Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006647

Physical Location & Seq

Genomic Coordinates Forward (+)

17286524 .. 17287969

Gene Structure 1446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g18220.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCTGTGGCGATGGTCTCAGCCGTGAGAGGCGGTCGTTTGCCGTCACTGCACCATCATCACCGCCGTCAGATGATTCTAAGCTCCACGTCGTCGTCGATTATTGGTAGTTGGGGTTCGTTAAAATCATTGAAGCAGCTCATTTGCAGCTCAAACTCAAGGGGTTTCACTCTCTTTGCCCGTTACTCACAAACTCAGGATCTTTACTCCTCCCGCCTTCAAGATAGGTTTGAAGACTCGCCTAAACTGGTGGAGGACATTCTCCAAACATCAGTAAGCACAGGTCCACGTGGCGCTCTTAGGATGGTCCAAGGTATTCAGGCGTTTATTGGGGTTGGTGGGGAGTGGCTTGCCGATGTATCAAAGTCAGCAAACTCATCTGCTGGATTACCAACCCAACTTCAGCTTGGATTGCTGTCCCCCCTTTATTTGAGGAAATTGTTTGATCGCATGGGGGCAACCTACATTAAGTTGGGTCAGTTCATTGCATCTGCTCCAACATTGTTCCCATCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

173

Amino Acids

18.74

Weight (kDa)

