Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006647

Physical Location & Seq

Genomic Coordinates Forward (+)

23066404 .. 23067991

Gene Structure 1588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g21290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCTGTTTCGATGGTCTCAGCCGTGAGAGGCGGTCGTTTGCCGGCACTTCACCGTCATCACGGCCGTCAGATGATTCTGAGCTCCTCCTCCTCGTCGATTATTGGTAGTTGGGGTTCGTTAAAATCATCGAAGCAGCTTAATTGCAGCTCAAACTCAAAGGGCTTCACTCTCTTTGCCCGTTACTCTCAAGCTCAGGATATTTACTCCTCCCGCCTTCAAGATAGGTTCGAAGACTTGCCTAAACTGGTGGAGGACATTCTCAAAACGTCAGTAAGCACAGGTCCTCGCGGCGCTCTTAGGATGGTGCAAGGTATTCAGGCGTTTATTGGGGTTGGTGGGGAGTGGCTTGCCGACGTATCAAAGTCAGCAAACTCATCTGCCGGATTACCAACCCAACTGCAGCTTGGATTGCTGTCCCCCCTTTATTTGAGGAGATTGTTTGAGCGCATGGGGGCAACCTACGTTAAGTTGGGTCAGTTCATTGCGTCTGCACCAACATTGTTCCCACCAGAATATGTTGAAGAATTTCAGAACTGCTTTGACAGAACTCCCGCAGTACCCTTTGCGGAGATTCAAGCAATCTTGCGACAAGAATTGGGAAGACCAATTGACAGTGTTTATGAATATGTTGACCCAACCCCGCTTGCTTCAGCCTCAATAGCACAAGTTCATGCTGCAAGGCTAAGAGGCTCCCAAGAAGATGTAGTTATAAAGATCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

242

Amino Acids

26.36

Weight (kDa)

