Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007939

Physical Location & Seq

Genomic Coordinates Forward (+)

13711936 .. 13717695

Gene Structure 5760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g13150.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3039 bp

ATGCTGTCAACCCTAGATCGATCCAATGGGAATTTAGAAGATGCTTTACAGAGTGAGCTTGAATTGATTCTGAGAGAGCAGCGCAATCAGCATGCCATTCACCGGGAGAGGGACGTGAATATGTATAGGAGCGGCAGTGCCCCGCCAACTGTTGAGGGTTCGCTAACTGCTGTGGGTAGTCTCTTTAGGAACTCAGATTTTAGGGATGTGACTAGTAGGATTAGTAATAACAATGGGGTTTTGTCCGAAGATGAGATTCGATCTCATCCTGCTTATCTTTCGTACTACTATTCGCATGATAATATTAACCCAAGATTGCCTCCACCGTTGTTGTCGAGAGAGGATTGGCGTGTTGCACAAAGGTTTCAGGGTGGCGGGTCTTCTTTTGAGGGCAATGGGGACTGGAGGAGGAAGAAGTTGGCTGATGATGGTGATAGTTTGTCGCTGTTTTCCACGCAGTTGGGACTACAAAAGGCAGAGGATGAGTTGATGGGACTGAGGAATGCTAAAGGTAGCAATCTCCGTAAACAGACTTCATCTGAGTGGCTTGATAAAAGCACGGATGGTTTGATTGGTTTGTCGACAACTGGGTTTGGTGGAAGGAGAAAGAGTTTTGCTGACATTTTACAGGAAGGACTTGATGAAACTGCATCCTTGTCAGGTCCCCTGTCAAGGCCATCAAGTCGTAACGCTTTTGGTGATTTCATGGATTCCACAGGCATGGCTGATCCCTATCCAGTTGGGTTAACTAATGGAGTGGAGTCTGCAGAGGGTATGCATAATGGACCAGCTTCACGTGGCCTGGTGGGAGTTCAGAGCCATGGCCTAACAACTTCTCATTCCTTTGCATCTGCTGTGGGTCCTTCTTTGCCAAGAAGCAGAACCCCTGAACAACTATTTGGGAGGTCCACCGGTTCTGGTCTCCGCCCTGTAGGGAGTAGAGTATTCCCTACCGAGAGGAAGAATGTTGTTAGTCCAGATATTCAAAATGATCGATCTTCCAGCATGAATGATCTGGCGGATATTTCAGCCAATTTTTCTGGCTTAAGCCTATCAAAAATTAGACCTGTAGATGATGATAGACGTATTCAGTCGCAGCTTCATGTGGATCTTGATAATCAGCGTGATTTTCTGTTTAAGATGCCAAATGGGCATCAGAGGCTGCAGCAGGAACTGTTAGAGAAGGCAAATGCTGAAATTTTTTCTCTTCCTACTAATTATGCTCATCTAGCAAAGAAAAATGGAATCATAACAAACCGTACTACATCCAATGGGCAAGCTAATTTTTCAAGAAGAACTTCTTCTCCCAGTCTGTACTCAAAAGGGAGTTCTTCAGGCTTTGGAGCTTTGGAAGGATCTAATGTTCATTACCAAGAAGCAAATCCAGCAGGTATGGACTTTGATGGCCATGTTGCCGGGGCCTATCCTGTAAATCCAAAGTTGAACATGACAAGTGATAATCATCTTGGTGCAGTAGCTAGTGGTGATGAACAAAGTCTGAACAGACTGGGAAACAAAGTAGGGCCTGGTCTTCATTCTTCTGTTATGGACCCATCTTATATTCAGTTTTTGCAAAGAACTGATTACGCAGCACTTAATGTAACTAGTCCAAGTGGTTATCCTCTGAGCAAAAACCACTTTGGCACTTTGCATGGAGACTTAGAGGGGCTTCAGAAGGCATATCTTGAGGCATTGCTTGCTCAAAGGAAGCAACAGTATGAGTTGTCAGTTTTAGGTAACTCTGACGGTTTTAATCATGGATATTATGGGAACCCACCATATGGGCTTGGCATGTATCCAGGAAATCCAATGGCAAATTCACTTCATCCTTCTATTGGGTATGGTAGTCCAATGTTTGAGAGTGAGAAGATTGCCCACTTTAATTCTATGTTGAGAAGTTCAATGGGAGGGTCGGTTAGCTCCTGGAACTCAGATATTGGAAACAACCTAGAAGGACGACATGCATCATCATTATTAGATGAATTCAAGAACAATAAGAACAAATCTTTTGAATTTGCAGACATTGTTGATCACGTAATTGAATTCAGTACCGACCAGTATGGAAGTCGCTTCATTCAGCAGAAACTAGAAACAGCCACTGTGGAAGAAAAAATGAATATATTTCCAGAGATTATTCCTCATGCTCGCGCGTTGATGACTGATGTATTCGGAAATTATGTCGTACAGAAATTTTTTGAGCATGGTACAGAAAGCCAAAGAAAAGAGTTAACCAGCCAACTTACTGGCCATGTTTTGCCTCTCAGTCTTCAAATGTATGGTTGTAGAGTGATTCAGAAGGCCTTGGAAGTGGTTGATGTGAATCAGCAGGCACAGATGGTGTTGGAGCTTGATGGTTCAATCATGAAATGCGTCCGTGATCAGAATGGGAATCATGTCATTCAGAAGTGTATAGAATGTATCCCTCAAGATAAAATTCAATTTATAATTTCATCCTTCTATGGGCAAGTTGTCACACTATCCACTCATCCTTATGGATGCCGTGTTATACAGAGGGTTCTGGAACATTGCAATGATTCAAACACACAACAAATAATCATGGATGAAATCATGCAATCTGTATGCATTTTGGCACAATCGGAGATCGATCAATATGGAAATTACGTCATTCAGCATGTCCTTGAACATGGTAAACCGCACGAACGGACTGCAATTATCCACAAGCTTGCAGGACAAATTGTGAAGATGAGTCAGCAGAAGTTTGCTTCTAATGTTGTGGAGAAGTGCTTAACTTTTGGGAATGCTGATGAGCGCCAGTTTTTGGTGAATGAGATGCTGGGTTCAACTGATGAAAATGAGCCCTTACAGGCCATGATGAAAGATCCCTTTGGAAACTACGTTGTGCAGAAGGTTCTTGAGACTTGTGATGATCAGAGTCTTGAGTTGATTCTTTCTCGCATTAAGGTTCATTTGACTGCCCTGAAGAAGTATACCTACGGCAAACATATCGTTTCTCGTGTCGAGAAACTCATCACAACTGGAGAAAGGCGCATAGGGTTGTCAGCCTCGTGTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NABP PUF

Protein Analysis

1013

Amino Acids

111.89

Weight (kDa)

6.14

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10360
fragaria_vesca	FvH4_7g18910 FvH4_7g18910
malus_domestica	MD01G1104900.v1.1 MD07G1171400.v1.1
prunus_persica	Prupe.2G210200_v2.0.a1
pyrus_communis	pycom01g13150 pycom01g15780 pycom07g16530 pycom07g16540 pycom07g16560
rosa_chinensis	RchiOBHm_Chr1g0362841
rosa_laevigata	RLG00000027618
rosa_multiflora	Rmu_sc0001502.1_g000016
rosa_roxburghii	Rroxscaffold_4G00293720
rosa_rugosa	Rorug01G0301800 Rorug01G0301800 Rorug01G0301800 Rorug01G0301900
rosa_samantha	Rh1AG310700 Rh1BG273800 Rh1CG291000 Rh1DG304600
rosa_wichuraiana	Rw1G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2444
Acc36I	ACCTGC	1 cut(s)	1379
AccB7I	CCANNNNNTGG	2 cut(s)	1781, 2779
AccBSI	CCGCTC	1 cut(s)	132
AccI	GTMKAC	2 cut(s)	581, 2948
AccII	CGCG	2 cut(s)	2148, 2150
AciI	CCGC	6 cut(s)	132, 143, 375, 925, 1019, 2654
AclWI	GGATC	5 cut(s)	15, 722, 1116, 1363, 2834
AcoI	YGGCCR	2 cut(s)	1405, 2245
AcsI	RAATTY	8 cut(s)	31, 1197, 1816, 1982, 2012, 2042, 2189, 2433
AcuI	CTGAAG	3 cut(s)	1317, 1655, 2960
AcvI	CACGTG	1 cut(s)	797
AfaI	GTAC	6 cut(s)	284, 1261, 1316, 2050, 2184, 2206
