pycom01g11630
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0007535
Physical Location & Seq
Reverse (-)
12650631 .. 12652412
1782 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11630.1

Sequence Viewer

Length: 1287 bp
ATGTTCCCTGATTCTCCACATCATGCTAAGGCGTGGTACTCCTTCAGCCCGTGTGATTACAAATCCATCAATAGTCGTCGCTTCAATAGGGAAACAAAGAAAGGCTCTTGGAAGATGAACAGCAAGCAACGGGATGTGGGCACGAAATATTTCACTTGCAAAAAGAGGACATTAACCTTCCAAATAAAGACCTTCCAAGAAGGTAGTAAGTCTAAATCCATTCCGACCGGCTGGAAAATGCACGAGTACATTTGCATTAAACCTAAACGGGGTTCTAGTCCCCATCAGGAGAGGGATCAGCGAAGGGACTTTGTTCTCTGCGTCCTGAAGTATAAGCCAGTTGATTCTAAGTCTAATACGGGTACTTCGATCCGGGGTGATTTTGCTGATAGTACTGGTAATCGTGGCTACATTGCCTCTAGTTCCGGAGATGATGAATCTGCTGTTGCTGCTGCATTGAATCAAGATGATGGTGAACCTGGTGGCGGCAGCAGCTCATCTGATTTTATTAATAAATCTCTATGCGACATGATTCAAGAGTGGCAGTCATATGCTCCGGCAGGAGAATGTCTGAATTCACTCCTTCCTCTTCCTGAACAACCTCAGCTTCGACATTCTCTTGATATCGATAGTCATGAAGTGGTTGATCCTGGTACTGGTGGCTGCATCACCTATAATTCTGATAACCAAGCTGCTGCAACGAATCATATTATTCCCAACACAGAAGAAATTCTTGCATGCAAACATCTAGAAGGAAGTGCTGTGCTTGGCAGTGGCAATCATGATGACGGTGAACCTGGTAGCGGTATTTCATCTGATTTTAATGACCATGCAGTAGATGATATGCAGGAGTTTAATCAGCTAGACAAACTTTTGGATTTGCCCTTATCGCCTCCTGAGCTGTCTCAACCACACCAGCTGGAAAATGTTCCGGGCGTCCATAGTGGCAAATTCAGTAACTGGCCATCTCCAATTGGGGTTAATACTTCTTATGTTACTAATAAGAATAATATTGCAACCAATTACGAAAAAGAACCAGTTATCAACAGCGCTTTTAATTCTTATAATCGAGCTACAGATGAAAGGATTTCCGAGGTTTATTCTCAGGCAGAAGAAAATCTGGGTTTACCCTTTCAACCATTTGATCAGCTACAAAATTACGCATGGCAATCACCAATGTTGTTCTCAGAAGTGGGAGAGCTTCTGCTTGCCAATAACTATATTGGATGCAACGAGTCGCAATTTCTAGATATGGAGGTTGCGACTCTTTTCCCACAAAGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

429

Amino Acids

47.48

Weight (kDa)

5.1

Isoelectric Point (pI)

