Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0007939

Physical Location & Seq

Genomic Coordinates Forward (+)

41040134 .. 41046646

Gene Structure 6513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG273800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2331 bp

ATGGCTAGTGGGGGAAAGATAGATATGCTATCAACGCTAGATAATAATGTGCGAGGTTCAAATGGGAATTTAGAAGATGCTTTGCAGAGTGAGCTTGAGCTGATTCTAAGGGAGCAGCGCAATCAGCACGCCATTCATCGTGATAGGGAAATGAATATGTATAGGAGTGGCAGTGCACCGCCAACTGTGGAGGGATCGCTGAGTGCTGTGGGTAGTCTGTTTAGGAATTCTGATTTTAGGGATAGGGACATGAGAAGTAGGGTTAGTAGTAACAATGGGGGTTTGTCTGAAGATGAGATTCGCTCACATCCTGCTTACCTTTCGTACTATTATTCACATGACAATATCAACCCAAGATTGCCTCCGCCATTGTTGTCAAGAGAGGATTGGCGTGTTGCGCAGAGGTTTCAGAGTGGGTCTTCTTTTGAAGGTGCTGGAGATTGGAGGAAGAACAATTTAGTTGGTGATGGTGATAAGTCGTTGTTTTCAATGCAGCTGGGGCTTTCTGCACAGAATGCAGATAATGACTTGATCAAATTTAGAAATGCCAATGGGAGTAGTATGCATAGACAGACGTCATCTGAGTGGCTTGACAGAAATTCGAATAGTTTGACTGGATTCCCTACAAATGGACTTGGTGCAAGGAGGAAGAGTTTTGCTGACATTCTACAGGAAGGAAATGATCATCCAGCTTCCTTGTCAGGCCCCCTGTCAAGGCCATCAAGCCGTAATGCTTTTGGTGATGTCATGAATTCAACCGGCATGGCTGATCCACATCCAGTAGGGTTGTGTAATGGAGTGGATTCCATAGAGGGGTTGCACACCGGAGCAGCTCCACGTGGCTTGATAGGAATGCAGAGCCATGGTACCCCAGTTTCTCATTCATTTGCATCTGCTGGAGGTCCTTCTTTGTCAAGAAGCAGAACCCCTGAACCACAATTATTTGGAAGTTCTGGTCTTCCTCCTGTGGGAAGAGCGCTTCCTAATGTTGCTGGTGCAGATATCCAAAGTGATAGTTCGCCTGCCATGACTGAGTTGCCCAATATGACAACAAATTTATCTGGCTTAAGCCTCTCAAAAGTTAGATCTGCAGATGAAGATAGTCGTCTTCAGTCTCAGCTTCGTATGGACCTTCATAATCAGTGTGATTTTCTGTTCAACACACCAAACAGTCAGATTCAGAGGCTGCAGCAGCAACTGATAGAGAAGTCAAATGCTGAAAACTTTTCCCTTTCTACAAATTATGCTCATTTGGCAAATAAAAATGGGATTCTAACAAACCGTAATGCATCAAATGGGCATGTTCATTTTCCTAGAAGAACTTCTTCTCCCAGTCTTTACTCAAACGGGAGTTCTTCAGGACTTGGAACTTTGGAAGGGTTGAGTGCTCATTACCAGGATGCAAATACCCCAGGAATCGACTTTGATGGTCATGCTGCCGGGGCATATCCTATAAATCAGAAGTTGAACAATCATCTCGATGCAGGTTTTACTGGTAGTGGTGACGGACAAAGTATGAACAGATTAGGGAACAAAGTAGGGCCTGGCCTTCATTCTTCGTCTGTGGACCCATCATATATTCAGTTAATGCAAAGAACTGATTATGCAGCACATGCTCTGGCTAGTCCAAGTGGTTATTCTCTGAGTAAAAATAACTTTGGCAATTTGCATGGAGACTTAGAGGGGCTTCAGAAAGCATACCTCGAGGCAATACTTGCTCAAAGGAAGCAACAGTACGAGTTGTCCCTTTTAAGTCAATCTGGGGGGTTTGATCATGGTTATTTTGGGAATCCATCATATGGCCTTGGGATGACATATCCAGGAATCTCAGTGGCAAACTCTGTTCTTCCTTCTGTTGGATCCGGAAGTTCAATGTTTCAGAATGAGAAGATTTCCCGCTTTAATTCTGTGATGAGAAGTTCAGTGGGAGGTTCAGTCAGCACCTGGCACTCAGATGCTGGAAATGACTTTGAAGGAAGACATGCATCATCATTATTAGATGAGTTCAAGAACAACAAGAATAAGTCTTTTGAACTTGCAGATATTGTTGATCACGTAGTTGAATTCAGTACCGATCAGTATGGAAGTCGCTTTATCCAGCAGAAACTCGAAACTGCCACTGTAGAAGAAAAAATGAAAATATTCCCTGAGATTATTCCTCATGCTCGCACCTTGATGACTGATGTTTTTGGAAATTATGTCATACAGAAATTCTTTGAGCATGGTACAGAAAGCCAAAGAAATGAATTGACGAACCAACTTACTGGCCATGTTTTGCCTCTCAGTCTGCAAATGTATGGTTGTAGAGTGATTCAGAAGGTGATCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NABP PUF

Protein Analysis

776

Amino Acids

84.37

Weight (kDa)

6.25

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NABP	PF07990	317 - 680	7.4e-104	Nucleic acid binding protein NABP
PUF	PF00806	685 - 719	1.2e-11	Pumilio-family RNA binding repeat
PUF	PF00806	723 - 754	1.3e-08	Pumilio-family RNA binding repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10360
fragaria_vesca	FvH4_7g18910 FvH4_7g18910
malus_domestica	MD01G1104900.v1.1 MD07G1171400.v1.1
prunus_persica	Prupe.2G210200_v2.0.a1
pyrus_communis	pycom01g13150 pycom01g15780 pycom07g16530 pycom07g16540 pycom07g16560
rosa_chinensis	RchiOBHm_Chr1g0362841
rosa_laevigata	RLG00000027618
rosa_multiflora	Rmu_sc0001502.1_g000016
rosa_roxburghii	Rroxscaffold_4G00293720
rosa_rugosa	Rorug01G0301800 Rorug01G0301800 Rorug01G0301800 Rorug01G0301900
rosa_samantha	Rh1AG310700 Rh1BG273800 Rh1CG291000 Rh1DG304600
rosa_wichuraiana	Rw1G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	578
AbsI	CCTCGAGG	1 cut(s)	1703
Acc16I	TGCGCA	1 cut(s)	399
Acc36I	ACCTGC	1 cut(s)	1475
Acc65I	GGTACC	1 cut(s)	866
AccB1I	GGYRCC	1 cut(s)	866
AccB7I	CCANNNNNTGG	1 cut(s)	1799
AccIII	TCCGGA	1 cut(s)	1862
AciI	CCGC	3 cut(s)	179, 365, 1897
AclWI	GGATC	4 cut(s)	202, 764, 1854, 1867
AcoI	YGGCCR	1 cut(s)	2266
AcsI	RAATTY	8 cut(s)	67, 226, 536, 598, 751, 1054, 2063, 2210
AcuI	CTGAAG	4 cut(s)	309, 1094, 1341, 1673
AcvI	CACGTG	1 cut(s)	839
AcyI	GRCGYC	1 cut(s)	575
AfaI	GTAC	5 cut(s)	326, 868, 1736, 2071, 2227
AfeI	AGCGCT	1 cut(s)	978
AfiI	CCNNNNNNNGG	6 cut(s)	629, 714, 813, 968, 1799, 1856
AflII	CTTAAG	1 cut(s)	1066
AjnI	CCWGG	5 cut(s)	1395, 1411, 1543, 1819, 1943
AjuI	GAANNNNNNNTTGG	2 cut(s)	1621, 1653
AloI	GAACNNNNNNTCC	2 cut(s)	1312, 1344
AluBI	AGCT	6 cut(s)	94, 100, 496, 692, 833, 1120
AluI	AGCT	6 cut(s)	94, 100, 496, 692, 833, 1120
Alw21I	GWGCWC	2 cut(s)	178, 1390
Alw26I	GTCTC	2 cut(s)	1119, 1668
Alw44I	GTGCAC	1 cut(s)	174
AlwI	GGATC	4 cut(s)	202, 764, 1854, 1867
AlwNI	CAGNNNCTG	4 cut(s)	1186, 1198, 1944, 1958
Ama87I	CYCGRG	1 cut(s)	1703
Aor13HI	TCCGGA	1 cut(s)	1862
Aor51HI	AGCGCT	1 cut(s)	978
AoxI	GGCC	6 cut(s)	703, 716, 1541, 1546, 1801, 2266
ApaLI	GTGCAC	1 cut(s)	174
ApeKI	GCWGC	8 cut(s)	115, 493, 830, 1186, 1189, 1192, 1436, 1607
ApoI	RAATTY	8 cut(s)	67, 226, 536, 598, 751, 1054, 2063, 2210
Asp700I	GAANNNNTTC	3 cut(s)	1321, 1324, 2141
Asp718I	GGTACC	1 cut(s)	866
AspLEI	GCGC	3 cut(s)	120, 400, 979
AspS9I	GGNCC	5 cut(s)	704, 902, 1129, 1541, 1567
AsuC2I	CCSGG	1 cut(s)	1441
AsuHPI	GGTGA	4 cut(s)	476, 482, 752, 1514
AsuII	TTCGAA	1 cut(s)	602
AvaI	CYCGRG	1 cut(s)	1703
AvaII	GGWCC	3 cut(s)	902, 1129, 1567
BaeGI	GKGCMC	1 cut(s)	178
BaeI	ACNNNNGTAYC	2 cut(s)	858, 891
BalI	TGGCCA	1 cut(s)	2268
BamHI	GGATCC	1 cut(s)	1859
BanI	GGYRCC	1 cut(s)	866
BarI	GAAGNNNNNNTAC	2 cut(s)	1718, 1750
BbrPI	CACGTG	1 cut(s)	839
BbsI	GAAGAC	4 cut(s)	411, 950, 1100, 1984
Bbv12I	GWGCWC	2 cut(s)	178, 1390
BbvI	GCAGC	8 cut(s)	127, 505, 842, 1173, 1201, 1204, 1423, 1619
BccI	CCATC	5 cut(s)	461, 727, 1421, 1579, 1801
BceAI	ACGGC	1 cut(s)	711
BciT130I	CCWGG	5 cut(s)	1397, 1413, 1545, 1821, 1945
BclI	TGATCA	4 cut(s)	531, 682, 1771, 2050
BcnI	CCSGG	1 cut(s)	1441
BcoDI	GTCTC	2 cut(s)	1119, 1668
BfaI	CTAG	4 cut(s)	6, 38, 1314, 1623
BfmI	CTRYAG	4 cut(s)	668, 1089, 1187, 2121
BfoI	RGCGCY	1 cut(s)	980
BfrI	CTTAAG	1 cut(s)	1066
BfuAI	ACCTGC	1 cut(s)	1475
BglII	AGATCT	1 cut(s)	1085
BisI	GCNGC	8 cut(s)	116, 494, 831, 1187, 1190, 1193, 1437, 1608
BlsI	GCNGC	8 cut(s)	117, 495, 832, 1188, 1191, 1194, 1438, 1609
Bme1390I	CCNGG	6 cut(s)	1397, 1413, 1441, 1545, 1821, 1945
