pycom01g15470

Dolichyl-phosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0011278
Physical Location & Seq
Reverse (-)
15313607 .. 15316535
2929 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 981 bp
ATGGAGTTTGTAATTGTATGGACAATGGTGGAGCTCCTGCTCGCCCTCATTCTCGTTGTCGCCACAGGTTTAGCTACTGCCGTCTTCTTCGAAGCTTATCGCAGAAAAAACAACAACGCGCATGTTGGAGCTCCCGCGATCTTCGAGGACCCCAATTCGTTGAAACAGGTTCCTTGCCCTTCTATATTTGATCGATCTGAGAAGTATTTATCTTTGATTGTCCCTGCATTCAATGAGGAGCTTAGGCTTCCCGGAGCACTTGATGAAACCATGAATTATCTTCAACAGCGTGCTGCGAAGGATAAGTCTTTTACTTATGAGGTGGTGATTGTTGATGATGGAAGTGTTGATGGGACAAAAAGAGTGGCATTTGAATTTATAAAGAAATATACCGTGGACAATATGAGGATTATCCTTCTTGGTAGGAATCATGGAAAAGGTGAAGCTATCAGAAAAGGAATGCTACATTCACGTGGTGAGCTACTTCTAATGCTGGATGCTGATGGAGCAACCAAGATTCATGCAGTTGCTAAACAGGATAAGTTTAGGGACTCATCTGTGGGTAATTCAAGTTTTAGAATATCTGATATCCCCATTGCTGCATTTGGTTCTCGTGCTCATCTTGAGGGGAAAGCCCTGGCTACAAGGAAGTGGTATCGCAATTTTTTAATGAAAGGTTTTCATCTTGTGGTTCTTTTGGCTTCTGGTCCTGGAATTCGGGATACACAGTGTGGGTTTAAGATGTTCACTAGGGCTGCTGCAAGGAAGATTTTCACTAACATCCGTTTGAACAGGTGGTGCTTTGATGTTGAGGTAGTGTACTTGTGCAAATGGTTCAAAATTCCAATGCTTGAGATATCTGTAAACTGGTCTGAAATTCCTGGATCGAAGGTGAACCTGTTGAGCATTCCAAATATGCTTTGGGAGCTTGTGCTCATGTCTGTTGGATATAGAACCGGCATGTGGAAAATTCGCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko01100 map00510 map01100
Pfam Domains
Protein Families
Glycos_transf_2

Protein Analysis

327

Amino Acids

36.92

Weight (kDa)

9.55

Isoelectric Point (pI)