51.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 83 1.7e-10 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1065
AccIII TCCGGA 1 cut(s) 425
AciI CCGC 2 cut(s) 486, 804
AclWI GGATC 3 cut(s) 303, 364, 641
AcoI YGGCCR 1 cut(s) 962
AcsI RAATTY 3 cut(s) 574, 729, 950
AcuI CTGAAG 2 cut(s) 28, 347
AcyI GRCGYC 1 cut(s) 936
AfaI GTAC 5 cut(s) 38, 248, 364, 394, 655
AfeI AGCGCT 1 cut(s) 1051
AfiI CCNNNNNNNGG 4 cut(s) 269, 485, 656, 803
AgsI TTSAA 4 cut(s) 85, 460, 536, 1136
AjnI CCWGG 3 cut(s) 478, 649, 796
AluBI AGCT 9 cut(s) 495, 607, 692, 862, 901, 919, 1073, 1150, 1201
AluI AGCT 9 cut(s) 495, 607, 692, 862, 901, 919, 1073, 1150, 1201
Alw26I GTCTC 1 cut(s) 909
AlwI GGATC 3 cut(s) 303, 364, 641
AlwNI CAGNNNCTG 1 cut(s) 960
Aor13HI TCCGGA 1 cut(s) 425
Aor51HI AGCGCT 1 cut(s) 1051
AoxI GGCC 1 cut(s) 962
ApeKI GCWGC 7 cut(s) 449, 452, 489, 492, 663, 692, 695
ApoI RAATTY 3 cut(s) 574, 729, 950
AseI ATTAAT 1 cut(s) 510
Asp700I GAANNNNTTC 3 cut(s) 149, 729, 927
AspLEI GCGC 1 cut(s) 1052
AsuC2I CCSGG 2 cut(s) 374, 933
AsuHPI GGTGA 5 cut(s) 389, 485, 661, 803, 1164
BaeGI GKGCMC 1 cut(s) 143
BalI TGGCCA 1 cut(s) 964
BauI CACGAG 1 cut(s) 242
BbvCI CCTCAGC 1 cut(s) 603
BbvI GCAGC 7 cut(s) 436, 439, 501, 504, 650, 679, 682
BccI CCATC 4 cut(s) 74, 291, 464, 973
BciT130I CCWGG 3 cut(s) 480, 651, 798
BclI TGATCA 1 cut(s) 1144
BcnI CCSGG 2 cut(s) 374, 933
BcoDI GTCTC 1 cut(s) 909
BfaI CTAG 5 cut(s) 276, 420, 749, 863, 1247
BfmI CTRYAG 1 cut(s) 1074
BfoI RGCGCY 1 cut(s) 1053
BisI GCNGC 8 cut(s) 450, 453, 487, 490, 493, 664, 693, 696
BlsI GCNGC 8 cut(s) 451, 454, 488, 491, 494, 665, 694, 697
BmcAI AGTACT 1 cut(s) 394
Bme1390I CCNGG 5 cut(s) 374, 480, 651, 798, 933
BmrFI CCNGG 5 cut(s) 374, 480, 651, 798, 933
BmsI GCATC 2 cut(s) 675, 1217
Bpu10I CCTNAGC 3 cut(s) 27, 603, 897
BpuMI CCSGG 2 cut(s) 374, 933
Bsa29I ATCGAT 1 cut(s) 627
BsaHI GRCGYC 1 cut(s) 936
BsaJI CCNNGG 2 cut(s) 373, 1092
BsaWI WCCGGW 1 cut(s) 425
Bsc4I CCNNNNNNNGG 4 cut(s) 269, 485, 656, 803
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 5 cut(s) 338, 400, 661, 965, 1037
Bse3DI GCAATG 1 cut(s) 411
BseAI TCCGGA 1 cut(s) 425
BseBI CCWGG 3 cut(s) 480, 651, 798
BseCI ATCGAT 1 cut(s) 627
BseDI CCNNGG 2 cut(s) 373, 1092
BseGI GGATG 2 cut(s) 139, 1232
BseLI CCNNNNNNNGG 4 cut(s) 269, 485, 656, 803
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 4 cut(s) 617, 888, 1118, 1200
BseNI ACTGG 5 cut(s) 338, 400, 661, 965, 1037