AfiI	CCNNNNNNNGG	7 cut(s)	102, 109, 672, 1781, 1835, 2460, 2779
AflII	CTTAAG	1 cut(s)	1045
AgeI	ACCGGT	1 cut(s)	911
AhlI	ACTAGT	2 cut(s)	212, 1604
AjiI	CACGTC	1 cut(s)	115
AjnI	CCWGG	4 cut(s)	801, 1525, 1798, 1922
AjuI	GAANNNNNNNTTGG	4 cut(s)	882, 914, 1801, 1833
AloI	GAACNNNNNNTCC	4 cut(s)	1288, 1320, 1347, 1379
AluBI	AGCT	9 cut(s)	58, 791, 1099, 1280, 1346, 1478, 1920, 2347, 2683
AluI	AGCT	9 cut(s)	58, 791, 1099, 1280, 1346, 1478, 1920, 2347, 2683
Alw26I	GTCTC	4 cut(s)	185, 926, 1650, 2870
AlwI	GGATC	5 cut(s)	15, 722, 1116, 1363, 2834
AlwNI	CAGNNNCTG	3 cut(s)	1162, 1174, 2099
AoxI	GGCC	9 cut(s)	674, 799, 823, 1405, 1419, 1523, 2245, 2298, 2826
ApeKI	GCWGC	5 cut(s)	79, 1096, 1162, 1165, 1589
ApoI	RAATTY	8 cut(s)	31, 1197, 1816, 1982, 2012, 2042, 2189, 2433
AsiGI	ACCGGT	1 cut(s)	911
Asp700I	GAANNNNTTC	3 cut(s)	66, 1297, 1300
AspLEI	GCGC	4 cut(s)	84, 2150, 2772, 3009
AspS9I	GGNCC	7 cut(s)	662, 785, 860, 906, 1419, 1523, 1549
AsuC2I	CCSGG	2 cut(s)	104, 1417
AsuHPI	GGTGA	5 cut(s)	92, 443, 710, 1496, 2794
AvaII	GGWCC	5 cut(s)	662, 785, 860, 906, 1549
BaeGI	GKGCMC	1 cut(s)	142
BalI	TGGCCA	2 cut(s)	1407, 2247
BanII	GRGCYC	1 cut(s)	2820
BarI	GAAGNNNNNNTAC	6 cut(s)	30, 62, 517, 549, 2936, 2968
BauI	CACGAG	2 cut(s)	2973, 3025
BbrPI	CACGTG	1 cut(s)	797
BbsI	GAAGAC	3 cut(s)	372, 1523, 2258
BbvI	GCAGC	5 cut(s)	91, 1108, 1149, 1177, 1601
BccI	CCATC	8 cut(s)	422, 484, 557, 685, 1397, 1561, 2329, 2345
BceAI	ACGGC	2 cut(s)	2484, 2971
BcgI	CGANNNNNNTGC	4 cut(s)	2648, 2682, 2947, 2981
BciT130I	CCWGG	4 cut(s)	803, 1527, 1800, 1924
BciVI	GTATCC	2 cut(s)	1806, 2429
BclI	TGATCA	3 cut(s)	2029, 2377, 2887
BcnI	CCSGG	2 cut(s)	104, 1417
BcoDI	GTCTC	4 cut(s)	185, 926, 1650, 2870
BcuI	ACTAGT	2 cut(s)	212, 1604
BfaI	CTAG	7 cut(s)	14, 213, 1229, 1479, 1605, 1949, 2087
BfmI	CTRYAG	4 cut(s)	765, 930, 1068, 1163
BfoI	RGCGCY	1 cut(s)	2773
BfrI	CTTAAG	1 cut(s)	1045
BfuAI	ACCTGC	1 cut(s)	1379
BfuI	GTATCC	2 cut(s)	1806, 2429
BglI	GCCNNNNNGGC	1 cut(s)	1150
BisI	GCNGC	6 cut(s)	80, 133, 1097, 1163, 1166, 1590
BlsI	GCNGC	6 cut(s)	81, 134, 1098, 1164, 1167, 1591
Bme1390I	CCNGG	6 cut(s)	104, 803, 1417, 1527, 1800, 1924
Bme18I	GGWCC	5 cut(s)	662, 785, 860, 906, 1549
BmgBI	CACGTC	1 cut(s)	115
BmgT120I	GGNCC	7 cut(s)	662, 785, 860, 906, 1419, 1523, 1549
BmiI	GGNNCC	5 cut(s)	664, 861, 1420, 1551, 1772