9.32

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC1	PF03109	182 - 240	1.3e-15	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05200
fragaria_vesca	FvH4_7g26150 FvH4_7g26150 FvH4_7g26150 FvH4_7g26150
malus_domestica	MD01G1169500.v1.1 MD07G1235400.v1.1
prunus_persica	Prupe.2G265700_v2.0.a1
pyrus_communis	pycom01g18220 pycom01g18230 pycom07g21290 pycom07g21300
rosa_chinensis	RchiOBHm_Chr1g0372581
rosa_laevigata	RLG00000026889
rosa_multiflora	Rmu_ssc0000419.1_g000011
rosa_roxburghii	Rroxscaffold_4G00284830
rosa_rugosa	Rorug01G0372900 Rorug01G0372900 Rorug01G0373000 Rorug01G0373100 Rorug01G0373200.1
rosa_samantha	Rh1AG381500 Rh1BG344900 Rh1CG358300 Rh1DG376100
rosa_wichuraiana	Rw1G033550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	713
AccII	CGCG	1 cut(s)	291
AciI	CCGC	6 cut(s)	33, 214, 291, 555, 569, 644
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	527
AcuI	CTGAAG	1 cut(s)	636
AfaI	GTAC	1 cut(s)	561
AgsI	TTSAA	3 cut(s)	221, 524, 578
AluBI	AGCT	5 cut(s)	84, 139, 150, 194, 406
AluI	AGCT	5 cut(s)	84, 139, 150, 194, 406
Alw21I	GWGCWC	1 cut(s)	86
Alw26I	GTCTC	1 cut(s)	22
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	4 cut(s)	136, 147, 403, 677
ApoI	RAATTY	1 cut(s)	527
Asp700I	GAANNNNTTC	1 cut(s)	528
AspLEI	GCGC	2 cut(s)	296, 450
AspS9I	GGNCC	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	44
AsuII	TTCGAA	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	86
BbsI	GAAGAC	2 cut(s)	240, 610
Bbv12I	GWGCWC	1 cut(s)	86
BbvI	GCAGC	4 cut(s)	148, 159, 415, 664
BccI	CCATC	2 cut(s)	7, 298
BceAI	ACGGC	3 cut(s)	8, 51, 79
BcoDI	GTCTC	1 cut(s)	22
BfmI	CTRYAG	1 cut(s)	401
BfoI	RGCGCY	1 cut(s)	297
BglII	AGATCT	1 cut(s)	717
BisI	GCNGC	5 cut(s)	137, 148, 292, 404, 678
BlsI	GCNGC	5 cut(s)	138, 149, 293, 405, 679
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	284
BmiI	GGNNCC	1 cut(s)	694
BpiI	GAAGAC	2 cut(s)	240, 610
Bpu10I	CCTNAGC	1 cut(s)	195
Bpu14I	TTCGAA	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	22
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	483
BseGI	GGATG	1 cut(s)	309
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	3 cut(s)	33, 71, 209
BseNI	ACTGG	1 cut(s)	252
BseRI	GAGGAG	5 cut(s)	76, 79, 82, 199, 448
BseX3I	CGGCCG	1 cut(s)	64
BseXI	GCAGC	4 cut(s)	148, 159, 415, 664
BsgI	GTGCAG	1 cut(s)	477
Bsh1236I	CGCG	1 cut(s)	291
Bsh1285I	CGRYCG	2 cut(s)	37, 67
BshFI	GGCC	1 cut(s)	66
BsiEI	CGRYCG	2 cut(s)	37, 67
BsiHKAI	GWGCWC	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	44, 384
BslFI	GGGAC	1 cut(s)	403
BsmAI	GTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	66
Bso31I	GGTCTC	1 cut(s)	22
Bsp119I	TTCGAA	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	717
BspACI	CCGC	6 cut(s)	33, 214, 291, 555, 569, 644
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	3 cut(s)	32, 72, 208
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	1 cut(s)	694
BspMAI	CTGCAG	1 cut(s)	405
BspT104I	TTCGAA	1 cut(s)	231
BspTNI	GGTCTC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	483
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	252
BssAI	RCCGGY	1 cut(s)	43
BssMI	GATC	1 cut(s)	717
Bst4CI	ACNGT	2 cut(s)	56, 617
BstBI	TTCGAA	1 cut(s)	231
BstC8I	GCNNGC	3 cut(s)	45, 351, 648
BstDEI	CTNAG	5 cut(s)	19, 80, 195, 299, 686
BstF5I	GGATG	1 cut(s)	309
BstFNI	CGCG	1 cut(s)	291
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	2 cut(s)	296, 450
BstKTI	GATC	1 cut(s)	720
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	717
BstMCI	CGRYCG	2 cut(s)	37, 67
BstMWI	GCNNNNNNNGC	2 cut(s)	412, 662
BstSFI	CTRYAG	1 cut(s)	401
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	4 cut(s)	148, 159, 415, 664
BstV2I	GAAGAC	2 cut(s)	240, 610
BstX2I	RGATCY	1 cut(s)	717
BstYI	RGATCY	1 cut(s)	717
BstZI	CGGCCG	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	622
Cac8I	GCNNGC	3 cut(s)	45, 351, 648
CfoI	GCGC	2 cut(s)	296, 450
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	284
CseI	GACGC	1 cut(s)	477
Csp6I	GTAC	1 cut(s)	560
CviAII	CATG	2 cut(s)	451, 674
CviQI	GTAC	1 cut(s)	560
DdeI	CTNAG	5 cut(s)	19, 80, 195, 299, 686
DpnI	GATC	1 cut(s)	719
