Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006647

Physical Location & Seq

Genomic Coordinates Forward (+)

23068546 .. 23070118

Gene Structure 1573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g21300.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGGACTCACAAGGCAGGCTACGGCTCCAAAAGTGTATCACCAATGCAGCAGCAAACGAGTTTTAACAATGGAGAGGCTGTACGGAGTTCCTCTTACTGACTTAAACAGTATAAGTTCCTTTGTCTCTAATCCGGAGACCAGTCTCATAACTGCCCTTAATGTGTGGTTTGGTAGTTTGCTTGCCTGTGAAAGCTTCCACGCAGATGTGCATGCAGGGAACCTGTGGTTGTTGCGCGATGGCCGCATTGGGTTTCTTGATTTTGGAATTGTTGGCCGTATATCCCCAAAAACATGGGGTGCCATGGAAATCTTTTTGGCATCAATTGCAGCTGAAGAATATGAATCAATGGCATCTGCGCTGATTGAAATGGGTGCTACAGACACAAATGTTGATACTAAGGCCTTTGCAAGAGACTTGGAAAAGATGTTCTCATCAATAAAGGATTTGGATACTGAAGTAGTCATAGCAACTGCCAGGGAGCCATCTACGAATGCAACTGCTGTCTCTGCTAATCTAGTTGTTGATGAGAGACAAATGAATGCACTTTTTCTCGATGTGATTCGGGTTAGTGAATCATATGGATTGAAATTTCCACGAGAGTTTGCACTTCTCCTGAAGCAGCTTTTGTATTTTGATCGATACACCCGTTTGTTGGCCCCGAACTTGAATATGCTCCAAGACCAAAGGATTTCCATCGCTTCTAATCGAAGAACCAACTACAGGAACAATTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

247

Amino Acids

27.62

Weight (kDa)

6.33

Isoelectric Point (pI)