Bme18I	GGWCC	3 cut(s)	902, 1129, 1567
BmeT110I	CYCGRG	1 cut(s)	1703
BmgT120I	GGNCC	5 cut(s)	704, 902, 1129, 1541, 1567
BmiI	GGNNCC	4 cut(s)	706, 868, 1569, 1861
BmrFI	CCNGG	6 cut(s)	1397, 1413, 1441, 1545, 1821, 1945
BmrI	ACTGGG	2 cut(s)	866, 1326
BmsI	GCATC	7 cut(s)	67, 899, 1298, 1390, 1471, 1945, 1994
BmuI	ACTGGG	2 cut(s)	866, 1326
BoxI	GACNNNNGTC	1 cut(s)	574
BpiI	GAAGAC	4 cut(s)	411, 950, 1100, 1984
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BpmI	CTGGAG	2 cut(s)	456, 918
Bpu14I	TTCGAA	1 cut(s)	602
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	1441
BsaAI	YACGTR	2 cut(s)	839, 2056
BsaBI	GATNNNNATC	1 cut(s)	774
BsaHI	GRCGYC	1 cut(s)	575
BsaJI	CCNNGG	4 cut(s)	862, 1411, 1440, 1804
BsaWI	WCCGGW	2 cut(s)	824, 1862
BsaXI	ACNNNNNCTCC	8 cut(s)	157, 187, 637, 667, 1312, 1342, 1920, 1950
Bsc4I	CCNNNNNNNGG	6 cut(s)	629, 714, 813, 968, 1799, 1856
Bse118I	RCCGGY	1 cut(s)	758
Bse1I	ACTGG	6 cut(s)	619, 779, 872, 1332, 1498, 2269
Bse8I	GATNNNNATC	1 cut(s)	774
BseAI	TCCGGA	1 cut(s)	1862
BseBI	CCWGG	5 cut(s)	1397, 1413, 1545, 1821, 1945
BseDI	CCNNGG	4 cut(s)	862, 1411, 1440, 1804
BseGI	GGATG	5 cut(s)	307, 685, 775, 1405, 1815
BseJI	GATNNNNATC	1 cut(s)	774
BseLI	CCNNNNNNNGG	6 cut(s)	629, 714, 813, 968, 1799, 1856
BseMII	CTCAG	9 cut(s)	191, 573, 1023, 1130, 1634, 1842, 1965, 2139, 2296
BseNI	ACTGG	6 cut(s)	619, 779, 872, 1332, 1498, 2269
BseSI	GKGCMC	1 cut(s)	178
BseXI	GCAGC	8 cut(s)	127, 505, 842, 1173, 1201, 1204, 1423, 1619
BseYI	CCCAGC	1 cut(s)	496
BsgI	GTGCAG	2 cut(s)	492, 1017
BshFI	GGCC	6 cut(s)	705, 718, 1543, 1548, 1803, 2268
BshNI	GGYRCC	1 cut(s)	866
BsiHKAI	GWGCWC	2 cut(s)	178, 1390
BsiHKCI	CYCGRG	1 cut(s)	1703
BsiSI	CCGG	4 cut(s)	759, 825, 1440, 1863
BslFI	GGGAC	2 cut(s)	260, 1729
BslI	CCNNNNNNNGG	6 cut(s)	629, 714, 813, 968, 1799, 1856
BsmAI	GTCTC	2 cut(s)	1119, 1668
BsmFI	GGGAC	2 cut(s)	260, 1729
BsmI	GAATGC	2 cut(s)	520, 858
BsnI	GGCC	6 cut(s)	705, 718, 1543, 1548, 1803, 2268
BsoBI	CYCGRG	1 cut(s)	1703
Bsp119I	TTCGAA	1 cut(s)	602
Bsp1286I	GDGCHC	2 cut(s)	178, 1390