22.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_2 PF00535 71 - 178 1.1e-19 Glycosyl transferase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39630
fragaria_vesca FvH4_7g22450 FvH4_7g22450
malus_domestica MD01G1133900.v1.1 MD07G1198100.v1.1
prunus_persica Prupe.2G235200_v2.0.a1
pyrus_communis pycom01g15470 pycom07g18530
rosa_chinensis RchiOBHm_Chr1g0367061
rosa_laevigata RLG00000027302
rosa_multiflora Rmu_sc0037952.1_g000001 Rmu_sc0037953.1_g000001
rosa_roxburghii Rroxscaffold_4G00289650
rosa_rugosa Rorug01G0334200 Rorug01G0334300
rosa_samantha Rh1AG341100 Rh1BG301600 Rh1CG317800 Rh1DG334000
rosa_wichuraiana Rw1G030300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 380
AccII CGCG 2 cut(s) 119, 137
AciI CCGC 1 cut(s) 135
AclWI GGATC 1 cut(s) 892
AcsI RAATTY 5 cut(s) 374, 714, 840, 876, 969
AcvI CACGTG 1 cut(s) 473
AdeI CACNNNGTG 2 cut(s) 476, 731
AfaI GTAC 1 cut(s) 821
AfiI CCNNNNNNNGG 1 cut(s) 963
AgsI TTSAA 7 cut(s) 163, 232, 284, 374, 570, 790, 838
AjnI CCWGG 3 cut(s) 636, 709, 880
AluBI AGCT 9 cut(s) 34, 74, 95, 131, 241, 446, 481, 928, 978
AluI AGCT 9 cut(s) 34, 74, 95, 131, 241, 446, 481, 928, 978
Alw21I GWGCWC 5 cut(s) 36, 133, 259, 619, 936
AlwI GGATC 1 cut(s) 892
ApeKI GCWGC 5 cut(s) 293, 599, 755, 758, 975
ApoI RAATTY 5 cut(s) 374, 714, 840, 876, 969
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
Asp700I GAANNNNTTC 1 cut(s) 770
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 2 cut(s) 148, 707
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 4 cut(s) 337, 452, 488, 904
AsuII TTCGAA 1 cut(s) 90
AvaII GGWCC 2 cut(s) 148, 707
BanII GRGCYC 2 cut(s) 36, 133
BauI CACGAG 1 cut(s) 612
BbrPI CACGTG 1 cut(s) 473
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 5 cut(s) 36, 133, 259, 619, 936
BbvI GCAGC 4 cut(s) 280, 586, 742, 745
BccI CCATC 3 cut(s) 332, 344, 497
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 3 cut(s) 638, 711, 882
BciVI GTATCC 1 cut(s) 715
BcnI CCSGG 1 cut(s) 252
BfaI CTAG 1 cut(s) 750
BfuI GTATCC 1 cut(s) 715
BisI GCNGC 5 cut(s) 294, 600, 756, 759, 976
BlsI GCNGC 5 cut(s) 295, 601, 757, 760, 977
Bme1390I CCNGG 4 cut(s) 252, 638, 711, 882
Bme18I GGWCC 2 cut(s) 148, 707
BmgT120I GGNCC 2 cut(s) 148, 707
BmiI GGNNCC 2 cut(s) 150, 171
BmrFI CCNGG 4 cut(s) 252, 638, 711, 882
BmsI GCATC 1 cut(s) 487
BpiI GAAGAC 1 cut(s) 76
Bpu10I CCTNAGC 1 cut(s) 242
Bpu14I TTCGAA 1 cut(s) 90
BpuEI CTTGAG 2 cut(s) 644, 872
BpuMI CCSGG 1 cut(s) 252
Bsa29I ATCGAT 1 cut(s) 193
BsaAI YACGTR 1 cut(s) 473
BsaJI CCNNGG 2 cut(s) 393, 636
Bsc4I CCNNNNNNNGG 1 cut(s) 963
Bse118I RCCGGY 1 cut(s) 956
Bse1I ACTGG 1 cut(s) 872
Bse3DI GCAATG 1 cut(s) 594
BseBI CCWGG 3 cut(s) 638, 711, 882
BseCI ATCGAT 1 cut(s) 193
BseDI CCNNGG 2 cut(s) 393, 636
BseGI GGATG 2 cut(s) 502, 780
BseLI CCNNNNNNNGG 1 cut(s) 963
BseMI GCAATG 1 cut(s) 594
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 872
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 4 cut(s) 280, 586, 742, 745
Bsh1236I CGCG 2 cut(s) 119, 137
BshVI ATCGAT 1 cut(s) 193
BsiHKAI GWGCWC 5 cut(s) 36, 133, 259, 619, 936
BsiSI CCGG 2 cut(s) 252, 957
BslFI GGGAC 3 cut(s) 206, 367, 563
BslI CCNNNNNNNGG 1 cut(s) 963