BmrFI	CCNGG	6 cut(s)	104, 803, 1417, 1527, 1800, 1924
BmrI	ACTGGG	3 cut(s)	597, 1302, 1517
BmsI	GCATC	8 cut(s)	31, 659, 857, 1131, 1162, 1973, 2486, 2781
BmuI	ACTGGG	3 cut(s)	597, 1302, 1517
BpiI	GAAGAC	3 cut(s)	372, 1523, 2258
BpmI	CTGGAG	2 cut(s)	424, 3018
BpuEI	CTTGAG	4 cut(s)	1706, 2409, 2894, 2918
BpuMI	CCSGG	2 cut(s)	104, 1417
Bsa29I	ATCGAT	3 cut(s)	19, 994, 2604
BsaAI	YACGTR	2 cut(s)	797, 2035
BsaBI	GATNNNNATC	3 cut(s)	732, 1461, 2319
BsaI	GGTCTC	1 cut(s)	926
BsaJI	CCNNGG	3 cut(s)	820, 1416, 2301
BsaWI	WCCGGW	1 cut(s)	911
BsaXI	ACNNNNNCTCC	8 cut(s)	121, 151, 595, 625, 1288, 1318, 1899, 1929
Bsc4I	CCNNNNNNNGG	7 cut(s)	102, 109, 672, 1781, 1835, 2460, 2779
Bse118I	RCCGGY	1 cut(s)	911
Bse1I	ACTGG	9 cut(s)	407, 592, 737, 1308, 1512, 2056, 2248, 2773, 3001
Bse3DI	GCAATG	4 cut(s)	400, 1691, 2524, 2536
Bse8I	GATNNNNATC	3 cut(s)	732, 1461, 2319
BseBI	CCWGG	4 cut(s)	803, 1527, 1800, 1924
BseCI	ATCGAT	3 cut(s)	19, 994, 2604
BseDI	CCNNGG	3 cut(s)	820, 1416, 2301
BseJI	GATNNNNATC	3 cut(s)	732, 1461, 2319
BseLI	CCNNNNNNNGG	7 cut(s)	102, 109, 672, 1781, 1835, 2460, 2779
BseMI	GCAATG	4 cut(s)	400, 1691, 2524, 2536
BseMII	CTCAG	7 cut(s)	62, 207, 488, 531, 1616, 1944, 2275
BseNI	ACTGG	9 cut(s)	407, 592, 737, 1308, 1512, 2056, 2248, 2773, 3001
BseRI	GAGGAG	1 cut(s)	421
BseSI	GKGCMC	1 cut(s)	142
BseXI	GCAGC	5 cut(s)	91, 1108, 1149, 1177, 1601
BseYI	CCCAGC	1 cut(s)	2794
BsgI	GTGCAG	2 cut(s)	1491, 2882
Bsh1236I	CGCG	2 cut(s)	2148, 2150
BshFI	GGCC	9 cut(s)	676, 801, 825, 1407, 1421, 1525, 2247, 2300, 2828
BshTI	ACCGGT	1 cut(s)	911
BshVI	ATCGAT	3 cut(s)	19, 994, 2604
BsiSI	CCGG	3 cut(s)	103, 912, 1416
BslFI	GGGAC	5 cut(s)	125, 413, 477, 507, 648
BslI	CCNNNNNNNGG	7 cut(s)	102, 109, 672, 1781, 1835, 2460, 2779
BsmAI	GTCTC	4 cut(s)	185, 926, 1650, 2870
BsmFI	GGGAC	5 cut(s)	125, 413, 477, 507, 648
BsmI	GAATGC	2 cut(s)	508, 2764
BsnI	GGCC	9 cut(s)	676, 801, 825, 1407, 1421, 1525, 2247, 2300, 2828
Bso31I	GGTCTC	1 cut(s)	926
Bsp1286I	GDGCHC	2 cut(s)	142, 2820
Bsp19I	CCATGG	1 cut(s)	820
BspACI	CCGC	6 cut(s)	132, 143, 375, 925, 1019, 2654
BspANI	GGCC	9 cut(s)	676, 801, 825, 1407, 1421, 1525, 2247, 2300, 2828
BspCNI	CTCAG	7 cut(s)	63, 206, 489, 532, 1617, 1943, 2274
BspDI	ATCGAT	3 cut(s)	19, 994, 2604
BspFNI	CGCG	2 cut(s)	2148, 2150
