Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006536

Physical Location & Seq

Genomic Coordinates Reverse (-)

21195924 .. 21198192

Gene Structure 2269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g24210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGATTTCAGAGAACACTTCTGGCTTTACAGAGGATGACTCTGATTCTTCTGAAACTGATACTTCCGAGTCCGAGTTGGATTCATCTGAGACCGAACCAGATATGGATGAAGACATGCCTTTACTTTCAGTACCAGAAGTGGGAAGATATGAAGCACAAGAACACAAAATCATGGTTGATGAGGAGCCTGATGAATTCTCGCATTCTGGTGATATGTCTCACCTCTATAGTCATGACTCTTTATTTGCTAGTGAAGCTGTTTCCAAATGGCAGTTGAAAGGGAAAAGGAATATCCGCAATCTTACGAAAAAGTCAGTGGATGCAACTTACGGCAAAGGCTATAATTATGGACCATATTCTGAAGAAAAGACTGAGTTTGTTGGACTGGAAGATGAATACTCCATGGCATCAAGAGCTGCAGCAAGAAGTCGAAACAGTGTTGGTCAGAATATGATTGATTGGGAGGACTGGACCTGGGAGGATAGGTCTGCTAGGAACGAGTATTGGGACATCAAAAGAGAACGTCTTCACCCGGTATATGATGGCCATCATCGTTATCACAGGAGGCCAAAATACTTGATAGATGTTGACTTGAAGGTCCAGGCAAGTTACCAAAAGGAGCCTGTTCCAATTGTTTCTCTGATGAGCAAGTTAAATGGGAAGGCAATAATAGGGCACCCAATCCAAATTGAAGCCTTAGAAGATGGGTCATCCAACTCGCTTCTTTCAACAGTTGATGAATTTGGTGAAGCAATTGACAATAATGGGGTTGTAACTCTTCCACATGCATGGAGGACAGCAAGGAGAACAGCAAATGTTCGAGTCCCACGCCCTCATTTATCATCTGCATTGGATGGTGATGAAACTGCTGACTACCTTCGCTTTTCAGATGAAGAAAGCAGACCACCATTTAAGAAATTAAATATAGGGAGCTTCAGTAACAAGGCAAGCCAGGGCAAAAGGAGCCTTCCTAACAACTCTCGGCTTCCCACTGATAGAAAGTTCTCAAAAAAAGCGGCCAAGAAAGTGATCCTATCGTCAAGCCAGAAAACGAGGACTATATCTTCAATACCCGTTGAACAGAATTTTAGTAACAAGCCTATACACCATGACAGCAGTAGTTATCAAAGGGATGGGCTGATCAAGCCGGAGTCTTCTGGGGCTGCTAAGACTGTAGCTTGCATACCTGTGAAATTAGTATTCAGTAGGTTACTTGAGAAGATCAATAGGCCGCCATCAAAAGCAGTTAGTACGGTTTTATTGAATAGCGAAAAGGGGAGAAATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWWP

Protein Analysis

430

Amino Acids

48.34

Weight (kDa)

