Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8472165.1

Orthogroup ID

OG0006536

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2038

Gene Structure 2037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8472165.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 977 bp

cggaagagctctccacttcgcatctaacctcgcctcgctctggtacccccgtcaagcttctcggtagagaagacgccagtgttgattggtacaatctggaaaagtccaagcgtgttaaaccatttcgatgcggtgattttgatgattgcattcacaaggctgaatcggcacaaggtatgccgccaaagaaaagagaaaaatatgcacgtcgagaagatgctattcttcatgcgcttgaacttgagaggcaactgttgaggaaacaaggaaagtcaacttctgaatacgtgaacagtaaatatggtgctgtgaaggaggctgttataccctcagaaagtttgggaaaagaccattcaaaacttgggaattccaaatcgcatcagttatacaagcgaaaagattcgtttcataagaaggatattataggtagtcccctgccttctcaaagactcaaagagggaacccaattgagtggtgaagatgatcgttttgaagtgacacctcgaatgagaggcttgcaggactttggtctcaaaattgcctcttcaaagcgaaaactttcatcttcctctacttcaaatggtttttggaaacccacaattgatggtacgtatcaagcatttgctcatggtggcctcagcctgggaggaacaagtcacgtgaacggagtggagcagacgggagctatttgcagagcaaagaggagtaaatgtgtatacttgccagctgactctggtgattctttggagtatgaagcagcaccttcaggccatattgagatatcagcttcccctgttggcactcgtctacatgctgagagtttgattgaggacaacacttctgggtttacagaagatctagaggagtccaatttttctgaaactgattcctctgaccatggatctgattcctcagagactgagccggatatggatgaagagatgccttcattttcaggttccgctttagcgtttcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWWP

Protein Analysis

325

Amino Acids

35.7

Weight (kDa)

5.99

Isoelectric Point (pI)