BseSI GKGCMC 1 cut(s) 143
BseXI GCAGC 7 cut(s) 436, 439, 501, 504, 650, 679, 682
Bsh1285I CGRYCG 1 cut(s) 228
BshFI GGCC 1 cut(s) 964
BshVI ATCGAT 1 cut(s) 627
BsiEI CGRYCG 1 cut(s) 228
BsiSI CCGG 5 cut(s) 228, 373, 426, 557, 932
BslFI GGGAC 2 cut(s) 264, 320
BslI CCNNNNNNNGG 4 cut(s) 269, 485, 656, 803
BsmAI GTCTC 1 cut(s) 909
BsmFI GGGAC 2 cut(s) 264, 320
BsnI GGCC 1 cut(s) 964
Bsp1286I GDGCHC 1 cut(s) 143
Bsp13I TCCGGA 1 cut(s) 425
Bsp143I GATC 4 cut(s) 295, 369, 646, 1144
BspACI CCGC 2 cut(s) 486, 804
BspANI GGCC 1 cut(s) 964
BspCNI CTCAG 4 cut(s) 616, 889, 1117, 1199
BspDI ATCGAT 1 cut(s) 627
BspEI TCCGGA 1 cut(s) 425
BspHI TCATGA 2 cut(s) 634, 781
BspPI GGATC 3 cut(s) 303, 364, 641
BsrDI GCAATG 1 cut(s) 411
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 5 cut(s) 338, 400, 661, 965, 1037
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 2 cut(s) 373, 1092
BssMI GATC 4 cut(s) 295, 369, 646, 1144
BssNI GRCGYC 1 cut(s) 936
BssSI CACGAG 1 cut(s) 242
Bst2BI CACGAG 1 cut(s) 242
Bst2UI CCWGG 3 cut(s) 480, 651, 798
Bst4CI ACNGT 1 cut(s) 791
Bst6I CTCTTC 1 cut(s) 594
BstACI GRCGYC 1 cut(s) 936
BstC8I GCNNGC 3 cut(s) 125, 739, 1209
BstDEI CTNAG 6 cut(s) 27, 348, 603, 897, 1104, 1186
BstF5I GGATG 2 cut(s) 139, 1232
BstH2I RGCGCY 1 cut(s) 1053
BstHHI GCGC 1 cut(s) 1052
BstKTI GATC 4 cut(s) 298, 372, 649, 1147
BstMAI GTCTC 1 cut(s) 909
BstMBI GATC 4 cut(s) 295, 369, 646, 1144
BstMCI CGRYCG 1 cut(s) 228
BstMWI GCNNNNNNNGC 4 cut(s) 449, 492, 889, 898
BstNI CCWGG 3 cut(s) 480, 651, 798
BstNSI RCATGY 1 cut(s) 741
BstSCI CCNGG 5 cut(s) 372, 478, 649, 796, 931
BstSFI CTRYAG 1 cut(s) 1074
BstSLI GKGCMC 1 cut(s) 143
BstV1I GCAGC 7 cut(s) 436, 439, 501, 504, 650, 679, 682
Bsu15I ATCGAT 1 cut(s) 627
BsuRI GGCC 1 cut(s) 964
BsuTUI ATCGAT 1 cut(s) 627
BtsCI GGATG 2 cut(s) 139, 1232
BtsI GCAGTG 1 cut(s) 778
BtsIMutI CAGTG 1 cut(s) 778
Cac8I GCNNGC 3 cut(s) 125, 739, 1209
CaiI CAGNNNCTG 1 cut(s) 960
CciI TCATGA 2 cut(s) 634, 781
CfoI GCGC 1 cut(s) 1052
Cfr10I RCCGGY 1 cut(s) 227
ClaI ATCGAT 1 cut(s) 627
CseI GACGC 2 cut(s) 310, 925
CsiI ACCWGGT 2 cut(s) 478, 796
Csp6I GTAC 5 cut(s) 37, 247, 363, 393, 654
CviAII CATG 7 cut(s) 23, 529, 635, 738, 782, 830, 1164
CviQI GTAC 5 cut(s) 37, 247, 363, 393, 654
DdeI CTNAG 6 cut(s) 27, 348, 603, 897, 1104, 1186
DpnI GATC 4 cut(s) 297, 371, 648, 1146
DpnII GATC 4 cut(s) 295, 369, 646, 1144
EaeI YGGCCR 1 cut(s) 962
Eam1104I CTCTTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 594