5.96

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03140
fragaria_vesca	FvH4_7g33590 FvH4_7g33593 FvH4_7g33620
malus_domestica	MD01G1233800.v1.1 MD07G1305900.v1.1
prunus_persica	Prupe.2G324000_v2.0.a1 Prupe.2G324000_v2.0.a1 Prupe.2G324000_v2.0.a1 Prupe.2G324000_v2.0.a1 Prupe.2G324000_v2.0.a1 Prupe.2G324000_v2.0.a1
pyrus_communis	pycom01g24210 pycom07g27910
rosa_chinensis	RchiOBHm_Chr1g0383861
rosa_laevigata	RLG00000026090
rosa_multiflora	Rmu_co8472165.1_g000001 Rmu_sc0005139.1_g000032 Rmu_sc0012471.1_g000004
rosa_roxburghii	Rroxscaffold_4G00277190
rosa_rugosa	Rorug01G0442600
rosa_samantha	Rh1AG468600 Rh1BG426300 Rh1CG439000 Rh1DG459100
rosa_wichuraiana	Rw1G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	596
AccB1I	GGYRCC	1 cut(s)	675
AciI	CCGC	3 cut(s)	295, 1016, 1232
AclWI	GGATC	1 cut(s)	1024
AcoI	YGGCCR	2 cut(s)	544, 1017
AcsI	RAATTY	4 cut(s)	194, 740, 1084, 1282
AcuI	CTGAAG	2 cut(s)	381, 919
AfaI	GTAC	2 cut(s)	132, 1252
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	7 cut(s)	277, 595, 692, 729, 1068, 1079, 1264
AjnI	CCWGG	3 cut(s)	473, 600, 951
AluBI	AGCT	4 cut(s)	257, 416, 933, 1178
AluI	AGCT	4 cut(s)	257, 416, 933, 1178
Alw26I	GTCTC	2 cut(s)	83, 222
AlwI	GGATC	1 cut(s)	1024
AoxI	GGCC	4 cut(s)	544, 566, 1017, 1229
ApeKI	GCWGC	3 cut(s)	416, 419, 1163
ApoI	RAATTY	4 cut(s)	194, 740, 1084, 1282
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
Asp700I	GAANNNNTTC	1 cut(s)	525
AspS9I	GGNCC	3 cut(s)	350, 471, 598
AsuC2I	CCSGG	1 cut(s)	533
AsuHPI	GGTGA	5 cut(s)	212, 221, 521, 758, 869
AvaII	GGWCC	3 cut(s)	350, 471, 598
BaeGI	GKGCMC	1 cut(s)	678
BalI	TGGCCA	1 cut(s)	546
BanI	GGYRCC	1 cut(s)	675
BbsI	GAAGAC	3 cut(s)	117, 518, 1146
BbvI	GCAGC	3 cut(s)	403, 431, 1150
BccI	CCATC	6 cut(s)	536, 555, 698, 848, 1127, 1243
BceAI	ACGGC	1 cut(s)	346
BciT130I	CCWGG	3 cut(s)	475, 602, 953
BclI	TGATCA	1 cut(s)	1140
BcnI	CCSGG	1 cut(s)	533
BcoDI	GTCTC	2 cut(s)	83, 222
BfaI	CTAG	2 cut(s)	249, 492
BfmI	CTRYAG	3 cut(s)	226, 417, 1173
BisI	GCNGC	5 cut(s)	417, 420, 1017, 1164, 1232
BlsI	GCNGC	5 cut(s)	418, 421, 1018, 1165, 1233
Bme1390I	CCNGG	4 cut(s)	475, 533, 602, 953
Bme18I	GGWCC	3 cut(s)	350, 471, 598
BmgT120I	GGNCC	3 cut(s)	350, 471, 598
BmiI	GGNNCC	4 cut(s)	186, 621, 677, 965
BmrFI	CCNGG	4 cut(s)	475, 533, 602, 953
BmsI	GCATC	2 cut(s)	310, 416
BpiI	GAAGAC	3 cut(s)	117, 518, 1146
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
BpuEI	CTTGAG	1 cut(s)	1235
BpuMI	CCSGG	1 cut(s)	533
BsaBI	GATNNNNATC	1 cut(s)	546