BsmFI GGGAC 3 cut(s) 206, 367, 563
BsmI GAATGC 3 cut(s) 227, 465, 906
Bsp119I TTCGAA 1 cut(s) 90
Bsp1286I GDGCHC 5 cut(s) 36, 133, 259, 619, 936
Bsp143I GATC 4 cut(s) 138, 190, 194, 884
BspACI CCGC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 190
BspDI ATCGAT 1 cut(s) 193
BspFNI CGCG 2 cut(s) 119, 137
BspLI GGNNCC 2 cut(s) 150, 171
BspPI GGATC 1 cut(s) 892
BspT104I TTCGAA 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 594
BsrFI RCCGGY 1 cut(s) 956
BsrI ACTGG 1 cut(s) 872
BssAI RCCGGY 1 cut(s) 956
BssECI CCNNGG 2 cut(s) 393, 636
BssMI GATC 4 cut(s) 138, 190, 194, 884
BssSI CACGAG 1 cut(s) 612
Bst2BI CACGAG 1 cut(s) 612
Bst2UI CCWGG 3 cut(s) 638, 711, 882
Bst4CI ACNGT 2 cut(s) 394, 729
BstBAI YACGTR 1 cut(s) 473
BstBI TTCGAA 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 42, 291
BstDEI CTNAG 2 cut(s) 198, 242
BstDSI CCRYGG 1 cut(s) 393
BstF5I GGATG 2 cut(s) 502, 780
BstFNI CGCG 2 cut(s) 119, 137
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 4 cut(s) 141, 193, 197, 887
BstMBI GATC 4 cut(s) 138, 190, 194, 884
BstMWI GCNNNNNNNGC 2 cut(s) 506, 925
BstNI CCWGG 3 cut(s) 638, 711, 882
BstNSI RCATGY 2 cut(s) 125, 964
BstSCI CCNGG 4 cut(s) 250, 636, 709, 880
BstUI CGCG 2 cut(s) 119, 137
BstV1I GCAGC 4 cut(s) 280, 586, 742, 745
BstV2I GAAGAC 1 cut(s) 76
Bsu15I ATCGAT 1 cut(s) 193
BsuI GTATCC 1 cut(s) 715
BsuTUI ATCGAT 1 cut(s) 193
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 2 cut(s) 502, 780
BtsIMutI CAGTG 1 cut(s) 734
Cac8I GCNNGC 2 cut(s) 42, 291
CfoI GCGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 956
Cfr13I GGNCC 2 cut(s) 148, 707
ClaI ATCGAT 1 cut(s) 193
Csp6I GTAC 1 cut(s) 820
CspCI CAANNNNNGTGG 2 cut(s) 345, 380
CviAII CATG 6 cut(s) 122, 271, 431, 521, 937, 961
CviQI GTAC 1 cut(s) 820
DdeI CTNAG 2 cut(s) 198, 242
DpnI GATC 4 cut(s) 140, 192, 196, 886
DpnII GATC 4 cut(s) 138, 190, 194, 884
DraIII CACNNNGTG 2 cut(s) 476, 731
Ecl136II GAGCTC 2 cut(s) 34, 131
Eco24I GRGCYC 2 cut(s) 36, 133
Eco32I GATATC 2 cut(s) 589, 858
Eco47I GGWCC 2 cut(s) 148, 707
Eco53kI GAGCTC 2 cut(s) 34, 131
Eco72I CACGTG 1 cut(s) 473
EcoICRI GAGCTC 2 cut(s) 34, 131
EcoO109I RGGNCCY 1 cut(s) 148
EcoRI GAATTC 1 cut(s) 714
EcoRII CCWGG 3 cut(s) 636, 709, 880
EcoRV GATATC 2 cut(s) 589, 858
EcoT38I GRGCYC 2 cut(s) 36, 133
FaeI CATG 6 cut(s) 125, 274, 434, 524, 940, 964
FaqI GGGAC 3 cut(s) 206, 367, 563
FatI CATG 6 cut(s) 121, 270, 430, 520, 936, 960
FauI CCCGC 1 cut(s) 142
Fnu4HI GCNGC 5 cut(s) 294, 600, 756, 759, 976
FokI GGATG 2 cut(s) 509, 767
FriOI GRGCYC 2 cut(s) 36, 133
Fsp4HI GCNGC 5 cut(s) 294, 600, 756, 759, 976
FspBI CTAG 1 cut(s) 750
GlaI GCGC 1 cut(s) 120
GluI GCNGC 5 cut(s) 294, 600, 756, 759, 976
HapII CCGG 2 cut(s) 252, 957
HhaI GCGC 1 cut(s) 121
Hin1II CATG 6 cut(s) 125, 274, 434, 524, 940, 964
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 3 cut(s) 427, 517, 551
HpaII CCGG 2 cut(s) 252, 957
HphI GGTGA 4 cut(s) 337, 452, 488, 904
Hpy166II GTNNAC 5 cut(s) 397, 747, 820, 865, 895
Hpy188I TCNGA 4 cut(s) 199, 452, 586, 874
Hpy188III TCNNGA 2 cut(s) 623, 719
Hpy8I GTNNAC 5 cut(s) 397, 747, 820, 865, 895
HpyAV CCTTC 4 cut(s) 189, 292, 425, 883
HpyCH4III ACNGT 2 cut(s) 394, 729