28.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05200
fragaria_vesca	FvH4_7g26150 FvH4_7g26150 FvH4_7g26150 FvH4_7g26150
malus_domestica	MD01G1169500.v1.1 MD07G1235400.v1.1
prunus_persica	Prupe.2G265700_v2.0.a1
pyrus_communis	pycom01g18220 pycom01g18230 pycom07g21290 pycom07g21300
rosa_chinensis	RchiOBHm_Chr1g0372581
rosa_laevigata	RLG00000026889
rosa_multiflora	Rmu_ssc0000419.1_g000011
rosa_roxburghii	Rroxscaffold_4G00284830
rosa_rugosa	Rorug01G0372900 Rorug01G0372900 Rorug01G0373000 Rorug01G0373100 Rorug01G0373200.1
rosa_samantha	Rh1AG381500 Rh1BG344900 Rh1CG358300 Rh1DG376100
rosa_wichuraiana	Rw1G033550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	299
AccII	CGCG	1 cut(s)	237
AccIII	TCCGGA	1 cut(s)	133
AciI	CCGC	1 cut(s)	244
AcoI	YGGCCR	2 cut(s)	241, 274
AcsI	RAATTY	1 cut(s)	590
AcuI	CTGAAG	3 cut(s)	354, 477, 638
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	2 cut(s)	655, 723
AgsI	TTSAA	3 cut(s)	368, 589, 670
AjnI	CCWGG	1 cut(s)	476
AloI	GAACNNNNNNTCC	2 cut(s)	413, 445
AluBI	AGCT	3 cut(s)	195, 332, 625
AluI	AGCT	3 cut(s)	195, 332, 625
Alw26I	GTCTC	6 cut(s)	130, 131, 149, 408, 511, 526
Aor13HI	TCCGGA	1 cut(s)	133
AoxI	GGCC	4 cut(s)	241, 274, 402, 657
ApeKI	GCWGC	4 cut(s)	48, 51, 329, 622
ApoI	RAATTY	1 cut(s)	590
Asp700I	GAANNNNTTC	1 cut(s)	731
AspLEI	GCGC	2 cut(s)	237, 361
AspS9I	GGNCC	1 cut(s)	658
AsuHPI	GGTGA	1 cut(s)	32
BaeI	ACNNNNGTAYC	4 cut(s)	444, 477, 634, 667
BanI	GGYRCC	1 cut(s)	299
BauI	CACGAG	1 cut(s)	597
BbvI	GCAGC	4 cut(s)	60, 63, 341, 634
BccI	CCATC	3 cut(s)	233, 493, 704
BceAI	ACGGC	2 cut(s)	39, 261
BciT130I	CCWGG	1 cut(s)	478
BciVI	GTATCC	1 cut(s)	445
BcoDI	GTCTC	6 cut(s)	130, 131, 149, 408, 511, 526
BfaI	CTAG	1 cut(s)	518
BfmI	CTRYAG	2 cut(s)	378, 721
BfuI	GTATCC	1 cut(s)	445
BisI	GCNGC	5 cut(s)	49, 52, 244, 330, 623
BlsI	GCNGC	5 cut(s)	50, 53, 245, 331, 624
Bme1390I	CCNGG	1 cut(s)	478
BmgT120I	GGNCC	1 cut(s)	658
BmiI	GGNNCC	5 cut(s)	27, 221, 301, 483, 660
BmrFI	CCNGG	1 cut(s)	478
BmsI	GCATC	2 cut(s)	329, 362
Bsa29I	ATCGAT	1 cut(s)	640
BsaBI	GATNNNNATC	1 cut(s)	695
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	303, 477
BsaWI	WCCGGW	1 cut(s)	133
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	2 cut(s)	655, 723
Bse1I	ACTGG	1 cut(s)	141
Bse8I	GATNNNNATC	1 cut(s)	695
BseAI	TCCGGA	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	478
BseCI	ATCGAT	1 cut(s)	640
BseDI	CCNNGG	2 cut(s)	303, 477
BseJI	GATNNNNATC	1 cut(s)	695
BseLI	CCNNNNNNNGG	2 cut(s)	655, 723
BseNI	ACTGG	1 cut(s)	141
BseXI	GCAGC	4 cut(s)	60, 63, 341, 634
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	4 cut(s)	243, 276, 404, 659
BshNI	GGYRCC	1 cut(s)	299
BshVI	ATCGAT	1 cut(s)	640
BsiSI	CCGG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	655, 723
BsmAI	GTCTC	6 cut(s)	130, 131, 149, 408, 511, 526
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	2 cut(s)	499, 547
BsnI	GGCC	4 cut(s)	243, 276, 404, 659
Bso31I	GGTCTC	1 cut(s)	131
Bsp13I	TCCGGA	1 cut(s)	133
Bsp143I	GATC	1 cut(s)	637
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	4 cut(s)	243, 276, 404, 659
BspDI	ATCGAT	1 cut(s)	640
BspEI	TCCGGA	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	5 cut(s)	27, 221, 301, 483, 660
BspT107I	GGYRCC	1 cut(s)	299
BspTNI	GGTCTC	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	141
BssECI	CCNNGG	2 cut(s)	303, 477
BssMI	GATC	1 cut(s)	637
BssSI	CACGAG	1 cut(s)	597
BssT1I	CCWWGG	1 cut(s)	303
Bst2BI	CACGAG	1 cut(s)	597
Bst2UI	CCWGG	1 cut(s)	478
Bst4CI	ACNGT	1 cut(s)	110
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstC8I	GCNNGC	3 cut(s)	18, 183, 213
BstDEI	CTNAG	1 cut(s)	399
BstDSI	CCRYGG	1 cut(s)	303
BstFNI	CGCG	1 cut(s)	237
BstHHI	GCGC	2 cut(s)	237, 361
BstKTI	GATC	1 cut(s)	640
BstMAI	GTCTC	6 cut(s)	130, 131, 149, 408, 511, 526
BstMBI	GATC	1 cut(s)	637
BstMWI	GCNNNNNNNGC	3 cut(s)	243, 326, 509
BstNI	CCWGG	1 cut(s)	478
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	476
BstSFI	CTRYAG	2 cut(s)	378, 721