Bsp13I	TCCGGA	1 cut(s)	1862
Bsp19I	CCATGG	1 cut(s)	862
BspACI	CCGC	3 cut(s)	179, 365, 1897
BspANI	GGCC	6 cut(s)	705, 718, 1543, 1548, 1803, 2268
BspCNI	CTCAG	9 cut(s)	192, 574, 1024, 1129, 1635, 1841, 1964, 2140, 2295
BspEI	TCCGGA	1 cut(s)	1862
BspHI	TCATGA	1 cut(s)	747
BspLI	GGNNCC	4 cut(s)	706, 868, 1569, 1861
BspMAI	CTGCAG	2 cut(s)	1093, 1191
BspMI	ACCTGC	1 cut(s)	1475
BspPI	GGATC	4 cut(s)	202, 764, 1854, 1867
BspQI	GCTCTTC	1 cut(s)	967
BspT104I	TTCGAA	1 cut(s)	602
BspT107I	GGYRCC	1 cut(s)	866
BspTI	CTTAAG	1 cut(s)	1066
BsrFI	RCCGGY	1 cut(s)	758
BsrI	ACTGG	6 cut(s)	619, 779, 872, 1332, 1498, 2269
BssAI	RCCGGY	1 cut(s)	758
BssECI	CCNNGG	4 cut(s)	862, 1411, 1440, 1804
BssNI	GRCGYC	1 cut(s)	575
BssT1I	CCWWGG	2 cut(s)	862, 1804
Bst2UI	CCWGG	5 cut(s)	1397, 1413, 1545, 1821, 1945
Bst4CI	ACNGT	5 cut(s)	187, 1172, 1283, 1734, 2122
Bst6I	CTCTTC	2 cut(s)	644, 967
BstACI	GRCGYC	1 cut(s)	575
BstAFI	CTTAAG	1 cut(s)	1066
BstAPI	GCANNNNNTGC	3 cut(s)	515, 1613, 1715
BstBAI	YACGTR	2 cut(s)	839, 2056
BstBI	TTCGAA	1 cut(s)	602
BstC8I	GCNNGC	3 cut(s)	129, 1023, 2167
BstDSI	CCRYGG	1 cut(s)	862
BstF5I	GGATG	5 cut(s)	307, 685, 775, 1405, 1815
BstH2I	RGCGCY	1 cut(s)	980
BstHHI	GCGC	3 cut(s)	120, 400, 979
BstMAI	GTCTC	2 cut(s)	1119, 1668
BstNI	CCWGG	5 cut(s)	1397, 1413, 1545, 1821, 1945
BstNSI	RCATGY	3 cut(s)	1304, 1616, 1985
BstPAI	GACNNNNGTC	1 cut(s)	574
BstSCI	CCNGG	6 cut(s)	1395, 1411, 1439, 1543, 1819, 1943
BstSFI	CTRYAG	4 cut(s)	668, 1089, 1187, 2121
BstSLI	GKGCMC	1 cut(s)	178
BstV1I	GCAGC	8 cut(s)	127, 505, 842, 1173, 1201, 1204, 1423, 1619
BstV2I	GAAGAC	4 cut(s)	411, 950, 1100, 1984
BstX2I	RGATCY	2 cut(s)	1085, 1859
BstXI	CCANNNNNNTGG	1 cut(s)	2264
BstYI	RGATCY	2 cut(s)	1085, 1859
BsuRI	GGCC	6 cut(s)	705, 718, 1543, 1548, 1803, 2268
BtgI	CCRYGG	1 cut(s)	862
BtsCI	GGATG	5 cut(s)	307, 685, 775, 1405, 1815
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	5 cut(s)	178, 1148, 1836, 1929, 2118
BveI	ACCTGC	1 cut(s)	1475
Cac8I	GCNNGC	3 cut(s)	129, 1023, 2167
CaiI	CAGNNNCTG	4 cut(s)	1186, 1198, 1944, 1958
CciI	TCATGA	1 cut(s)	747