BspHI	TCATGA	1 cut(s)	2361
BspLI	GGNNCC	5 cut(s)	664, 861, 1420, 1551, 1772
BspMAI	CTGCAG	2 cut(s)	769, 1167
BspMI	ACCTGC	1 cut(s)	1379
BspPI	GGATC	5 cut(s)	15, 722, 1116, 1363, 2834
BspTI	CTTAAG	1 cut(s)	1045
BspTNI	GGTCTC	1 cut(s)	926
BsrBI	CCGCTC	1 cut(s)	132
BsrDI	GCAATG	4 cut(s)	400, 1691, 2524, 2536
BsrFI	RCCGGY	1 cut(s)	911
BsrI	ACTGG	9 cut(s)	407, 592, 737, 1308, 1512, 2056, 2248, 2773, 3001
BssAI	RCCGGY	1 cut(s)	911
BssECI	CCNNGG	3 cut(s)	820, 1416, 2301
BssNAI	GTATAC	1 cut(s)	2949
BssSI	CACGAG	2 cut(s)	2973, 3025
BssT1I	CCWWGG	2 cut(s)	820, 2301
Bst1107I	GTATAC	1 cut(s)	2949
Bst2BI	CACGAG	2 cut(s)	2973, 3025
Bst2UI	CCWGG	4 cut(s)	803, 1527, 1800, 1924
Bst4CI	ACNGT	7 cut(s)	151, 327, 1176, 1259, 1716, 1748, 2101
Bst6I	CTCTTC	1 cut(s)	1212
BstAFI	CTTAAG	1 cut(s)	1045
BstAPI	GCANNNNNTGC	1 cut(s)	1697
BstBAI	YACGTR	2 cut(s)	797, 2035
BstC8I	GCNNGC	6 cut(s)	93, 1278, 1698, 2146, 2328, 2685
BstDEI	CTNAG	8 cut(s)	71, 193, 497, 540, 1625, 1660, 1930, 2261
BstDSI	CCRYGG	1 cut(s)	820
BstFNI	CGCG	2 cut(s)	2148, 2150
BstH2I	RGCGCY	1 cut(s)	2773
BstHHI	GCGC	4 cut(s)	84, 2150, 2772, 3009
BstMAI	GTCTC	4 cut(s)	185, 926, 1650, 2870
BstMWI	GCNNNNNNNGC	6 cut(s)	88, 1150, 1159, 1229, 1385, 1697
BstNI	CCWGG	4 cut(s)	803, 1527, 1800, 1924
BstNSI	RCATGY	4 cut(s)	95, 1795, 1964, 2636
BstSCI	CCNGG	6 cut(s)	102, 801, 1415, 1525, 1798, 1922
BstSFI	CTRYAG	4 cut(s)	765, 930, 1068, 1163
BstSLI	GKGCMC	1 cut(s)	142
BstUI	CGCG	2 cut(s)	2148, 2150
BstV1I	GCAGC	5 cut(s)	91, 1108, 1149, 1177, 1601
BstV2I	GAAGAC	3 cut(s)	372, 1523, 2258
BstX2I	RGATCY	3 cut(s)	1108, 1355, 2839
BstXI	CCANNNNNNTGG	3 cut(s)	460, 721, 2243
BstYI	RGATCY	3 cut(s)	1108, 1355, 2839
BstZ17I	GTATAC	1 cut(s)	2949
Bsu15I	ATCGAT	3 cut(s)	19, 994, 2604
BsuI	GTATCC	2 cut(s)	1806, 2429
BsuRI	GGCC	9 cut(s)	676, 801, 825, 1407, 1421, 1525, 2247, 2300, 2828
BsuTUI	ATCGAT	3 cut(s)	19, 994, 2604
BtgI	CCRYGG	1 cut(s)	820
BtrI	CACGTC	1 cut(s)	115
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	2 cut(s)	142, 2097
BveI	ACCTGC	1 cut(s)	1379
Cac8I	GCNNGC	6 cut(s)	93, 1278, 1698, 2146, 2328, 2685
CaiI	CAGNNNCTG	3 cut(s)	1162, 1174, 2099
CciI	TCATGA	1 cut(s)	2361
CfoI	GCGC	4 cut(s)	84, 2150, 2772, 3009
Cfr10I	RCCGGY	1 cut(s)	911
Cfr13I	GGNCC	7 cut(s)	662, 785, 860, 906, 1419, 1523, 1549
ClaI	ATCGAT	3 cut(s)	19, 994, 2604
