pycom01g16080

Protein YIPF1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0009035
Physical Location & Seq
Reverse (-)
15774464 .. 15778815
4352 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1113 bp
ATGGGCCTAAACTTGGCCCAATCAAACACAAGCCCATCCGCAAAGTGGAAAGCAAAGCAAACGCGCGCAGAGAAACGCGTTAATACCGGCCAGTCGTCTTGTACTCTGTGTTCCTTCCAAATTACGAAAAGCAACGTCTTTTCTGGGACTCGCCTGTCCGACTCAGTTTCAGCTCCCGACTCGAATCCCTCGAACTCGGAATCTCAAGCCCAGCGACTCTCTGAGCCTCAAAACGCGGCGTTTTGGTTTCCGTCTCAAATGGACGAGTCCTACGCTGGCCTCCCCACCAGCCACTTGCTCGGCTCCGTCCCTGCTGTTACTGAAGATAAAGAAAAGGGTACCACAAGTTATGAAGCACCTGAAGCGAATTTGCAAATCTTCCCCCCAAATAATAATCGAGGAGAGAAAGGGGGCGGTTATCAAACTGTTGGAAGTACAAGTGAAACATTTGAGCAACAACCAGCCAACAACTGGAGGGGAGTATTTAATATCGCATCATACACACAATATTTCAATGTGGATACAGACGTCGTCTTAAACAGAATGCTTAGTTCTCTATATCCCCATAATGGAGATTTTTTCAGCAAAATTGATGCCAACCCTGATCTATATGGGCTAGTCTGGATTTCCACTACGTTAGTGTTTGTGCTTGCTGCACTTGGAAACTGTGCCACCTACCTCATGGACAAGCGCACTGATAGCAGTACTGCTTGGGATTTTAATGTCAGTTATATGAATATGGCAGCCTTTTCAGTCTACGGTTATGCAATTTTGGTGCCATTGGCATTCTATTTCTTGATACAGTATATGGGCACCTCAAATGCCAGCCTAGTTCGGTTTTGGTGTATGTGGGGATACTCTCTCTTCATTTTCGTTGCAGCCTCTTTTCTGTTGCTTATCCCAGTTGAGGCTCTTCGGTGGATCATTATACTTCTCGTTGGCGGGACAGAAGGTGTAGAGGAGCTTCTTGTTGAGGTTGGCTTGGGATTTGAAGGACAGGAGGGCAACGGCGTCAGAGGAGGTTCGGAGGCGGCGGTGGGAATGGATTATCTGTGCTGGGTGGATGGCGTGCAGGAATGGAGGGGAAGGGAAATGTGGAAGATGGGAAAATAA

Protein Analysis

371

Amino Acids

40.81

Weight (kDa)

