Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006647

Physical Location & Seq

Genomic Coordinates Forward (+)

17288278 .. 17290370

Gene Structure 2093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g18230.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTTGGTTGCAGATCTCAATTTTATCTACGTTGTTTTCCGTATTTTGGAATTCTTGAATCCTGATATAAACCGTGCTTCATTGGTTGGTATTGTGCAAGATATACGGAAGTCCATGCTTGAAGAAGTTGATTTCTACAAGGAGGCTGCAAACGTTGAGTCCTTTAGGAGATATTTAGAAGCTATGGGACTCACAAGGCAGGCTACGGCTCCAAAAGTGTATCACCAATGCAGCAGCAAACGAATTTTAACAATGGAGAGGCTGTATGGAGTTCCTCGTACTGACTTGAACAGTATAAGTTCCTTTGTTTCTAATCCGGAGACCAGTCTCATAACTGCCCTTAATGTGTGGTTTGGCAGTTTGCTTGCCTGTGAAAGCTTCCATGCAGATGTGCATGCAGGCAATCTGTGGTTGTTGCGTGATGGCCGCATTGGGTTTCTTGATTTTGGAATCGTTGGCCGTATATCTCCAAAAACATTGGGTGCCATGGAAATCTTTCTGGCATCAATTGCAACTGAAGAATATGAATCAATGGCATCCGCACTGATTGAAATGGGTGCTACAGGCACAAATGTTGATGTTAAGGCTTTTGCAAGTGACTTGGAAAAGATGTTCTCGTCAATAAAGGATTTGGATACAGAAGTAGTCATAGCAATTGCCAGGGAGCCATCTACAAATGCAACTGCTGTCTCAGCAAATCTAGTTGTTGATGAGAGACAAATGAATGCACTTTTTCTCGATGTGATTCGGGTTAGTGAATCATATGGATTGAAATTTCCTCAAGAGTTTGCACTTCTCCTGAAGCAGCTTTTGTATTTTGACCGGTACACCCATTTGTTGGCCCCGGACTTGAATATGCTCCAAGACCAAAGGATTTCCATCGCTTCTAATCGGAGAACCAACTACAGGAACGATTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

308

Amino Acids

34.64

Weight (kDa)