CfoI	GCGC	3 cut(s)	120, 400, 979
Cfr10I	RCCGGY	1 cut(s)	758
Cfr13I	GGNCC	5 cut(s)	704, 902, 1129, 1541, 1567
Csp6I	GTAC	5 cut(s)	325, 867, 1735, 2070, 2226
CspCI	CAANNNNNGTGG	2 cut(s)	825, 860
CviQI	GTAC	5 cut(s)	325, 867, 1735, 2070, 2226
EaeI	YGGCCR	1 cut(s)	2266
Eam1104I	CTCTTC	2 cut(s)	644, 967
EarI	CTCTTC	2 cut(s)	644, 967
EciI	GGCGGA	1 cut(s)	354
Eco130I	CCWWGG	2 cut(s)	862, 1804
Eco32I	GATATC	1 cut(s)	1003
Eco47I	GGWCC	3 cut(s)	902, 1129, 1567
Eco47III	AGCGCT	1 cut(s)	978
Eco57I	CTGAAG	4 cut(s)	309, 1094, 1341, 1673
Eco72I	CACGTG	1 cut(s)	839
Eco88I	CYCGRG	1 cut(s)	1703
EcoO109I	RGGNCCY	3 cut(s)	704, 902, 1541
EcoRI	GAATTC	3 cut(s)	226, 751, 2063
EcoRII	CCWGG	5 cut(s)	1395, 1411, 1543, 1819, 1943
EcoRV	GATATC	1 cut(s)	1003
EcoT14I	CCWWGG	2 cut(s)	862, 1804
EcoT22I	ATGCAT	3 cut(s)	567, 1291, 1987
ErhI	CCWWGG	2 cut(s)	862, 1804
FalI	AAGNNNNNCTT	2 cut(s)	1309, 1341
FaqI	GGGAC	2 cut(s)	260, 1729
FauI	CCCGC	1 cut(s)	1904
FauNDI	CATATG	1 cut(s)	1798
FbaI	TGATCA	4 cut(s)	531, 682, 1771, 2050
Fnu4HI	GCNGC	8 cut(s)	116, 494, 831, 1187, 1190, 1193, 1437, 1608
FokI	GGATG	5 cut(s)	294, 672, 762, 1412, 1822
Fsp4HI	GCNGC	8 cut(s)	116, 494, 831, 1187, 1190, 1193, 1437, 1608
FspBI	CTAG	4 cut(s)	6, 38, 1314, 1623
FspI	TGCGCA	1 cut(s)	399
GlaI	GCGC	3 cut(s)	119, 399, 978
GluI	GCNGC	8 cut(s)	116, 494, 831, 1187, 1190, 1193, 1437, 1608
GsaI	CCCAGC	1 cut(s)	500
GsuI	CTGGAG	2 cut(s)	456, 918
HaeII	RGCGCY	1 cut(s)	980
HaeIII	GGCC	6 cut(s)	705, 718, 1543, 1548, 1803, 2268
HapII	CCGG	4 cut(s)	759, 825, 1440, 1863
HhaI	GCGC	3 cut(s)	120, 400, 979
Hin1I	GRCGYC	1 cut(s)	575
Hin6I	GCGC	3 cut(s)	118, 398, 977
HinP1I	GCGC	3 cut(s)	118, 398, 977
HpaII	CCGG	4 cut(s)	759, 825, 1440, 1863
HphI	GGTGA	4 cut(s)	476, 482, 752, 1514
Hpy166II	GTNNAC	2 cut(s)	176, 1567
Hpy188III	TCNNGA	9 cut(s)	140, 378, 748, 915, 1359, 1478, 1863, 2008, 2328
Hpy8I	GTNNAC	2 cut(s)	176, 1567
HpyAV	CCTTC	9 cut(s)	422, 668, 915, 1142, 1370, 1559, 1860, 1967, 2311
HpyCH4III	ACNGT	5 cut(s)	187, 1172, 1283, 1734, 2122
HpyCH4IV	ACGT	3 cut(s)	575, 838, 2055
HpySE526I	ACGT	3 cut(s)	575, 838, 2055