CseI	GACGC	1 cut(s)	2359
Csp6I	GTAC	6 cut(s)	283, 1260, 1315, 2049, 2183, 2205
CspAI	ACCGGT	1 cut(s)	911
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviQI	GTAC	6 cut(s)	283, 1260, 1315, 2049, 2183, 2205
DdeI	CTNAG	8 cut(s)	71, 193, 497, 540, 1625, 1660, 1930, 2261
EaeI	YGGCCR	2 cut(s)	1405, 2245
Eam1104I	CTCTTC	1 cut(s)	1212
EarI	CTCTTC	1 cut(s)	1212
EciI	GGCGGA	2 cut(s)	914, 1034
Eco130I	CCWWGG	2 cut(s)	820, 2301
Eco147I	AGGCCT	1 cut(s)	2300
Eco24I	GRGCYC	1 cut(s)	2820
Eco31I	GGTCTC	1 cut(s)	926
Eco47I	GGWCC	5 cut(s)	662, 785, 860, 906, 1549
Eco57I	CTGAAG	3 cut(s)	1317, 1655, 2960
Eco72I	CACGTG	1 cut(s)	797
EcoO109I	RGGNCCY	4 cut(s)	662, 860, 1419, 1523
EcoRI	GAATTC	2 cut(s)	1982, 2042
EcoRII	CCWGG	4 cut(s)	801, 1525, 1798, 1922
EcoT14I	CCWWGG	2 cut(s)	820, 2301
EcoT22I	ATGCAT	3 cut(s)	780, 1966, 2585
EcoT38I	GRGCYC	1 cut(s)	2820
ErhI	CCWWGG	2 cut(s)	820, 2301
FalI	AAGNNNNNCTT	4 cut(s)	1282, 1314, 1285, 1317
FaqI	GGGAC	5 cut(s)	125, 413, 477, 507, 648
FauI	CCCGC	2 cut(s)	150, 368
FauNDI	CATATG	1 cut(s)	1780
FbaI	TGATCA	3 cut(s)	2029, 2377, 2887
FblI	GTMKAC	2 cut(s)	581, 2948
Fnu4HI	GCNGC	6 cut(s)	80, 133, 1097, 1163, 1166, 1590
FriOI	GRGCYC	1 cut(s)	2820
Fsp4HI	GCNGC	6 cut(s)	80, 133, 1097, 1163, 1166, 1590
FspBI	CTAG	7 cut(s)	14, 213, 1229, 1479, 1605, 1949, 2087
GlaI	GCGC	4 cut(s)	83, 2149, 2771, 3008
GluI	GCNGC	6 cut(s)	80, 133, 1097, 1163, 1166, 1590
GsaI	CCCAGC	1 cut(s)	2798
GsuI	CTGGAG	2 cut(s)	424, 3018
HaeII	RGCGCY	1 cut(s)	2773
HaeIII	GGCC	9 cut(s)	676, 801, 825, 1407, 1421, 1525, 2247, 2300, 2828
HapII	CCGG	3 cut(s)	103, 912, 1416
HgaI	GACGC	1 cut(s)	2359
HhaI	GCGC	4 cut(s)	84, 2150, 2772, 3009
Hin6I	GCGC	4 cut(s)	82, 2148, 2770, 3007
HinP1I	GCGC	4 cut(s)	82, 2148, 2770, 3007
HincII	GTYRAC	4 cut(s)	9, 582, 747, 2229
HindII	GTYRAC	4 cut(s)	9, 582, 747, 2229
HindIII	AAGCTT	1 cut(s)	2681
HpaI	GTTAAC	2 cut(s)	747, 2229
HpaII	CCGG	3 cut(s)	103, 912, 1416
HphI	GGTGA	5 cut(s)	92, 443, 710, 1496, 2794
Hpy166II	GTNNAC	8 cut(s)	9, 527, 582, 747, 909, 2229, 2651, 2949
Hpy8I	GTNNAC	8 cut(s)	9, 527, 582, 747, 909, 2229, 2651, 2949
HpyCH4III	ACNGT	7 cut(s)	151, 327, 1176, 1259, 1716, 1748, 2101
HpyCH4IV	ACGT	6 cut(s)	114, 796, 1084, 2034, 2622, 2856
HpyF10VI	GCNNNNNNNGC	6 cut(s)	88, 1150, 1159, 1229, 1385, 1697