HpyCH4IV ACGT 1 cut(s) 472
HpyCH4V TGCA 5 cut(s) 227, 524, 602, 761, 828
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 925
HpyF3I CTNAG 2 cut(s) 198, 242
HpySE526I ACGT 1 cut(s) 472
Hsp92II CATG 6 cut(s) 125, 274, 434, 524, 940, 964
HspAI GCGC 1 cut(s) 119
Kzo9I GATC 4 cut(s) 138, 190, 194, 884
LmnI GCTCC 8 cut(s) 31, 39, 128, 136, 238, 254, 506, 925
Lsp1109I GCAGC 4 cut(s) 280, 586, 742, 745
LweI GCATC 1 cut(s) 487
MaeI CTAG 1 cut(s) 750
MaeII ACGT 1 cut(s) 472
MalI GATC 4 cut(s) 140, 192, 196, 886
MboI GATC 4 cut(s) 138, 190, 194, 884
MboII GAAGA 5 cut(s) 76, 79, 133, 272, 778
MhlI GDGCHC 5 cut(s) 36, 133, 259, 619, 936
MlyI GAGTC 1 cut(s) 545
MmeI TCCRAC 2 cut(s) 106, 925
MnlI CCTC 7 cut(s) 56, 139, 229, 313, 399, 619, 805
MroXI GAANNNNTTC 1 cut(s) 770
MseI TTAA 2 cut(s) 668, 738
MslI CAYNNNNRTG 1 cut(s) 471
MspA1I CMGCKG 1 cut(s) 978
MspI CCGG 2 cut(s) 252, 957
MspR9I CCNGG 4 cut(s) 252, 638, 711, 882
Mva1269I GAATGC 3 cut(s) 227, 465, 906
MvaI CCWGG 3 cut(s) 638, 711, 882
MvnI CGCG 2 cut(s) 119, 137
MwoI GCNNNNNNNGC 2 cut(s) 506, 925
NciI CCSGG 1 cut(s) 252
NdeII GATC 4 cut(s) 138, 190, 194, 884
NlaIII CATG 6 cut(s) 125, 274, 434, 524, 940, 964
NlaIV GGNNCC 2 cut(s) 150, 171
NspI RCATGY 2 cut(s) 125, 964
NspV TTCGAA 1 cut(s) 90
PctI GAATGC 3 cut(s) 227, 465, 906
PdmI GAANNNNTTC 1 cut(s) 770
PfeI GAWTC 2 cut(s) 427, 517
PfoI TCCNGGA 3 cut(s) 250, 709, 880
PkrI GCNGC 5 cut(s) 295, 601, 757, 760, 977
PleI GAGTC 1 cut(s) 545
PmaCI CACGTG 1 cut(s) 473
PmlI CACGTG 1 cut(s) 473
PpsI GAGTC 1 cut(s) 545
Ppu21I YACGTR 1 cut(s) 473
PpuMI RGGWCCY 1 cut(s) 148
PsiI TTATAA 1 cut(s) 380
Psp124BI GAGCTC 2 cut(s) 36, 133
Psp5II RGGWCCY 1 cut(s) 148
Psp6I CCWGG 3 cut(s) 636, 709, 880
PspCI CACGTG 1 cut(s) 473
PspGI CCWGG 3 cut(s) 636, 709, 880
PspN4I GGNNCC 2 cut(s) 150, 171
PspPI GGNCC 2 cut(s) 148, 707
PspPPI RGGWCCY 1 cut(s) 148
PvuII CAGCTG 1 cut(s) 978
RsaI GTAC 1 cut(s) 821
RsaNI GTAC 1 cut(s) 820
RseI CAYNNNNRTG 1 cut(s) 471
SacI GAGCTC 2 cut(s) 36, 133
SaqAI TTAA 2 cut(s) 668, 738
SatI GCNGC 5 cut(s) 294, 600, 756, 759, 976
Sau3AI GATC 4 cut(s) 138, 190, 194, 884
Sau96I GGNCC 2 cut(s) 148, 707
SchI GAGTC 1 cut(s) 545
ScrFI CCNGG 4 cut(s) 252, 638, 711, 882
SduI GDGCHC 5 cut(s) 36, 133, 259, 619, 936
SfaNI GCATC 1 cut(s) 487
SfuI TTCGAA 1 cut(s) 90
SinI GGWCC 2 cut(s) 148, 707
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 2 cut(s) 623, 851
SmoI CTYRAG 2 cut(s) 623, 851
SsiI CCGC 1 cut(s) 135
SspMI CTAG 1 cut(s) 750
SstI GAGCTC 2 cut(s) 36, 133
StyD4I CCNGG 4 cut(s) 250, 636, 709, 880
TaaI ACNGT 2 cut(s) 394, 729
TaiI ACGT 1 cut(s) 475
TaqI TCGA 4 cut(s) 90, 144, 193, 887
TatI WGTACW 1 cut(s) 819
TfiI GAWTC 2 cut(s) 427, 517
Tru1I TTAA 2 cut(s) 668, 738
Tru9I TTAA 2 cut(s) 668, 738
TscAI CASTG 1 cut(s) 734
TseI GCWGC 5 cut(s) 293, 599, 755, 758, 975
TspDTI ATGAA 5 cut(s) 279, 287, 509, 671, 686
TspGWI ACGGA 1 cut(s) 773
TspRI CASTG 1 cut(s) 734
VpaK11BI GGWCC 2 cut(s) 148, 707
XapI RAATTY 5 cut(s) 374, 714, 840, 876, 969
XceI RCATGY 2 cut(s) 125, 964
XcmI CCANNNNNNNNNTGG 1 cut(s) 918
XmnI GAANNNNTTC 1 cut(s) 770
XspI CTAG 1 cut(s) 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.