Hsp92I	GRCGYC	1 cut(s)	575
HspAI	GCGC	3 cut(s)	118, 398, 977
Kpn2I	TCCGGA	1 cut(s)	1862
KpnI	GGTACC	1 cut(s)	870
Ksp22I	TGATCA	4 cut(s)	531, 682, 1771, 2050
LguI	GCTCTTC	1 cut(s)	967
LmnI	GCTCC	3 cut(s)	112, 827, 838
Lsp1109I	GCAGC	8 cut(s)	127, 505, 842, 1173, 1201, 1204, 1423, 1619
LweI	GCATC	7 cut(s)	67, 899, 1298, 1390, 1471, 1945, 1994
MaeI	CTAG	4 cut(s)	6, 38, 1314, 1623
MaeII	ACGT	3 cut(s)	575, 838, 2055
MaeIII	GTNAC	2 cut(s)	269, 1502
MflI	RGATCY	2 cut(s)	1085, 1859
MhlI	GDGCHC	2 cut(s)	178, 1390
MlsI	TGGCCA	1 cut(s)	2268
MluNI	TGGCCA	1 cut(s)	2268
MmeI	TCCRAC	1 cut(s)	1837
Mox20I	TGGCCA	1 cut(s)	2268
Mph1103I	ATGCAT	3 cut(s)	567, 1291, 1987
MroI	TCCGGA	1 cut(s)	1862
MroXI	GAANNNNTTC	3 cut(s)	1321, 1324, 2141
MscI	TGGCCA	1 cut(s)	2268
MseI	TTAA	4 cut(s)	1067, 1586, 1751, 1902
MslI	CAYNNNNRTG	4 cut(s)	583, 1479, 1953, 2174
Msp20I	TGGCCA	1 cut(s)	2268
MspA1I	CMGCKG	1 cut(s)	496
MspCI	CTTAAG	1 cut(s)	1066
MspI	CCGG	4 cut(s)	759, 825, 1440, 1863
MspR9I	CCNGG	6 cut(s)	1397, 1413, 1441, 1545, 1821, 1945
Mva1269I	GAATGC	2 cut(s)	520, 858
MvaI	CCWGG	5 cut(s)	1397, 1413, 1545, 1821, 1945
NciI	CCSGG	1 cut(s)	1441
NcoI	CCATGG	1 cut(s)	862
NdeI	CATATG	1 cut(s)	1798
NlaIV	GGNNCC	4 cut(s)	706, 868, 1569, 1861
NmuCI	GTSAC	1 cut(s)	1502
NsbI	TGCGCA	1 cut(s)	399
NsiI	ATGCAT	3 cut(s)	567, 1291, 1987
NspI	RCATGY	3 cut(s)	1304, 1616, 1985
NspV	TTCGAA	1 cut(s)	602
PaeR7I	CTCGAG	1 cut(s)	1703
PagI	TCATGA	1 cut(s)	747
PciSI	GCTCTTC	1 cut(s)	967
PctI	GAATGC	2 cut(s)	520, 858
PdmI	GAANNNNTTC	3 cut(s)	1321, 1324, 2141
PflMI	CCANNNNNTGG	1 cut(s)	1799
PfoI	TCCNGGA	1 cut(s)	1819
PkrI	GCNGC	8 cut(s)	117, 495, 832, 1188, 1191, 1194, 1438, 1609
PmaCI	CACGTG	1 cut(s)	839
PmlI	CACGTG	1 cut(s)	839
Ppu21I	YACGTR	2 cut(s)	839, 2056
PpuMI	RGGWCCY	1 cut(s)	902
PshAI	GACNNNNGTC	1 cut(s)	574
Psp5II	RGGWCCY	1 cut(s)	902
Psp6I	CCWGG	5 cut(s)	1395, 1411, 1543, 1819, 1943
PspCI	CACGTG	1 cut(s)	839
PspFI	CCCAGC	1 cut(s)	496
PspGI	CCWGG	5 cut(s)	1395, 1411, 1543, 1819, 1943
PspN4I	GGNNCC	4 cut(s)	706, 868, 1569, 1861
PspPI	GGNCC	5 cut(s)	704, 902, 1129, 1541, 1567