Eco32I GATATC 1 cut(s) 625
Eco47III AGCGCT 1 cut(s) 1051
Eco57I CTGAAG 2 cut(s) 28, 347
EcoRI GAATTC 1 cut(s) 574
EcoRII CCWGG 3 cut(s) 478, 649, 796
EcoRV GATATC 1 cut(s) 625
FaeI CATG 7 cut(s) 26, 532, 638, 741, 785, 833, 1167
FalI AAGNNNNNCTT 2 cut(s) 717, 749
FaqI GGGAC 2 cut(s) 264, 320
FatI CATG 7 cut(s) 22, 528, 634, 737, 781, 829, 1163
FauNDI CATATG 1 cut(s) 550
FbaI TGATCA 1 cut(s) 1144
Fnu4HI GCNGC 8 cut(s) 450, 453, 487, 490, 493, 664, 693, 696
FokI GGATG 2 cut(s) 146, 1239
Fsp4HI GCNGC 8 cut(s) 450, 453, 487, 490, 493, 664, 693, 696
FspBI CTAG 5 cut(s) 276, 420, 749, 863, 1247
GlaI GCGC 1 cut(s) 1051
GluI GCNGC 8 cut(s) 450, 453, 487, 490, 493, 664, 693, 696
HaeII RGCGCY 1 cut(s) 1053
HaeIII GGCC 1 cut(s) 964
HapII CCGG 5 cut(s) 228, 373, 426, 557, 932
HgaI GACGC 2 cut(s) 310, 925
HhaI GCGC 1 cut(s) 1052
Hin1I GRCGYC 1 cut(s) 936
Hin1II CATG 7 cut(s) 26, 532, 638, 741, 785, 833, 1167
Hin6I GCGC 1 cut(s) 1050
HinP1I GCGC 1 cut(s) 1050
HinfI GANTC 8 cut(s) 11, 344, 437, 460, 532, 703, 1235, 1264
HpaII CCGG 5 cut(s) 228, 373, 426, 557, 932
HphI GGTGA 5 cut(s) 389, 485, 661, 803, 1164
Hpy166II GTNNAC 3 cut(s) 476, 794, 1127
Hpy188I TCNGA 7 cut(s) 225, 502, 573, 682, 817, 1093, 1189
Hpy8I GTNNAC 3 cut(s) 476, 794, 1127
Hpy99I CGWCG 1 cut(s) 81
HpyAV CCTTC 7 cut(s) 52, 187, 194, 202, 297, 593, 746
HpyCH4III ACNGT 1 cut(s) 791
HpyF10VI GCNNNNNNNGC 4 cut(s) 449, 492, 889, 898
HpyF3I CTNAG 6 cut(s) 27, 348, 603, 897, 1104, 1186
Hsp92I GRCGYC 1 cut(s) 936
Hsp92II CATG 7 cut(s) 26, 532, 638, 741, 785, 833, 1167
HspAI GCGC 1 cut(s) 1050
Kpn2I TCCGGA 1 cut(s) 425
Ksp22I TGATCA 1 cut(s) 1144
Kzo9I GATC 4 cut(s) 295, 369, 646, 1144
LmnI GCTCC 1 cut(s) 559
Lsp1109I GCAGC 7 cut(s) 436, 439, 501, 504, 650, 679, 682
LweI GCATC 2 cut(s) 675, 1217
MabI ACCWGGT 2 cut(s) 478, 796
MaeI CTAG 5 cut(s) 276, 420, 749, 863, 1247
MaeIII GTNAC 2 cut(s) 956, 994
MalI GATC 4 cut(s) 297, 371, 648, 1146
MboI GATC 4 cut(s) 295, 369, 646, 1144
MboII GAAGA 4 cut(s) 124, 581, 737, 1124
MfeI CAATTG 1 cut(s) 972
MhlI GDGCHC 1 cut(s) 143
MlsI TGGCCA 1 cut(s) 964
MluCI AATT 9 cut(s) 574, 676, 729, 950, 972, 1021, 1057, 1156, 1241
MluNI TGGCCA 1 cut(s) 964
MlyI GAGTC 2 cut(s) 1244, 1258
MmeI TCCRAC 1 cut(s) 248
MnlI CCTC 8 cut(s) 159, 285, 427, 597, 612, 903, 1087, 1249
Mox20I TGGCCA 1 cut(s) 964
MroI TCCGGA 1 cut(s) 425
MroXI GAANNNNTTC 3 cut(s) 149, 729, 927
MscI TGGCCA 1 cut(s) 964