DpnII	GATC	1 cut(s)	717
EaeI	YGGCCR	1 cut(s)	64
EagI	CGGCCG	1 cut(s)	64
Ecl136II	GAGCTC	1 cut(s)	84
EclXI	CGGCCG	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	86
Eco31I	GGTCTC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	284
Eco52I	CGGCCG	1 cut(s)	64
Eco53kI	GAGCTC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	636
EcoICRI	GAGCTC	1 cut(s)	84
EcoO109I	RGGNCCY	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	86
FaeI	CATG	2 cut(s)	454, 677
FaiI	YATR	7 cut(s)	452, 519, 624, 630, 675, 713, 724
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	2 cut(s)	450, 673
FauI	CCCGC	3 cut(s)	221, 562, 651
Fnu4HI	GCNGC	5 cut(s)	137, 148, 292, 404, 678
FokI	GGATG	1 cut(s)	316
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	5 cut(s)	137, 148, 292, 404, 678
GlaI	GCGC	2 cut(s)	295, 449
GluI	GCNGC	5 cut(s)	137, 148, 292, 404, 678
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	2 cut(s)	44, 384
HgaI	GACGC	1 cut(s)	477
HhaI	GCGC	2 cut(s)	296, 450
Hin1II	CATG	2 cut(s)	454, 677
Hin6I	GCGC	2 cut(s)	294, 448
HinP1I	GCGC	2 cut(s)	294, 448
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HinfI	GANTC	2 cut(s)	76, 574
HpaII	CCGG	2 cut(s)	44, 384
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	634
Hpy188I	TCNGA	3 cut(s)	72, 81, 534
Hpy188III	TCNNGA	2 cut(s)	197, 221
Hpy8I	GTNNAC	1 cut(s)	634
Hpy99I	CGWCG	2 cut(s)	100, 359
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	2 cut(s)	56, 617
HpyCH4IV	ACGT	3 cut(s)	269, 357, 465
HpyCH4V	TGCA	5 cut(s)	147, 310, 403, 494, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	412, 662
HpyF3I	CTNAG	5 cut(s)	19, 80, 195, 299, 686
HpySE526I	ACGT	3 cut(s)	269, 357, 465
Hsp92II	CATG	2 cut(s)	454, 677
HspAI	GCGC	2 cut(s)	294, 448
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
Kzo9I	GATC	1 cut(s)	717
LmnI	GCTCC	2 cut(s)	89, 698
LpnPI	CCDG	7 cut(s)	57, 182, 233, 267, 305, 397, 525
Lsp1109I	GCAGC	4 cut(s)	148, 159, 415, 664
MaeII	ACGT	3 cut(s)	269, 357, 465
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	1 cut(s)	719
MboI	GATC	1 cut(s)	717
MboII	GAAGA	4 cut(s)	245, 536, 615, 713
MfeI	CAATTG	1 cut(s)	609
MflI	RGATCY	1 cut(s)	717
MhlI	GDGCHC	1 cut(s)	86
MluCI	AATT	4 cut(s)	142, 527, 596, 609
MroNI	GCCGGC	1 cut(s)	43
MroXI	GAANNNNTTC	1 cut(s)	528
MseI	TTAA	3 cut(s)	122, 141, 468
MspI	CCGG	2 cut(s)	44, 384
MunI	CAATTG	1 cut(s)	609
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	412, 662
NaeI	GCCGGC	1 cut(s)	45
NdeII	GATC	1 cut(s)	717
NgoMIV	GCCGGC	1 cut(s)	43
NlaIII	CATG	2 cut(s)	454, 677
NlaIV	GGNNCC	1 cut(s)	694
NspV	TTCGAA	1 cut(s)	231
PdiI	GCCGGC	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	528
PfeI	GAWTC	2 cut(s)	76, 574
PkrI	GCNGC	5 cut(s)	138, 149, 293, 405, 679
PpuMI	RGGWCCY	1 cut(s)	284
PsiI	TTATAA	1 cut(s)	713
Psp124BI	GAGCTC	1 cut(s)	86
Psp5II	RGGWCCY	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	694
PspPI	GGNCC	1 cut(s)	284
PspPPI	RGGWCCY	1 cut(s)	284
PsrI	GAACNNNNNNTAC	2 cut(s)	100, 132
PstI	CTGCAG	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	717
RsaI	GTAC	1 cut(s)	561
RsaNI	GTAC	1 cut(s)	560
SacI	GAGCTC	1 cut(s)	86
SaqAI	TTAA	3 cut(s)	122, 141, 468
SatI	GCNGC	5 cut(s)	137, 148, 292, 404, 678
Sau3AI	GATC	1 cut(s)	717
Sau96I	GGNCC	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	86
SfcI	CTRYAG	1 cut(s)	401
SfuI	TTCGAA	1 cut(s)	231
SinI	GGWCC	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
Sse9I	AATT	4 cut(s)	142, 527, 596, 609
SsiI	CCGC	6 cut(s)	33, 214, 291, 555, 569, 644
SstI	GAGCTC	1 cut(s)	86
TaaI	ACNGT	2 cut(s)	56, 617
TaiI	ACGT	3 cut(s)	272, 360, 468
TaqI	TCGA	4 cut(s)	11, 98, 131, 231
TasI	AATT	4 cut(s)	142, 527, 596, 609
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	2 cut(s)	76, 574
Tru1I	TTAA	3 cut(s)	122, 141, 468
Tru9I	TTAA	3 cut(s)	122, 141, 468
TscAI	CASTG	1 cut(s)	622
TseI	GCWGC	4 cut(s)	136, 147, 403, 677
TspDTI	ATGAA	3 cut(s)	472, 639, 662
TspRI	CASTG	1 cut(s)	622
VpaK11BI	GGWCC	1 cut(s)	284
XapI	RAATTY	1 cut(s)	527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	404
XmnI	GAANNNNTTC	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.