4.84

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 186 - 312 9.7e-12 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 154
AatII GACGTC 1 cut(s) 531
Acc65I GGTACC 1 cut(s) 338
AccB1I GGYRCC 3 cut(s) 338, 775, 812
AccB7I CCANNNNNTGG 1 cut(s) 471
AccI GTMKAC 1 cut(s) 756
AccII CGCG 4 cut(s) 64, 66, 78, 236
AciI CCGC 6 cut(s) 39, 236, 414, 942, 1031, 1034
AclWI GGATC 1 cut(s) 929
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 1 cut(s) 367
AcuI CTGAAG 2 cut(s) 342, 381
AcyI GRCGYC 2 cut(s) 528, 1011
AfaI GTAC 4 cut(s) 103, 340, 436, 706
AfiI CCNNNNNNNGG 5 cut(s) 13, 45, 471, 569, 907
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 2 cut(s) 514, 992
AluBI AGCT 2 cut(s) 173, 964
AluI AGCT 2 cut(s) 173, 964
Alw26I GTCTC 1 cut(s) 258
AlwI GGATC 1 cut(s) 929
AoxI GGCC 4 cut(s) 4, 15, 88, 277
ApeKI GCWGC 3 cut(s) 653, 743, 878
ApoI RAATTY 1 cut(s) 367
Asp718I GGTACC 1 cut(s) 338
AspLEI GCGC 3 cut(s) 66, 68, 693
AspS9I GGNCC 2 cut(s) 4, 16
BaeGI GKGCMC 1 cut(s) 815
BaeI ACNNNNGTAYC 2 cut(s) 513, 546
BanI GGYRCC 3 cut(s) 338, 775, 812
BarI GAAGNNNNNNTAC 2 cut(s) 948, 980
BbvI GCAGC 3 cut(s) 640, 755, 890
BccI CCATC 3 cut(s) 43, 1058, 1096
BceAI ACGGC 1 cut(s) 1024
BciVI GTATCC 2 cut(s) 514, 848
BcoDI GTCTC 1 cut(s) 258
BfaI CTAG 2 cut(s) 617, 830
BfuI GTATCC 2 cut(s) 514, 848
BisI GCNGC 5 cut(s) 237, 654, 744, 879, 1032
BlsI GCNGC 5 cut(s) 238, 655, 745, 880, 1033
BmcAI AGTACT 1 cut(s) 706
BmgT120I GGNCC 2 cut(s) 4, 16
BmiI GGNNCC 4 cut(s) 304, 340, 777, 814
BmrI ACTGGG 1 cut(s) 896
BmsI GCATC 2 cut(s) 503, 583
BmuI ACTGGG 1 cut(s) 896
BpmI CTGGAG 1 cut(s) 493
BpuEI CTTGAG 1 cut(s) 189
BsaHI GRCGYC 2 cut(s) 528, 1011
Bsc4I CCNNNNNNNGG 5 cut(s) 13, 45, 471, 569, 907
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 3 cut(s) 91, 476, 902
BseGI GGATG 2 cut(s) 35, 1069
BseLI CCNNNNNNNGG 5 cut(s) 13, 45, 471, 569, 907
BseMII CTCAG 2 cut(s) 177, 213
BseNI ACTGG 3 cut(s) 91, 476, 902
BsePI GCGCGC 1 cut(s) 64
BseRI GAGGAG 3 cut(s) 414, 974, 1032
BseSI GKGCMC 1 cut(s) 815
BseXI GCAGC 3 cut(s) 640, 755, 890
BseYI CCCAGC 2 cut(s) 210, 1056
BsgI GTGCAG 2 cut(s) 639, 1091
Bsh1236I CGCG 4 cut(s) 64, 66, 78, 236
BshFI GGCC 4 cut(s) 6, 17, 90, 279
BshNI GGYRCC 3 cut(s) 338, 775, 812
BsiSI CCGG 1 cut(s) 87
BslFI GGGAC 3 cut(s) 160, 293, 958
BslI CCNNNNNNNGG 5 cut(s) 13, 45, 471, 569, 907
BsmAI GTCTC 1 cut(s) 258
BsmBI CGTCTC 1 cut(s) 258
BsmFI GGGAC 3 cut(s) 160, 293, 958
BsmI GAATGC 2 cut(s) 549, 785
BsnI GGCC 4 cut(s) 6, 17, 90, 279
Bsp1286I GDGCHC 1 cut(s) 815
Bsp143I GATC 2 cut(s) 604, 921
BspACI CCGC 6 cut(s) 39, 236, 414, 942, 1031, 1034
BspANI GGCC 4 cut(s) 6, 17, 90, 279
BspCNI CTCAG 2 cut(s) 176, 214
BspFNI CGCG 4 cut(s) 64, 66, 78, 236