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	4 cut(s)	60, 63, 341, 634
BstXI	CCANNNNNNTGG	1 cut(s)	294
Bsu15I	ATCGAT	1 cut(s)	640
BsuI	GTATCC	1 cut(s)	445
BsuRI	GGCC	4 cut(s)	243, 276, 404, 659
BsuTUI	ATCGAT	1 cut(s)	640
BtgI	CCRYGG	1 cut(s)	303
BtgZI	GCGATG	2 cut(s)	252, 682
Cac8I	GCNNGC	3 cut(s)	18, 183, 213
CfoI	GCGC	2 cut(s)	237, 361
Cfr13I	GGNCC	1 cut(s)	658
ClaI	ATCGAT	1 cut(s)	640
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	3 cut(s)	212, 294, 304
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	1 cut(s)	639
DpnII	GATC	1 cut(s)	637
EaeI	YGGCCR	2 cut(s)	241, 274
Eco130I	CCWWGG	1 cut(s)	303
Eco147I	AGGCCT	1 cut(s)	404
Eco31I	GGTCTC	1 cut(s)	131
Eco57I	CTGAAG	3 cut(s)	354, 477, 638
EcoRII	CCWGG	1 cut(s)	476
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	3 cut(s)	215, 297, 307
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	3 cut(s)	211, 293, 303
FauNDI	CATATG	1 cut(s)	580
Fnu4HI	GCNGC	5 cut(s)	49, 52, 244, 330, 623
Fsp4HI	GCNGC	5 cut(s)	49, 52, 244, 330, 623
FspBI	CTAG	1 cut(s)	518
GlaI	GCGC	2 cut(s)	236, 360
GluI	GCNGC	5 cut(s)	49, 52, 244, 330, 623
HaeIII	GGCC	4 cut(s)	243, 276, 404, 659
HapII	CCGG	1 cut(s)	134
HhaI	GCGC	2 cut(s)	237, 361
Hin1II	CATG	3 cut(s)	215, 297, 307
Hin6I	GCGC	2 cut(s)	235, 359
HinP1I	GCGC	2 cut(s)	235, 359
HindIII	AAGCTT	1 cut(s)	193
HinfI	GANTC	4 cut(s)	6, 344, 562, 575
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	737
Hpy188III	TCNNGA	4 cut(s)	134, 257, 554, 616
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4V	TGCA	8 cut(s)	48, 211, 215, 329, 410, 497, 545, 608
HpyF10VI	GCNNNNNNNGC	3 cut(s)	243, 326, 509
HpyF3I	CTNAG	1 cut(s)	399
Hsp92II	CATG	3 cut(s)	215, 297, 307
HspAI	GCGC	2 cut(s)	235, 359
Kpn2I	TCCGGA	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	637
LmnI	GCTCC	3 cut(s)	31, 481, 681
Lsp1109I	GCAGC	4 cut(s)	60, 63, 341, 634
LweI	GCATC	2 cut(s)	329, 362
MaeI	CTAG	1 cut(s)	518
MalI	GATC	1 cut(s)	639
MboI	GATC	1 cut(s)	637
MboII	GAAGA	2 cut(s)	347, 723
MfeI	CAATTG	1 cut(s)	324
MluCI	AATT	4 cut(s)	267, 324, 590, 730
MnlI	CCTC	2 cut(s)	69, 102
MroI	TCCGGA	1 cut(s)	133
MroXI	GAANNNNTTC	1 cut(s)	731
MseI	TTAA	3 cut(s)	65, 104, 159
MslI	CAYNNNNRTG	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	478
MunI	CAATTG	1 cut(s)	324
Mva1269I	GAATGC	2 cut(s)	499, 547
MvaI	CCWGG	1 cut(s)	478
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	3 cut(s)	243, 326, 509
NcoI	CCATGG	1 cut(s)	303
NdeI	CATATG	1 cut(s)	580
NdeII	GATC	1 cut(s)	637
NlaIII	CATG	3 cut(s)	215, 297, 307
NlaIV	GGNNCC	5 cut(s)	27, 221, 301, 483, 660
NspI	RCATGY	1 cut(s)	215
PaeI	GCATGC	1 cut(s)	215
PceI	AGGCCT	1 cut(s)	404
PcsI	WCGNNNNNNNCGW	1 cut(s)	646
PctI	GAATGC	2 cut(s)	499, 547
PdmI	GAANNNNTTC	1 cut(s)	731
PfeI	GAWTC	3 cut(s)	344, 562, 575
PkrI	GCNGC	5 cut(s)	50, 53, 245, 331, 624
Psp6I	CCWGG	1 cut(s)	476
PspGI	CCWGG	1 cut(s)	476
PspN4I	GGNNCC	5 cut(s)	27, 221, 301, 483, 660
PspPI	GGNCC	1 cut(s)	658
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	3 cut(s)	65, 104, 159
SatI	GCNGC	5 cut(s)	49, 52, 244, 330, 623
Sau3AI	GATC	1 cut(s)	637
Sau96I	GGNCC	1 cut(s)	658
ScrFI	CCNGG	1 cut(s)	478
SetI	ASST	4 cut(s)	197, 225, 334, 627
SfaNI	GCATC	2 cut(s)	329, 362
SfcI	CTRYAG	2 cut(s)	378, 721
SmiMI	CAYNNNNRTG	1 cut(s)	204
SphI	GCATGC	1 cut(s)	215
Sse9I	AATT	4 cut(s)	267, 324, 590, 730
SseBI	AGGCCT	1 cut(s)	404
SsiI	CCGC	1 cut(s)	244
SspMI	CTAG	1 cut(s)	518
StuI	AGGCCT	1 cut(s)	404
StyD4I	CCNGG	1 cut(s)	476
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	110
TaqI	TCGA	3 cut(s)	555, 640, 709
TasI	AATT	4 cut(s)	267, 324, 590, 730
TauI	GCSGC	1 cut(s)	246
TfiI	GAWTC	3 cut(s)	344, 562, 575
Tru1I	TTAA	3 cut(s)	65, 104, 159
Tru9I	TTAA	3 cut(s)	65, 104, 159
TseI	GCWGC	4 cut(s)	48, 51, 329, 622
TspDTI	ATGAA	2 cut(s)	357, 554
TspGWI	ACGGA	1 cut(s)	99
XapI	RAATTY	1 cut(s)	590
XceI	RCATGY	1 cut(s)	215
XmnI	GAANNNNTTC	1 cut(s)	731
XspI	CTAG	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.