5.27

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05200
fragaria_vesca	FvH4_7g26150 FvH4_7g26150 FvH4_7g26150 FvH4_7g26150
malus_domestica	MD01G1169500.v1.1 MD07G1235400.v1.1
prunus_persica	Prupe.2G265700_v2.0.a1
pyrus_communis	pycom01g18220 pycom01g18230 pycom07g21290 pycom07g21300
rosa_chinensis	RchiOBHm_Chr1g0372581
rosa_laevigata	RLG00000026889
rosa_multiflora	Rmu_ssc0000419.1_g000011
rosa_roxburghii	Rroxscaffold_4G00284830
rosa_rugosa	Rorug01G0372900 Rorug01G0372900 Rorug01G0373000 Rorug01G0373100 Rorug01G0373200.1
rosa_samantha	Rh1AG381500 Rh1BG344900 Rh1CG358300 Rh1DG376100
rosa_wichuraiana	Rw1G033550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	482
AccB7I	CCANNNNNTGG	1 cut(s)	838
AccIII	TCCGGA	1 cut(s)	316
AciI	CCGC	2 cut(s)	427, 540
AclI	AACGTT	1 cut(s)	153
AcoI	YGGCCR	2 cut(s)	424, 457
AcsI	RAATTY	3 cut(s)	50, 243, 773
AcuI	CTGAAG	2 cut(s)	537, 821
AfaI	GTAC	2 cut(s)	280, 827
AfiI	CCNNNNNNNGG	3 cut(s)	46, 838, 906
AgeI	ACCGGT	1 cut(s)	822
AgsI	TTSAA	6 cut(s)	58, 122, 289, 551, 772, 853
AjnI	CCWGG	1 cut(s)	659
AloI	GAACNNNNNNTCC	2 cut(s)	596, 628
AluBI	AGCT	3 cut(s)	182, 378, 808
AluI	AGCT	3 cut(s)	182, 378, 808
Alw26I	GTCTC	4 cut(s)	314, 332, 694, 709
Aor13HI	TCCGGA	1 cut(s)	316
AoxI	GGCC	3 cut(s)	424, 457, 840
ApeKI	GCWGC	4 cut(s)	146, 231, 234, 805
ApoI	RAATTY	3 cut(s)	50, 243, 773
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AsiGI	ACCGGT	1 cut(s)	822
Asp700I	GAANNNNTTC	2 cut(s)	495, 914
AspS9I	GGNCC	1 cut(s)	841
AsuC2I	CCSGG	1 cut(s)	845
AsuHPI	GGTGA	1 cut(s)	215
BaeI	ACNNNNGTAYC	2 cut(s)	627, 660
BanI	GGYRCC	1 cut(s)	482
BbvI	GCAGC	4 cut(s)	133, 243, 246, 817
BccI	CCATC	3 cut(s)	416, 676, 887
BceAI	ACGGC	2 cut(s)	222, 444
BciT130I	CCWGG	1 cut(s)	661
BciVI	GTATCC	1 cut(s)	628
BcnI	CCSGG	1 cut(s)	845
BcoDI	GTCTC	4 cut(s)	314, 332, 694, 709
BfaI	CTAG	1 cut(s)	701
BfmI	CTRYAG	2 cut(s)	561, 904
BfuI	GTATCC	1 cut(s)	628
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	5 cut(s)	147, 232, 235, 427, 806
BlsI	GCNGC	5 cut(s)	148, 233, 236, 428, 807
Bme1390I	CCNGG	2 cut(s)	661, 845
BmgT120I	GGNCC	1 cut(s)	841
BmiI	GGNNCC	4 cut(s)	210, 484, 666, 843
BmrFI	CCNGG	2 cut(s)	661, 845
BmsI	GCATC	2 cut(s)	512, 545
BpuEI	CTTGAG	1 cut(s)	765
BpuMI	CCSGG	1 cut(s)	845
BsaBI	GATNNNNATC	1 cut(s)	878
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	3 cut(s)	486, 660, 843
BsaWI	WCCGGW	2 cut(s)	316, 822
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 838, 906
Bse118I	RCCGGY	1 cut(s)	822
Bse1I	ACTGG	1 cut(s)	324
Bse8I	GATNNNNATC	1 cut(s)	878
BseAI	TCCGGA	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	661
BseDI	CCNNGG	3 cut(s)	486, 660, 843
BseGI	GGATG	1 cut(s)	536
BseJI	GATNNNNATC	1 cut(s)	878
BseLI	CCNNNNNNNGG	3 cut(s)	46, 838, 906
BseMII	CTCAG	1 cut(s)	705
BseNI	ACTGG	1 cut(s)	324
BseXI	GCAGC	4 cut(s)	133, 243, 246, 817
BshFI	GGCC	3 cut(s)	426, 459, 842
BshNI	GGYRCC	1 cut(s)	482
BshTI	ACCGGT	1 cut(s)	822