BspLI GGNNCC 4 cut(s) 304, 340, 777, 814
BspPI GGATC 1 cut(s) 929
BspQI GCTCTTC 1 cut(s) 918
BspT107I GGYRCC 3 cut(s) 338, 775, 812
BsrFI RCCGGY 1 cut(s) 86
BsrI ACTGG 3 cut(s) 91, 476, 902
BssAI RCCGGY 1 cut(s) 86
BssHII GCGCGC 1 cut(s) 64
BssMI GATC 2 cut(s) 604, 921
BssNI GRCGYC 2 cut(s) 528, 1011
Bst4CI ACNGT 4 cut(s) 427, 668, 761, 804
Bst6I CTCTTC 2 cut(s) 869, 918
BstACI GRCGYC 2 cut(s) 528, 1011
BstC8I GCNNGC 5 cut(s) 66, 277, 651, 826, 1070
BstDEI CTNAG 3 cut(s) 163, 222, 548
BstF5I GGATG 2 cut(s) 35, 1069
BstFNI CGCG 4 cut(s) 64, 66, 78, 236
BstHHI GCGC 3 cut(s) 66, 68, 693
BstKTI GATC 2 cut(s) 607, 924
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 2 cut(s) 604, 921
BstMWI GCNNNNNNNGC 2 cut(s) 362, 699
BstSLI GKGCMC 1 cut(s) 815
BstUI CGCG 4 cut(s) 64, 66, 78, 236
BstV1I GCAGC 3 cut(s) 640, 755, 890
BsuI GTATCC 2 cut(s) 514, 848
BsuRI GGCC 4 cut(s) 6, 17, 90, 279
BtsCI GGATG 2 cut(s) 35, 1069
BtsIMutI CAGTG 1 cut(s) 693
Cac8I GCNNGC 5 cut(s) 66, 277, 651, 826, 1070
CfoI GCGC 3 cut(s) 66, 68, 693
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 2 cut(s) 4, 16
CseI GACGC 1 cut(s) 1000
Csp6I GTAC 4 cut(s) 102, 339, 435, 705
CviAII CATG 1 cut(s) 682
CviQI GTAC 4 cut(s) 102, 339, 435, 705
DdeI CTNAG 3 cut(s) 163, 222, 548
DpnI GATC 2 cut(s) 606, 923
DpnII GATC 2 cut(s) 604, 921
DrdI GACNNNNNNGTC 1 cut(s) 154
DseDI GACNNNNNNGTC 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 2 cut(s) 869, 918
EarI CTCTTC 2 cut(s) 869, 918
Eco57I CTGAAG 2 cut(s) 342, 381
Esp3I CGTCTC 1 cut(s) 258
FaeI CATG 1 cut(s) 685
FaqI GGGAC 3 cut(s) 160, 293, 958
FatI CATG 1 cut(s) 681
FauI CCCGC 1 cut(s) 935
FblI GTMKAC 1 cut(s) 756
Fnu4HI GCNGC 5 cut(s) 237, 654, 744, 879, 1032
FokI GGATG 2 cut(s) 22, 1076
Fsp4HI GCNGC 5 cut(s) 237, 654, 744, 879, 1032
FspBI CTAG 2 cut(s) 617, 830
GlaI GCGC 3 cut(s) 65, 67, 692
GluI GCNGC 5 cut(s) 237, 654, 744, 879, 1032
GsaI CCCAGC 2 cut(s) 214, 1060
GsuI CTGGAG 1 cut(s) 493
HaeIII GGCC 4 cut(s) 6, 17, 90, 279
HapII CCGG 1 cut(s) 87
HgaI GACGC 1 cut(s) 1000
HhaI GCGC 3 cut(s) 66, 68, 693
Hin1I GRCGYC 2 cut(s) 528, 1011
Hin1II CATG 1 cut(s) 685
Hin6I GCGC 3 cut(s) 64, 66, 691
HinP1I GCGC 3 cut(s) 64, 66, 691
HinfI GANTC 7 cut(s) 148, 161, 179, 184, 200, 216, 266
HpaII CCGG 1 cut(s) 87
Hpy166II GTNNAC 1 cut(s) 757
Hpy188I TCNGA 5 cut(s) 160, 199, 223, 1016, 1027
Hpy188III TCNNGA 3 cut(s) 176, 622, 796
Hpy8I GTNNAC 1 cut(s) 757
Hpy99I CGWCG 1 cut(s) 533
HpyAV CCTTC 4 cut(s) 124, 944, 986, 1080
HpyCH4III ACNGT 4 cut(s) 427, 668, 761, 804
HpyCH4IV ACGT 3 cut(s) 135, 528, 635
HpyCH4V TGCA 5 cut(s) 373, 656, 767, 878, 1072
HpyF10VI GCNNNNNNNGC 2 cut(s) 362, 699
HpyF3I CTNAG 3 cut(s) 163, 222, 548
HpySE526I ACGT 3 cut(s) 135, 528, 635
Hsp92I GRCGYC 2 cut(s) 528, 1011