MseI TTAA 7 cut(s) 173, 258, 510, 822, 855, 981, 1056
Msp20I TGGCCA 1 cut(s) 964
MspA1I CMGCKG 1 cut(s) 919
MspI CCGG 5 cut(s) 228, 373, 426, 557, 932
MspR9I CCNGG 5 cut(s) 374, 480, 651, 798, 933
MunI CAATTG 1 cut(s) 972
MvaI CCWGG 3 cut(s) 480, 651, 798
MwoI GCNNNNNNNGC 4 cut(s) 449, 492, 889, 898
NciI CCSGG 2 cut(s) 374, 933
NdeI CATATG 1 cut(s) 550
NdeII GATC 4 cut(s) 295, 369, 646, 1144
NlaIII CATG 7 cut(s) 26, 532, 638, 741, 785, 833, 1167
NspI RCATGY 1 cut(s) 741
PaeI GCATGC 1 cut(s) 741
PagI TCATGA 2 cut(s) 634, 781
PcsI WCGNNNNNNNCGW 1 cut(s) 365
PdmI GAANNNNTTC 3 cut(s) 149, 729, 927
PfeI GAWTC 6 cut(s) 11, 344, 437, 460, 532, 703
PkrI GCNGC 8 cut(s) 451, 454, 488, 491, 494, 665, 694, 697
PleI GAGTC 2 cut(s) 1243, 1258
PpsI GAGTC 2 cut(s) 1243, 1258
PshBI ATTAAT 1 cut(s) 510
PsiI TTATAA 1 cut(s) 1065
Psp6I CCWGG 3 cut(s) 478, 649, 796
PspGI CCWGG 3 cut(s) 478, 649, 796
PstNI CAGNNNCTG 1 cut(s) 960
PvuII CAGCTG 1 cut(s) 919
RsaI GTAC 5 cut(s) 38, 248, 364, 394, 655
RsaNI GTAC 5 cut(s) 37, 247, 363, 393, 654
SaqAI TTAA 7 cut(s) 173, 258, 510, 822, 855, 981, 1056
SatI GCNGC 8 cut(s) 450, 453, 487, 490, 493, 664, 693, 696
Sau3AI GATC 4 cut(s) 295, 369, 646, 1144
ScaI AGTACT 1 cut(s) 394
SchI GAGTC 2 cut(s) 1244, 1258
ScrFI CCNGG 5 cut(s) 374, 480, 651, 798, 933
SduI GDGCHC 1 cut(s) 143
SexAI ACCWGGT 2 cut(s) 478, 796
SfaNI GCATC 2 cut(s) 675, 1217
SfcI CTRYAG 1 cut(s) 1074
SphI GCATGC 1 cut(s) 741
Sse9I AATT 9 cut(s) 574, 676, 729, 950, 972, 1021, 1057, 1156, 1241
SsiI CCGC 2 cut(s) 486, 804
SspI AATATT 2 cut(s) 149, 1012
SspMI CTAG 5 cut(s) 276, 420, 749, 863, 1247
StyD4I CCNGG 5 cut(s) 372, 478, 649, 796, 931
TaaI ACNGT 1 cut(s) 791
TaqI TCGA 4 cut(s) 368, 610, 627, 1069
TasI AATT 9 cut(s) 574, 676, 729, 950, 972, 1021, 1057, 1156, 1241
TatI WGTACW 2 cut(s) 246, 392
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 6 cut(s) 11, 344, 437, 460, 532, 703
Tru1I TTAA 7 cut(s) 173, 258, 510, 822, 855, 981, 1056
Tru9I TTAA 7 cut(s) 173, 258, 510, 822, 855, 981, 1056
TscAI CASTG 1 cut(s) 778
TseI GCWGC 7 cut(s) 449, 452, 489, 492, 663, 692, 695
TspDTI ATGAA 5 cut(s) 131, 450, 651, 801, 1095
TspRI CASTG 1 cut(s) 778
VspI ATTAAT 1 cut(s) 510
XapI RAATTY 3 cut(s) 574, 729, 950
XbaI TCTAGA 2 cut(s) 748, 1246
XceI RCATGY 1 cut(s) 741
XmnI GAANNNNTTC 3 cut(s) 149, 729, 927
XspI CTAG 5 cut(s) 276, 420, 749, 863, 1247
ZrmI AGTACT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.