HpyF3I	CTNAG	8 cut(s)	71, 193, 497, 540, 1625, 1660, 1930, 2261
HpySE526I	ACGT	6 cut(s)	114, 796, 1084, 2034, 2622, 2856
HspAI	GCGC	4 cut(s)	82, 2148, 2770, 3007
Ksp22I	TGATCA	3 cut(s)	2029, 2377, 2887
KspAI	GTTAAC	2 cut(s)	747, 2229
LmnI	GCTCC	4 cut(s)	129, 1343, 1925, 2344
Lsp1109I	GCAGC	5 cut(s)	91, 1108, 1149, 1177, 1601
LweI	GCATC	8 cut(s)	31, 659, 857, 1131, 1162, 1973, 2486, 2781
MaeI	CTAG	7 cut(s)	14, 213, 1229, 1479, 1605, 1949, 2087
MaeII	ACGT	6 cut(s)	114, 796, 1084, 2034, 2622, 2856
MaeIII	GTNAC	5 cut(s)	208, 686, 1600, 1736, 2470
MbiI	CCGCTC	1 cut(s)	132
MflI	RGATCY	3 cut(s)	1108, 1355, 2839
MhlI	GDGCHC	2 cut(s)	142, 2820
MlsI	TGGCCA	2 cut(s)	1407, 2247
MluNI	TGGCCA	2 cut(s)	1407, 2247
MlyI	GAGTC	3 cut(s)	770, 2716, 2902
MmeI	TCCRAC	1 cut(s)	2322
Mox20I	TGGCCA	2 cut(s)	1407, 2247
Mph1103I	ATGCAT	3 cut(s)	780, 1966, 2585
MroXI	GAANNNNTTC	3 cut(s)	66, 1297, 1300
MscI	TGGCCA	2 cut(s)	1407, 2247
MslI	CAYNNNNRTG	5 cut(s)	541, 719, 1467, 2490, 2529
Msp20I	TGGCCA	2 cut(s)	1407, 2247
MspCI	CTTAAG	1 cut(s)	1045
MspI	CCGG	3 cut(s)	103, 912, 1416
MspR9I	CCNGG	6 cut(s)	104, 803, 1417, 1527, 1800, 1924
Mva1269I	GAATGC	2 cut(s)	508, 2764
MvaI	CCWGG	4 cut(s)	803, 1527, 1800, 1924
MvnI	CGCG	2 cut(s)	2148, 2150
MwoI	GCNNNNNNNGC	6 cut(s)	88, 1150, 1159, 1229, 1385, 1697
NciI	CCSGG	2 cut(s)	104, 1417
NcoI	CCATGG	1 cut(s)	820
NdeI	CATATG	1 cut(s)	1780
NlaIV	GGNNCC	5 cut(s)	664, 861, 1420, 1551, 1772
NmuCI	GTSAC	2 cut(s)	208, 2470
NsiI	ATGCAT	3 cut(s)	780, 1966, 2585
NspI	RCATGY	4 cut(s)	95, 1795, 1964, 2636
PaeI	GCATGC	1 cut(s)	95
PagI	TCATGA	1 cut(s)	2361
PceI	AGGCCT	1 cut(s)	2300
PctI	GAATGC	2 cut(s)	508, 2764
PdmI	GAANNNNTTC	3 cut(s)	66, 1297, 1300
PfeI	GAWTC	9 cut(s)	67, 256, 710, 1245, 2290, 2320, 2389, 2534, 2905
PflMI	CCANNNNNTGG	2 cut(s)	1781, 2779
PfoI	TCCNGGA	2 cut(s)	1798, 1922
PinAI	ACCGGT	1 cut(s)	911
PkrI	GCNGC	6 cut(s)	81, 134, 1098, 1164, 1167, 1591
PleI	GAGTC	3 cut(s)	769, 2715, 2901
PmaCI	CACGTG	1 cut(s)	797
PmlI	CACGTG	1 cut(s)	797
PpsI	GAGTC	3 cut(s)	769, 2715, 2901
Ppu21I	YACGTR	2 cut(s)	797, 2035
PpuMI	RGGWCCY	2 cut(s)	662, 860
PsiI	TTATAA	1 cut(s)	2444
Psp5II	RGGWCCY	2 cut(s)	662, 860
Psp6I	CCWGG	4 cut(s)	801, 1525, 1798, 1922
PspCI	CACGTG	1 cut(s)	797
PspFI	CCCAGC	1 cut(s)	2794
PspGI	CCWGG	4 cut(s)	801, 1525, 1798, 1922