BsiSI	CCGG	3 cut(s)	317, 823, 845
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	3 cut(s)	46, 838, 906
BsmAI	GTCTC	4 cut(s)	314, 332, 694, 709
BsmFI	GGGAC	1 cut(s)	201
BsmI	GAATGC	1 cut(s)	730
BsnI	GGCC	3 cut(s)	426, 459, 842
Bso31I	GGTCTC	1 cut(s)	314
Bsp13I	TCCGGA	1 cut(s)	316
Bsp143I	GATC	1 cut(s)	13
Bsp19I	CCATGG	1 cut(s)	486
BspACI	CCGC	2 cut(s)	427, 540
BspANI	GGCC	3 cut(s)	426, 459, 842
BspCNI	CTCAG	1 cut(s)	704
BspEI	TCCGGA	1 cut(s)	316
BspLI	GGNNCC	4 cut(s)	210, 484, 666, 843
BspT107I	GGYRCC	1 cut(s)	482
BspTNI	GGTCTC	1 cut(s)	314
BsrFI	RCCGGY	1 cut(s)	822
BsrI	ACTGG	1 cut(s)	324
BssAI	RCCGGY	1 cut(s)	822
BssECI	CCNNGG	3 cut(s)	486, 660, 843
BssMI	GATC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	661
Bst4CI	ACNGT	2 cut(s)	74, 293
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstC8I	GCNNGC	4 cut(s)	201, 366, 396, 400
BstDEI	CTNAG	1 cut(s)	691
BstDSI	CCRYGG	1 cut(s)	486
BstF5I	GGATG	1 cut(s)	536
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	4 cut(s)	314, 332, 694, 709
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	2 cut(s)	509, 692
BstNI	CCWGG	1 cut(s)	661
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	2 cut(s)	659, 843
BstSFI	CTRYAG	2 cut(s)	561, 904
BstV1I	GCAGC	4 cut(s)	133, 243, 246, 817
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BsuI	GTATCC	1 cut(s)	628
BsuRI	GGCC	3 cut(s)	426, 459, 842
BtgI	CCRYGG	1 cut(s)	486
BtgZI	GCGATG	1 cut(s)	865
BtsCI	GGATG	1 cut(s)	536
BtsIMutI	CAGTG	1 cut(s)	542
Cac8I	GCNNGC	4 cut(s)	201, 366, 396, 400
Cfr10I	RCCGGY	1 cut(s)	822
Cfr13I	GGNCC	1 cut(s)	841
Csp6I	GTAC	2 cut(s)	279, 826
CspAI	ACCGGT	1 cut(s)	822
CviAII	CATG	4 cut(s)	115, 383, 395, 487
CviQI	GTAC	2 cut(s)	279, 826
DdeI	CTNAG	1 cut(s)	691
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
EaeI	YGGCCR	2 cut(s)	424, 457
Eco130I	CCWWGG	1 cut(s)	486
Eco31I	GGTCTC	1 cut(s)	314
Eco57I	CTGAAG	2 cut(s)	537, 821
EcoRI	GAATTC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	659
EcoT14I	CCWWGG	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	4 cut(s)	118, 386, 398, 490
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	4 cut(s)	114, 382, 394, 486
FauNDI	CATATG	1 cut(s)	763
Fnu4HI	GCNGC	5 cut(s)	147, 232, 235, 427, 806
FokI	GGATG	1 cut(s)	523
Fsp4HI	GCNGC	5 cut(s)	147, 232, 235, 427, 806
FspBI	CTAG	1 cut(s)	701
GluI	GCNGC	5 cut(s)	147, 232, 235, 427, 806
HaeIII	GGCC	3 cut(s)	426, 459, 842
HapII	CCGG	3 cut(s)	317, 823, 845
Hin1II	CATG	4 cut(s)	118, 386, 398, 490
HindIII	AAGCTT	1 cut(s)	376
HinfI	GANTC	7 cut(s)	58, 158, 189, 450, 527, 745, 758
HpaII	CCGG	3 cut(s)	317, 823, 845
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	828
Hpy188I	TCNGA	2 cut(s)	894, 920
Hpy188III	TCNNGA	7 cut(s)	55, 62, 317, 440, 737, 782, 799
Hpy8I	GTNNAC	1 cut(s)	828
HpyCH4III	ACNGT	2 cut(s)	74, 293
HpyCH4IV	ACGT	2 cut(s)	30, 153
HpyF10VI	GCNNNNNNNGC	2 cut(s)	509, 692
HpyF3I	CTNAG	1 cut(s)	691
HpySE526I	ACGT	2 cut(s)	30, 153