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	3 cut(s)	402, 474, 952
BsaXI	ACNNNNNCTCC	4 cut(s)	470, 500, 922, 952
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	2 cut(s)	390, 473
Bse8I	GATNNNNATC	1 cut(s)	546
BseBI	CCWGG	3 cut(s)	475, 602, 953
BseDI	CCNNGG	3 cut(s)	402, 474, 952
BseGI	GGATG	6 cut(s)	40, 112, 325, 710, 859, 1138
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	2 cut(s)	78, 363
BseNI	ACTGG	2 cut(s)	390, 473
BseRI	GAGGAG	1 cut(s)	197
BseSI	GKGCMC	1 cut(s)	678
BseXI	GCAGC	3 cut(s)	403, 431, 1150
BshFI	GGCC	4 cut(s)	546, 568, 1019, 1231
BshNI	GGYRCC	1 cut(s)	675
BsiSI	CCGG	2 cut(s)	533, 1148
BslFI	GGGAC	2 cut(s)	521, 809
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	2 cut(s)	83, 222
BsmFI	GGGAC	2 cut(s)	521, 809
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	4 cut(s)	546, 568, 1019, 1231
Bso31I	GGTCTC	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	678
Bsp143I	GATC	3 cut(s)	1029, 1140, 1221
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	3 cut(s)	295, 1016, 1232
BspANI	GGCC	4 cut(s)	546, 568, 1019, 1231
BspCNI	CTCAG	2 cut(s)	79, 364
BspHI	TCATGA	2 cut(s)	232, 1286
BspLI	GGNNCC	4 cut(s)	186, 621, 677, 965
BspMAI	CTGCAG	1 cut(s)	421
BspPI	GGATC	1 cut(s)	1024
BspT107I	GGYRCC	1 cut(s)	675
BspTNI	GGTCTC	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	390, 473
BssECI	CCNNGG	3 cut(s)	402, 474, 952
BssMI	GATC	3 cut(s)	1029, 1140, 1221
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	3 cut(s)	475, 602, 953
Bst4CI	ACNGT	4 cut(s)	437, 733, 1174, 1255
Bst6I	CTCTTC	1 cut(s)	783
BstC8I	GCNNGC	2 cut(s)	949, 1180
BstDEI	CTNAG	4 cut(s)	87, 372, 697, 1167
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	6 cut(s)	40, 112, 325, 710, 859, 1138
BstKTI	GATC	3 cut(s)	1032, 1143, 1224
BstMAI	GTCTC	2 cut(s)	83, 222
BstMBI	GATC	3 cut(s)	1029, 1140, 1221
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 413, 963, 1144
BstNI	CCWGG	3 cut(s)	475, 602, 953
BstNSI	RCATGY	2 cut(s)	118, 788
BstSCI	CCNGG	4 cut(s)	473, 531, 600, 951
BstSFI	CTRYAG	3 cut(s)	226, 417, 1173
BstSLI	GKGCMC	1 cut(s)	678
BstV1I	GCAGC	3 cut(s)	403, 431, 1150
BstV2I	GAAGAC	3 cut(s)	117, 518, 1146
BstXI	CCANNNNNNTGG	1 cut(s)	789
BsuRI	GGCC	4 cut(s)	546, 568, 1019, 1231
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	6 cut(s)	40, 112, 325, 710, 859, 1138
BtsIMutI	CAGTG	3 cut(s)	321, 442, 990
Cac8I	GCNNGC	2 cut(s)	949, 1180
CciI	TCATGA	2 cut(s)	232, 1286
Cfr13I	GGNCC	3 cut(s)	350, 471, 598
Csp6I	GTAC	2 cut(s)	131, 1251