PspN4I	GGNNCC	5 cut(s)	664, 861, 1420, 1551, 1772
PspPI	GGNCC	7 cut(s)	662, 785, 860, 906, 1419, 1523, 1549
PspPPI	RGGWCCY	2 cut(s)	662, 860
PstI	CTGCAG	2 cut(s)	769, 1167
PstNI	CAGNNNCTG	3 cut(s)	1162, 1174, 2099
PsuI	RGATCY	3 cut(s)	1108, 1355, 2839
RsaI	GTAC	6 cut(s)	284, 1261, 1316, 2050, 2184, 2206
RsaNI	GTAC	6 cut(s)	283, 1260, 1315, 2049, 2183, 2205
RseI	CAYNNNNRTG	5 cut(s)	541, 719, 1467, 2490, 2529
SalI	GTCGAC	1 cut(s)	580
SatI	GCNGC	6 cut(s)	80, 133, 1097, 1163, 1166, 1590
Sau96I	GGNCC	7 cut(s)	662, 785, 860, 906, 1419, 1523, 1549
SchI	GAGTC	3 cut(s)	770, 2716, 2902
ScrFI	CCNGG	6 cut(s)	104, 803, 1417, 1527, 1800, 1924
SduI	GDGCHC	2 cut(s)	142, 2820
SfaNI	GCATC	8 cut(s)	31, 659, 857, 1131, 1162, 1973, 2486, 2781
SfcI	CTRYAG	4 cut(s)	765, 930, 1068, 1163
SinI	GGWCC	5 cut(s)	662, 785, 860, 906, 1549
SmiMI	CAYNNNNRTG	5 cut(s)	541, 719, 1467, 2490, 2529
SmlI	CTYRAG	5 cut(s)	1045, 1685, 2424, 2873, 2897
SmoI	CTYRAG	5 cut(s)	1045, 1685, 2424, 2873, 2897
SpeI	ACTAGT	2 cut(s)	212, 1604
SphI	GCATGC	1 cut(s)	95
SseBI	AGGCCT	1 cut(s)	2300
SsiI	CCGC	6 cut(s)	132, 143, 375, 925, 1019, 2654
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	7 cut(s)	14, 213, 1229, 1479, 1605, 1949, 2087
StuI	AGGCCT	1 cut(s)	2300
StyD4I	CCNGG	6 cut(s)	102, 801, 1415, 1525, 1798, 1922
StyI	CCWWGG	2 cut(s)	820, 2301
TaaI	ACNGT	7 cut(s)	151, 327, 1176, 1259, 1716, 1748, 2101
TaiI	ACGT	6 cut(s)	117, 799, 1087, 2037, 2625, 2859
TaqI	TCGA	7 cut(s)	19, 259, 335, 581, 994, 2604, 2979
TatI	WGTACW	1 cut(s)	1314
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	9 cut(s)	67, 256, 710, 1245, 2290, 2320, 2389, 2534, 2905
TscAI	CASTG	2 cut(s)	142, 2104
TseFI	GTSAC	2 cut(s)	208, 2470
TseI	GCWGC	5 cut(s)	79, 1096, 1162, 1165, 1589
Tsp45I	GTSAC	2 cut(s)	208, 2470
TspGWI	ACGGA	4 cut(s)	512, 575, 2363, 2677
TspRI	CASTG	2 cut(s)	142, 2104
Van91I	CCANNNNNTGG	2 cut(s)	1781, 2779
Vha464I	CTTAAG	1 cut(s)	1045
VpaK11BI	GGWCC	5 cut(s)	662, 785, 860, 906, 1549
XapI	RAATTY	8 cut(s)	31, 1197, 1816, 1982, 2012, 2042, 2189, 2433
XceI	RCATGY	4 cut(s)	95, 1795, 1964, 2636
XmiI	GTMKAC	2 cut(s)	581, 2948
XmnI	GAANNNNTTC	3 cut(s)	66, 1297, 1300
XspI	CTAG	7 cut(s)	14, 213, 1229, 1479, 1605, 1949, 2087
Zsp2I	ATGCAT	3 cut(s)	780, 1966, 2585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.