PspPPI	RGGWCCY	1 cut(s)	902
PspXI	VCTCGAGB	1 cut(s)	1703
PstI	CTGCAG	2 cut(s)	1093, 1191
PstNI	CAGNNNCTG	4 cut(s)	1186, 1198, 1944, 1958
PsuI	RGATCY	2 cut(s)	1085, 1859
PvuII	CAGCTG	1 cut(s)	496
RsaI	GTAC	5 cut(s)	326, 868, 1736, 2071, 2227
RsaNI	GTAC	5 cut(s)	325, 867, 1735, 2070, 2226
RseI	CAYNNNNRTG	4 cut(s)	583, 1479, 1953, 2174
SapI	GCTCTTC	1 cut(s)	967
SaqAI	TTAA	4 cut(s)	1067, 1586, 1751, 1902
SatI	GCNGC	8 cut(s)	116, 494, 831, 1187, 1190, 1193, 1437, 1608
Sau96I	GGNCC	5 cut(s)	704, 902, 1129, 1541, 1567
ScrFI	CCNGG	6 cut(s)	1397, 1413, 1441, 1545, 1821, 1945
SduI	GDGCHC	2 cut(s)	178, 1390
SfaNI	GCATC	7 cut(s)	67, 899, 1298, 1390, 1471, 1945, 1994
SfcI	CTRYAG	4 cut(s)	668, 1089, 1187, 2121
Sfr274I	CTCGAG	1 cut(s)	1703
SfuI	TTCGAA	1 cut(s)	602
SinI	GGWCC	3 cut(s)	902, 1129, 1567
SlaI	CTCGAG	1 cut(s)	1703
SmiMI	CAYNNNNRTG	4 cut(s)	583, 1479, 1953, 2174
SmlI	CTYRAG	3 cut(s)	95, 1066, 1703
SmoI	CTYRAG	3 cut(s)	95, 1066, 1703
SsiI	CCGC	3 cut(s)	179, 365, 1897
SspI	AATATT	1 cut(s)	2142
SspMI	CTAG	4 cut(s)	6, 38, 1314, 1623
StyD4I	CCNGG	6 cut(s)	1395, 1411, 1439, 1543, 1819, 1943
StyI	CCWWGG	2 cut(s)	862, 1804
TaaI	ACNGT	5 cut(s)	187, 1172, 1283, 1734, 2122
TaiI	ACGT	3 cut(s)	578, 841, 2058
TaqI	TCGA	5 cut(s)	602, 1419, 1479, 1704, 2109
Tru1I	TTAA	4 cut(s)	1067, 1586, 1751, 1902
Tru9I	TTAA	4 cut(s)	1067, 1586, 1751, 1902
TscAI	CASTG	5 cut(s)	178, 1148, 1836, 1929, 2125
TseFI	GTSAC	1 cut(s)	1502
TseI	GCWGC	8 cut(s)	115, 493, 830, 1186, 1189, 1192, 1436, 1607
Tsp45I	GTSAC	1 cut(s)	1502
TspGWI	ACGGA	1 cut(s)	1521
TspRI	CASTG	5 cut(s)	178, 1148, 1836, 1929, 2125
Van91I	CCANNNNNTGG	1 cut(s)	1799
Vha464I	CTTAAG	1 cut(s)	1066
VneI	GTGCAC	1 cut(s)	174
VpaK11BI	GGWCC	3 cut(s)	902, 1129, 1567
XapI	RAATTY	8 cut(s)	67, 226, 536, 598, 751, 1054, 2063, 2210
XceI	RCATGY	3 cut(s)	1304, 1616, 1985
XhoI	CTCGAG	1 cut(s)	1703
XmnI	GAANNNNTTC	3 cut(s)	1321, 1324, 2141
XspI	CTAG	4 cut(s)	6, 38, 1314, 1623
ZraI	GACGTC	1 cut(s)	576
Zsp2I	ATGCAT	3 cut(s)	567, 1291, 1987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.