Hsp92II	CATG	4 cut(s)	118, 386, 398, 490
Kpn2I	TCCGGA	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	3 cut(s)	214, 664, 864
Lsp1109I	GCAGC	4 cut(s)	133, 243, 246, 817
LweI	GCATC	2 cut(s)	512, 545
MaeI	CTAG	1 cut(s)	701
MaeII	ACGT	2 cut(s)	30, 153
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	2 cut(s)	134, 530
MfeI	CAATTG	2 cut(s)	507, 654
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	6 cut(s)	19, 50, 243, 507, 654, 773
MlyI	GAGTC	2 cut(s)	167, 183
MnlI	CCTC	4 cut(s)	136, 252, 285, 789
MroI	TCCGGA	1 cut(s)	316
MroXI	GAANNNNTTC	2 cut(s)	495, 914
MseI	TTAA	3 cut(s)	248, 342, 582
MslI	CAYNNNNRTG	1 cut(s)	387
MspI	CCGG	3 cut(s)	317, 823, 845
MspR9I	CCNGG	2 cut(s)	661, 845
MunI	CAATTG	2 cut(s)	507, 654
Mva1269I	GAATGC	1 cut(s)	730
MvaI	CCWGG	1 cut(s)	661
MwoI	GCNNNNNNNGC	2 cut(s)	509, 692
NciI	CCSGG	1 cut(s)	845
NcoI	CCATGG	1 cut(s)	486
NdeI	CATATG	1 cut(s)	763
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	4 cut(s)	118, 386, 398, 490
NlaIV	GGNNCC	4 cut(s)	210, 484, 666, 843
NmuCI	GTSAC	1 cut(s)	596
NspI	RCATGY	1 cut(s)	398
PaeI	GCATGC	1 cut(s)	398
PctI	GAATGC	1 cut(s)	730
PdmI	GAANNNNTTC	2 cut(s)	495, 914
PfeI	GAWTC	5 cut(s)	58, 450, 527, 745, 758
PflMI	CCANNNNNTGG	1 cut(s)	838
PinAI	ACCGGT	1 cut(s)	822
PkrI	GCNGC	5 cut(s)	148, 233, 236, 428, 807
PleI	GAGTC	2 cut(s)	166, 183
PpsI	GAGTC	2 cut(s)	166, 183
Psp1406I	AACGTT	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	659
PspGI	CCWGG	1 cut(s)	659
PspN4I	GGNNCC	4 cut(s)	210, 484, 666, 843
PspPI	GGNCC	1 cut(s)	841
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	2 cut(s)	280, 827
RsaNI	GTAC	2 cut(s)	279, 826
RseI	CAYNNNNRTG	1 cut(s)	387
SaqAI	TTAA	3 cut(s)	248, 342, 582
SatI	GCNGC	5 cut(s)	147, 232, 235, 427, 806
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	1 cut(s)	841
SchI	GAGTC	2 cut(s)	167, 183
ScrFI	CCNGG	2 cut(s)	661, 845
SetI	ASST	5 cut(s)	33, 156, 184, 380, 810
SfaNI	GCATC	2 cut(s)	512, 545
SfcI	CTRYAG	2 cut(s)	561, 904
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	780
SmoI	CTYRAG	1 cut(s)	780
SphI	GCATGC	1 cut(s)	398
Sse9I	AATT	6 cut(s)	19, 50, 243, 507, 654, 773
SsiI	CCGC	2 cut(s)	427, 540
SspMI	CTAG	1 cut(s)	701
StyD4I	CCNGG	2 cut(s)	659, 843
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	2 cut(s)	74, 293
TaiI	ACGT	2 cut(s)	33, 156
TaqI	TCGA	1 cut(s)	738
TasI	AATT	6 cut(s)	19, 50, 243, 507, 654, 773
TauI	GCSGC	1 cut(s)	429
TfiI	GAWTC	5 cut(s)	58, 450, 527, 745, 758
Tru1I	TTAA	3 cut(s)	248, 342, 582
Tru9I	TTAA	3 cut(s)	248, 342, 582
TscAI	CASTG	1 cut(s)	549
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	4 cut(s)	146, 231, 234, 805
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	3 cut(s)	69, 540, 737
TspGWI	ACGGA	2 cut(s)	29, 121
TspRI	CASTG	1 cut(s)	549
Van91I	CCANNNNNTGG	1 cut(s)	838
XapI	RAATTY	3 cut(s)	50, 243, 773
XceI	RCATGY	1 cut(s)	398
XmnI	GAANNNNTTC	2 cut(s)	495, 914
XspI	CTAG	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.