaNI GTAC 2 cut(s) 241, 436
RseI CAYNNNNRTG 1 cut(s) 738
SaqAI TTAA 2 cut(s) 515, 581
SatI GCNGC 8 cut(s) 16, 286, 636, 645, 648, 675, 757, 950
Sau3AI GATC 9 cut(s) 69, 294, 484, 567, 586, 628, 712, 736, 778
ScaI AGTACT 1 cut(s) 437
SchI GAGTC 2 cut(s) 661, 847
ScrFI CCNGG 2 cut(s) 591, 750
SduI GDGCHC 1 cut(s) 823
SexAI ACCWGGT 1 cut(s) 748
SfaNI GCATC 4 cut(s) 417, 620, 768, 936
SfcI CTRYAG 1 cut(s) 675
SmiMI CAYNNNNRTG 1 cut(s) 738
Sse9I AATT 2 cut(s) 529, 841
SsiI CCGC 4 cut(s) 39, 488, 511, 756
SspMI CTAG 2 cut(s) 615, 704
StyD4I CCNGG 2 cut(s) 589, 748
StyI CCWWGG 1 cut(s) 185
TaaI ACNGT 2 cut(s) 725, 807
TaiI ACGT 1 cut(s) 793
TaqI TCGA 2 cut(s) 165, 180
TasI AATT 2 cut(s) 529, 841
TatI WGTACW 1 cut(s) 435
TauI GCSGC 1 cut(s) 759
TfiI GAWTC 4 cut(s) 75, 655, 770, 799
Tru1I TTAA 2 cut(s) 515, 581
Tru9I TTAA 2 cut(s) 515, 581
TscAI CASTG 4 cut(s) 304, 577, 730, 812
TseFI GTSAC 3 cut(s) 128, 355, 791
TseI GCWGC 7 cut(s) 15, 285, 635, 644, 647, 674, 949
Tsp45I GTSAC 3 cut(s) 128, 355, 791
TspDTI ATGAA 2 cut(s) 137, 668
TspRI CASTG 4 cut(s) 304, 577, 730, 812
XapI RAATTY 2 cut(s) 529, 841
XceI RCATGY 2 cut(s) 208, 356
XmnI GAANNNNTTC 2 cut(s) 308, 684
XspI CTAG 2 cut(s) 615, 704
ZrmI AGTACT 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.