CviAII	CATG	8 cut(s)	115, 172, 233, 403, 785, 789, 1109, 1287
CviQI	GTAC	2 cut(s)	131, 1251
DdeI	CTNAG	4 cut(s)	87, 372, 697, 1167
DpnI	GATC	3 cut(s)	1031, 1142, 1223
DpnII	GATC	3 cut(s)	1029, 1140, 1221
DrdI	GACNNNNNNGTC	1 cut(s)	596
DseDI	GACNNNNNNGTC	1 cut(s)	596
EaeI	YGGCCR	2 cut(s)	544, 1017
Eam1104I	CTCTTC	1 cut(s)	783
EarI	CTCTTC	1 cut(s)	783
Eco130I	CCWWGG	1 cut(s)	402
Eco31I	GGTCTC	1 cut(s)	83
Eco47I	GGWCC	3 cut(s)	350, 471, 598
Eco57I	CTGAAG	2 cut(s)	381, 919
EcoRI	GAATTC	1 cut(s)	194
EcoRII	CCWGG	3 cut(s)	473, 600, 951
EcoT14I	CCWWGG	1 cut(s)	402
EcoT22I	ATGCAT	1 cut(s)	790
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	8 cut(s)	118, 175, 236, 406, 788, 792, 1112, 1290
FaqI	GGGAC	2 cut(s)	521, 809
FatI	CATG	8 cut(s)	114, 171, 232, 402, 784, 788, 1108, 1286
FbaI	TGATCA	1 cut(s)	1140
Fnu4HI	GCNGC	5 cut(s)	417, 420, 1017, 1164, 1232
FokI	GGATG	6 cut(s)	47, 119, 332, 697, 866, 1145
Fsp4HI	GCNGC	5 cut(s)	417, 420, 1017, 1164, 1232
FspBI	CTAG	2 cut(s)	249, 492
GluI	GCNGC	5 cut(s)	417, 420, 1017, 1164, 1232
HaeIII	GGCC	4 cut(s)	546, 568, 1019, 1231
HapII	CCGG	2 cut(s)	533, 1148
Hin1II	CATG	8 cut(s)	118, 175, 236, 406, 788, 792, 1112, 1290
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HinfI	GANTC	7 cut(s)	38, 44, 68, 80, 236, 822, 1151
HpaII	CCGG	2 cut(s)	533, 1148
HphI	GGTGA	5 cut(s)	212, 221, 521, 758, 869
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188III	TCNNGA	3 cut(s)	233, 411, 1287
Hpy8I	GTNNAC	1 cut(s)	589
HpyAV	CCTTC	4 cut(s)	589, 655, 887, 977
HpyCH4III	ACNGT	4 cut(s)	437, 733, 1174, 1255
HpyCH4IV	ACGT	1 cut(s)	523
HpyCH4V	TGCA	5 cut(s)	323, 419, 788, 848, 1182
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 413, 963, 1144
HpyF3I	CTNAG	4 cut(s)	87, 372, 697, 1167
HpySE526I	ACGT	1 cut(s)	523
Hsp92II	CATG	8 cut(s)	118, 175, 236, 406, 788, 792, 1112, 1290
Ksp22I	TGATCA	1 cut(s)	1140
Kzo9I	GATC	3 cut(s)	1029, 1140, 1221
LmnI	GCTCC	4 cut(s)	184, 619, 930, 963
Lsp1109I	GCAGC	3 cut(s)	403, 431, 1150
LweI	GCATC	2 cut(s)	310, 416
MaeI	CTAG	2 cut(s)	249, 492
MaeII	ACGT	1 cut(s)	523
MaeIII	GTNAC	5 cut(s)	608, 772, 938, 1091, 1209
MalI	GATC	3 cut(s)	1031, 1142, 1223
MboI	GATC	3 cut(s)	1029, 1140, 1221
MfeI	CAATTG	2 cut(s)	630, 753
MhlI	GDGCHC	1 cut(s)	678
MlsI	TGGCCA	1 cut(s)	546
MluNI	TGGCCA	1 cut(s)	546
MlyI	GAGTC	5 cut(s)	32, 77, 230, 831, 1160
MmeI	TCCRAC	3 cut(s)	57, 361, 738
MnlI	CCTC	9 cut(s)	25, 175, 233, 457, 472, 558, 786, 843, 1047
Mox20I	TGGCCA	1 cut(s)	546
Mph1103I	ATGCAT	1 cut(s)	790