10.16

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05200
fragaria_vesca	FvH4_7g26150 FvH4_7g26150 FvH4_7g26150 FvH4_7g26150
malus_domestica	MD01G1169500.v1.1 MD07G1235400.v1.1
prunus_persica	Prupe.2G265700_v2.0.a1
pyrus_communis	pycom01g18220 pycom01g18230 pycom07g21290 pycom07g21300
rosa_chinensis	RchiOBHm_Chr1g0372581
rosa_laevigata	RLG00000026889
rosa_multiflora	Rmu_ssc0000419.1_g000011
rosa_roxburghii	Rroxscaffold_4G00284830
rosa_rugosa	Rorug01G0372900 Rorug01G0372900 Rorug01G0373000 Rorug01G0373100 Rorug01G0373200.1
rosa_samantha	Rh1AG381500 Rh1BG344900 Rh1CG358300 Rh1DG376100
rosa_wichuraiana	Rw1G033550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	33, 64, 214
AclWI	GGATC	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	386
AcvI	CACGTG	1 cut(s)	290
AgsI	TTSAA	3 cut(s)	133, 221, 233
AjiI	CACGTC	1 cut(s)	90
AluBI	AGCT	4 cut(s)	84, 139, 150, 406
AluI	AGCT	4 cut(s)	84, 139, 150, 406
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	1 cut(s)	207
ApeKI	GCWGC	2 cut(s)	136, 147
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	2 cut(s)	284, 307
AsuHPI	GGTGA	1 cut(s)	53
AvaII	GGWCC	2 cut(s)	284, 307
BbrPI	CACGTG	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	148, 159
BccI	CCATC	4 cut(s)	7, 63, 298, 517
BceAI	ACGGC	3 cut(s)	8, 28, 51
BcoDI	GTCTC	1 cut(s)	22
BfoI	RGCGCY	1 cut(s)	297
BisI	GCNGC	2 cut(s)	137, 148
BlsI	GCNGC	2 cut(s)	138, 149
Bme18I	GGWCC	2 cut(s)	284, 307
BmgBI	CACGTC	1 cut(s)	90
BmgT120I	GGNCC	2 cut(s)	284, 307
BmsI	GCATC	1 cut(s)	497
BpiI	GAAGAC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	142
BsaAI	YACGTR	1 cut(s)	290
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	1 cut(s)	310
Bse1I	ACTGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	483
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	1 cut(s)	309
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	2 cut(s)	33, 209
BseNI	ACTGG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	199
BseXI	GCAGC	2 cut(s)	148, 159
BsgI	GTGCAG	1 cut(s)	35
Bsh1285I	CGRYCG	1 cut(s)	37
BsiEI	CGRYCG	1 cut(s)	37
BslFI	GGGAC	1 cut(s)	403
BsmAI	GTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	403
Bso31I	GGTCTC	1 cut(s)	22
Bsp143I	GATC	2 cut(s)	199, 445
BspACI	CCGC	3 cut(s)	33, 64, 214
BspCNI	CTCAG	2 cut(s)	32, 208
BspPI	GGATC	1 cut(s)	207
BspTNI	GGTCTC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	2 cut(s)	199, 445
BssT1I	CCWWGG	1 cut(s)	310
BstBAI	YACGTR	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	4 cut(s)	19, 80, 195, 299
BstF5I	GGATG	1 cut(s)	309
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	2 cut(s)	202, 448
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	2 cut(s)	199, 445
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 412
BstV1I	GCAGC	2 cut(s)	148, 159
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BtgZI	GCGATG	1 cut(s)	26
BtrI	CACGTC	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	309
BtsI	GCAGTG	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	47
Cac8I	GCNNGC	1 cut(s)	351
CfoI	GCGC	1 cut(s)	296
Cfr13I	GGNCC	2 cut(s)	284, 307
CviAII	CATG	1 cut(s)	451
CviJI	RGCY	7 cut(s)	5, 23, 84, 139, 150, 349, 406
CviKI_1	RGCY	7 cut(s)	5, 23, 84, 139, 150, 349, 406
DdeI	CTNAG	4 cut(s)	19, 80, 195, 299
DpnI	GATC	2 cut(s)	201, 447
DpnII	GATC	2 cut(s)	199, 445
Eco130I	CCWWGG	1 cut(s)	310
Eco31I	GGTCTC	1 cut(s)	22
Eco47I	GGWCC	2 cut(s)	284, 307
Eco57I	CTGAAG	1 cut(s)	386
Eco72I	CACGTG	1 cut(s)	290
EcoT14I	CCWWGG	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	1 cut(s)	454
FaiI	YATR	1 cut(s)	452
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	1 cut(s)	450
FauI	CCCGC	1 cut(s)	221
Fnu4HI	GCNGC	2 cut(s)	137, 148
FokI	GGATG	1 cut(s)	316
Fsp4HI	GCNGC	2 cut(s)	137, 148
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	2 cut(s)	137, 148
HaeII	RGCGCY	1 cut(s)	297
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	1 cut(s)	454
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HinfI	GANTC	2 cut(s)	76, 236
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	2 cut(s)	72, 514
Hpy188III	TCNNGA	2 cut(s)	197, 221
Hpy8I	GTNNAC	1 cut(s)	287
Hpy99I	CGWCG	3 cut(s)	94, 97, 100
HpyAV	CCTTC	1 cut(s)	227
HpyCH4IV	ACGT	2 cut(s)	89, 289
HpyCH4V	TGCA	3 cut(s)	52, 147, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 412
HpyF3I	CTNAG	4 cut(s)	19, 80, 195, 299
HpySE526I	ACGT	2 cut(s)	89, 289
Hsp92II	CATG	1 cut(s)	454
HspAI	GCGC	1 cut(s)	294
Kzo9I	GATC	2 cut(s)	199, 445
LmnI	GCTCC	2 cut(s)	89, 499
LpnPI	CCDG	5 cut(s)	182, 233, 267, 305, 369
Lsp1109I	GCAGC	2 cut(s)	148, 159
LweI	GCATC	1 cut(s)	497
MaeII	ACGT	2 cut(s)	89, 289
MaeIII	GTNAC	2 cut(s)	45, 182
MalI	GATC	2 cut(s)	201, 447
MboI	GATC	2 cut(s)	199, 445
MboII	GAAGA	1 cut(s)	245
MflI	RGATCY	1 cut(s)	199
MluCI	AATT	1 cut(s)	437
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	4 cut(s)	23, 220, 247, 426
MseI	TTAA	2 cut(s)	122, 468
MwoI	GCNNNNNNNGC	2 cut(s)	49, 412
NdeII	GATC	2 cut(s)	199, 445
NlaIII	CATG	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	138, 149
PleI	GAGTC	1 cut(s)	230
PmaCI	CACGTG	1 cut(s)	290
PmlI	CACGTG	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	230
Ppu21I	YACGTR	1 cut(s)	290
PspCI	CACGTG	1 cut(s)	290
PspPI	GGNCC	2 cut(s)	284, 307
PsrI	GAACNNNNNNTAC	2 cut(s)	100, 132
PsuI	RGATCY	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	122, 468
SatI	GCNGC	2 cut(s)	137, 148
Sau3AI	GATC	2 cut(s)	199, 445
Sau96I	GGNCC	2 cut(s)	284, 307
SchI	GAGTC	1 cut(s)	230
SfaNI	GCATC	1 cut(s)	497
SinI	GGWCC	2 cut(s)	284, 307
SmlI	CTYRAG	1 cut(s)	157
SmoI	CTYRAG	1 cut(s)	157
Sse9I	AATT	1 cut(s)	437
SsiI	CCGC	3 cut(s)	33, 64, 214
StyI	CCWWGG	1 cut(s)	310
TaiI	ACGT	2 cut(s)	92, 292
TaqI	TCGA	1 cut(s)	98
TasI	AATT	1 cut(s)	437
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	2 cut(s)	122, 468
Tru9I	TTAA	2 cut(s)	122, 468
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	45
TseI	GCWGC	2 cut(s)	136, 147
Tsp45I	GTSAC	1 cut(s)	45
TspDTI	ATGAA	1 cut(s)	472
TspRI	CASTG	1 cut(s)	54
VpaK11BI	GGWCC	2 cut(s)	284, 307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.