Hsp92II CATG 1 cut(s) 685
HspAI GCGC 3 cut(s) 64, 66, 691
KpnI GGTACC 1 cut(s) 342
Kzo9I GATC 2 cut(s) 604, 921
LguI GCTCTTC 1 cut(s) 918
LmnI GCTCC 3 cut(s) 178, 308, 961
Lsp1109I GCAGC 3 cut(s) 640, 755, 890
LweI GCATC 2 cut(s) 503, 583
MaeI CTAG 2 cut(s) 617, 830
MaeII ACGT 3 cut(s) 135, 528, 635
MaeIII GTNAC 1 cut(s) 316
MalI GATC 2 cut(s) 606, 923
MboI GATC 2 cut(s) 604, 921
MboII GAAGA 5 cut(s) 335, 370, 856, 905, 1111
MhlI GDGCHC 1 cut(s) 815
MluCI AATT 4 cut(s) 120, 367, 588, 768
MluI ACGCGT 1 cut(s) 76
MlyI GAGTC 5 cut(s) 142, 155, 173, 210, 275
MmeI TCCRAC 2 cut(s) 183, 409
MseI TTAA 4 cut(s) 81, 486, 536, 720
MspI CCGG 1 cut(s) 87
Mva1269I GAATGC 2 cut(s) 549, 785
MvnI CGCG 4 cut(s) 64, 66, 78, 236
MwoI GCNNNNNNNGC 2 cut(s) 362, 699
NdeII GATC 2 cut(s) 604, 921
NlaIII CATG 1 cut(s) 685
NlaIV GGNNCC 4 cut(s) 304, 340, 777, 814
NmeAIII GCCGAG 1 cut(s) 279
PauI GCGCGC 1 cut(s) 64
PciSI GCTCTTC 1 cut(s) 918
PcsI WCGNNNNNNNCGW 1 cut(s) 188
PctI GAATGC 2 cut(s) 549, 785
PfeI GAWTC 2 cut(s) 184, 200
PflFI GACNNNGTC 1 cut(s) 530
PflMI CCANNNNNTGG 1 cut(s) 471
PkrI GCNGC 5 cut(s) 238, 655, 745, 880, 1033
PleI GAGTC 5 cut(s) 142, 155, 173, 210, 274
PpsI GAGTC 5 cut(s) 142, 155, 173, 210, 274
PspFI CCCAGC 2 cut(s) 210, 1056
PspN4I GGNNCC 4 cut(s) 304, 340, 777, 814
PspPI GGNCC 2 cut(s) 4, 16
PsrI GAACNNNNNNTAC 2 cut(s) 94, 126
PsyI GACNNNGTC 1 cut(s) 530
PteI GCGCGC 1 cut(s) 64
RsaI GTAC 4 cut(s) 103, 340, 436, 706
RsaNI GTAC 4 cut(s) 102, 339, 435, 705
SapI GCTCTTC 1 cut(s) 918
SaqAI TTAA 4 cut(s) 81, 486, 536, 720
SatI GCNGC 5 cut(s) 237, 654, 744, 879, 1032
Sau3AI GATC 2 cut(s) 604, 921
Sau96I GGNCC 2 cut(s) 4, 16
ScaI AGTACT 1 cut(s) 706
SchI GAGTC 5 cut(s) 142, 155, 173, 210, 275
SduI GDGCHC 1 cut(s) 815
SfaNI GCATC 2 cut(s) 503, 583
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
Sse9I AATT 4 cut(s) 120, 367, 588, 768
SsiI CCGC 6 cut(s) 39, 236, 414, 942, 1031, 1034
SspI AATATT 1 cut(s) 509
SspMI CTAG 2 cut(s) 617, 830
TaaI ACNGT 4 cut(s) 427, 668, 761, 804
TaiI ACGT 3 cut(s) 138, 531, 638
TaqI TCGA 3 cut(s) 182, 191, 397
TasI AATT 4 cut(s) 120, 367, 588, 768
TatI WGTACW 3 cut(s) 101, 434, 704
TauI GCSGC 2 cut(s) 239, 1034
TfiI GAWTC 2 cut(s) 184, 200
Tru1I TTAA 4 cut(s) 81, 486, 536, 720
Tru9I TTAA 4 cut(s) 81, 486, 536, 720
TscAI CASTG 1 cut(s) 700
TseI GCWGC 3 cut(s) 653, 743, 878
TspDTI ATGAA 3 cut(s) 366, 749, 856
TspGWI ACGGA 2 cut(s) 240, 295
TspRI CASTG 1 cut(s) 700
Tth111I GACNNNGTC 1 cut(s) 530
Van91I CCANNNNNTGG 1 cut(s) 471
XapI RAATTY 1 cut(s) 367
XcmI CCANNNNNNNNNTGG 3 cut(s) 42, 468, 679
XmiI GTMKAC 1 cut(s) 756
XspI CTAG 2 cut(s) 617, 830
ZraI GACGTC 1 cut(s) 529
ZrmI AGTACT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.