MroXI	GAANNNNTTC	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	546
MseI	TTAA	3 cut(s)	653, 912, 920
MslI	CAYNNNNRTG	3 cut(s)	207, 787, 1187
Msp20I	TGGCCA	1 cut(s)	546
MspI	CCGG	2 cut(s)	533, 1148
MspR9I	CCNGG	4 cut(s)	475, 533, 602, 953
MunI	CAATTG	2 cut(s)	630, 753
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	3 cut(s)	475, 602, 953
MwoI	GCNNNNNNNGC	4 cut(s)	254, 413, 963, 1144
NciI	CCSGG	1 cut(s)	533
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	3 cut(s)	1029, 1140, 1221
NlaIII	CATG	8 cut(s)	118, 175, 236, 406, 788, 792, 1112, 1290
NlaIV	GGNNCC	4 cut(s)	186, 621, 677, 965
NmeAIII	GCCGAG	1 cut(s)	961
NsiI	ATGCAT	1 cut(s)	790
NspI	RCATGY	2 cut(s)	118, 788
PagI	TCATGA	2 cut(s)	232, 1286
PctI	GAATGC	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	2 cut(s)	44, 80
PkrI	GCNGC	5 cut(s)	418, 421, 1018, 1165, 1233
PleI	GAGTC	5 cut(s)	32, 76, 230, 830, 1159
PpsI	GAGTC	5 cut(s)	32, 76, 230, 830, 1159
Psp6I	CCWGG	3 cut(s)	473, 600, 951
PspGI	CCWGG	3 cut(s)	473, 600, 951
PspN4I	GGNNCC	4 cut(s)	186, 621, 677, 965
PspPI	GGNCC	3 cut(s)	350, 471, 598
PstI	CTGCAG	1 cut(s)	421
RsaI	GTAC	2 cut(s)	132, 1252
RsaNI	GTAC	2 cut(s)	131, 1251
RseI	CAYNNNNRTG	3 cut(s)	207, 787, 1187
SaqAI	TTAA	3 cut(s)	653, 912, 920
SatI	GCNGC	5 cut(s)	417, 420, 1017, 1164, 1232
Sau3AI	GATC	3 cut(s)	1029, 1140, 1221
Sau96I	GGNCC	3 cut(s)	350, 471, 598
SchI	GAGTC	5 cut(s)	32, 77, 230, 831, 1160
ScrFI	CCNGG	4 cut(s)	475, 533, 602, 953
SduI	GDGCHC	1 cut(s)	678
SfaNI	GCATC	2 cut(s)	310, 416
SfcI	CTRYAG	3 cut(s)	226, 417, 1173
SinI	GGWCC	3 cut(s)	350, 471, 598
SmiMI	CAYNNNNRTG	3 cut(s)	207, 787, 1187
SmlI	CTYRAG	1 cut(s)	1214
SmoI	CTYRAG	1 cut(s)	1214
SsiI	CCGC	3 cut(s)	295, 1016, 1232
SspMI	CTAG	2 cut(s)	249, 492
StyD4I	CCNGG	4 cut(s)	473, 531, 600, 951
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	4 cut(s)	437, 733, 1174, 1255
TaiI	ACGT	1 cut(s)	526
TaqI	TCGA	2 cut(s)	430, 820
TaqII	GACCGA	1 cut(s)	107
TauI	GCSGC	2 cut(s)	1019, 1234
TfiI	GAWTC	2 cut(s)	44, 80
Tru1I	TTAA	3 cut(s)	653, 912, 920
Tru9I	TTAA	3 cut(s)	653, 912, 920
TscAI	CASTG	3 cut(s)	321, 442, 997
TseI	GCWGC	3 cut(s)	416, 419, 1163
TspDTI	ATGAA	9 cut(s)	72, 123, 165, 207, 408, 753, 876, 906, 1275
TspRI	CASTG	3 cut(s)	321, 442, 997
VpaK11BI	GGWCC	3 cut(s)	350, 471, 598
XapI	RAATTY	4 cut(s)	194, 740, 1084, 1282
XceI	RCATGY	2 cut(s)	118, 788
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	2 cut(s)	249, 492
Zsp2I	ATGCAT	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.