53.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03140
fragaria_vesca	FvH4_7g33590 FvH4_7g33593 FvH4_7g33620
malus_domestica	MD01G1233800.v1.1 MD07G1305900.v1.1
prunus_persica	Prupe.2G324000_v2.0.a1 Prupe.2G324000_v2.0.a1 Prupe.2G324000_v2.0.a1 Prupe.2G324000_v2.0.a1 Prupe.2G324000_v2.0.a1 Prupe.2G324000_v2.0.a1
pyrus_communis	pycom01g24210 pycom07g27910
rosa_chinensis	RchiOBHm_Chr1g0383861
rosa_laevigata	RLG00000026090
rosa_multiflora	Rmu_co8472165.1_g000001 Rmu_sc0005139.1_g000032 Rmu_sc0012471.1_g000004
rosa_roxburghii	Rroxscaffold_4G00277190
rosa_rugosa	Rorug01G0442600
rosa_samantha	Rh1AG468600 Rh1BG426300 Rh1CG439000 Rh1DG459100
rosa_wichuraiana	Rw1G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	43
AccI	GTMKAC	2 cut(s)	716, 807
AciI	CCGC	3 cut(s)	131, 181, 962
AclWI	GGATC	1 cut(s)	909
AcsI	RAATTY	1 cut(s)	366
AcuI	CTGAAG	1 cut(s)	749
AcvI	CACGTG	1 cut(s)	660
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	3 cut(s)	45, 91, 609
AfiI	CCNNNNNNNGG	2 cut(s)	40, 642
AgsI	TTSAA	5 cut(s)	238, 356, 493, 548, 578
AjiI	CACGTC	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	641
AluBI	AGCT	5 cut(s)	9, 57, 685, 727, 787
AluI	AGCT	5 cut(s)	9, 57, 685, 727, 787
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	2 cut(s)	535, 910
AlwI	GGATC	1 cut(s)	909
AlwNI	CAGNNNCTG	1 cut(s)	919
AoxI	GGCC	2 cut(s)	633, 768
ApeKI	GCWGC	1 cut(s)	757
ApoI	RAATTY	1 cut(s)	366
Asp700I	GAANNNNTTC	2 cut(s)	399, 558
Asp718I	GGTACC	1 cut(s)	43
AspLEI	GCGC	1 cut(s)	234
AsuHPI	GGTGA	3 cut(s)	145, 487, 748
BaeI	ACNNNNGTAYC	2 cut(s)	35, 68
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	11
BbrPI	CACGTG	1 cut(s)	660
BbsI	GAAGAC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	11
BbvCI	CCTCAGC	1 cut(s)	637
BbvI	GCAGC	1 cut(s)	769
BccI	CCATC	1 cut(s)	598
BciT130I	CCWGG	1 cut(s)	643
BcoDI	GTCTC	2 cut(s)	535, 910
BfaI	CTAG	1 cut(s)	859
BglII	AGATCT	1 cut(s)	855
BisI	GCNGC	2 cut(s)	181, 758
BlsI	GCNGC	2 cut(s)	182, 759
Bme1390I	CCNGG	1 cut(s)	643
BmgBI	CACGTC	1 cut(s)	208
BmiI	GGNNCC	3 cut(s)	45, 462, 960
BmrFI	CCNGG	1 cut(s)	643
BmsI	GCATC	5 cut(s)	30, 118, 207, 387, 932
BoxI	GACNNNNGTC	1 cut(s)	527
BpiI	GAAGAC	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	637
BpuEI	CTTGAG	1 cut(s)	262
BsaAI	YACGTR	3 cut(s)	288, 611, 660
BsaHI	GRCGYC	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	535
BsaJI	CCNNGG	2 cut(s)	642, 897
BsaXI	ACNNNNNCTCC	2 cut(s)	696, 726
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 642
Bse1I	ACTGG	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	643
BseDI	CCNNGG	2 cut(s)	642, 897
BseGI	GGATG	1 cut(s)	939
BseLI	CCNNNNNNNGG	2 cut(s)	40, 642
BseMII	CTCAG	5 cut(s)	344, 651, 806, 911, 926
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	2 cut(s)	717, 877
BseXI	GCAGC	1 cut(s)	769
BshFI	GGCC	2 cut(s)	635, 770
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	925
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	2 cut(s)	40, 642
BsmAI	GTCTC	2 cut(s)	535, 910
BsmFI	GGGAC	1 cut(s)	416
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	635, 770
Bso31I	GGTCTC	1 cut(s)	535
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	3 cut(s)	483, 855, 901
Bsp19I	CCATGG	1 cut(s)	897
BspACI	CCGC	3 cut(s)	131, 181, 962
BspANI	GGCC	2 cut(s)	635, 770
BspCNI	CTCAG	5 cut(s)	343, 650, 807, 912, 925
BspLI	GGNNCC	3 cut(s)	45, 462, 960
BspPI	GGATC	1 cut(s)	909
BspT107I	GGYRCC	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	535
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	642, 897
BssMI	GATC	3 cut(s)	483, 855, 901
BssNAI	GTATAC	1 cut(s)	717
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	897
Bst1107I	GTATAC	1 cut(s)	717
Bst2UI	CCWGG	1 cut(s)	643
Bst4CI	ACNGT	2 cut(s)	254, 295
Bst6I	CTCTTC	2 cut(s)	549, 932
BstACI	GRCGYC	1 cut(s)	74
BstBAI	YACGTR	3 cut(s)	288, 611, 660
BstC8I	GCNNGC	2 cut(s)	517, 725
BstDEI	CTNAG	5 cut(s)	330, 637, 815, 912, 920
BstDSI	CCRYGG	1 cut(s)	897
BstF5I	GGATG	1 cut(s)	939
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	3 cut(s)	486, 858, 904
BstMAI	GTCTC	2 cut(s)	535, 910
BstMBI	GATC	3 cut(s)	483, 855, 901
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstNI	CCWGG	1 cut(s)	643
BstNSI	RCATGY	1 cut(s)	814
BstPAI	GACNNNNGTC	1 cut(s)	527
BstSCI	CCNGG	1 cut(s)	641
BstSNI	TACGTA	1 cut(s)	611
BstV1I	GCAGC	1 cut(s)	769
BstV2I	GAAGAC	1 cut(s)	77
BstX2I	RGATCY	2 cut(s)	855, 901
BstXI	CCANNNNNNTGG	1 cut(s)	472
BstYI	RGATCY	2 cut(s)	855, 901
BstZ17I	GTATAC	1 cut(s)	717
BsuRI	GGCC	2 cut(s)	635, 770
BtgI	CCRYGG	1 cut(s)	897
BtrI	CACGTC	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	939
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	517, 725
CaiI	CAGNNNCTG	1 cut(s)	919
CfoI	GCGC	1 cut(s)	234
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	3 cut(s)	44, 90, 608
CviAII	CATG	4 cut(s)	229, 628, 811, 898
CviQI	GTAC	3 cut(s)	44, 90, 608
DdeI	CTNAG	5 cut(s)	330, 637, 815, 912, 920
DpnI	GATC	3 cut(s)	485, 857, 903
DpnII	GATC	3 cut(s)	483, 855, 901
Eam1104I	CTCTTC	2 cut(s)	549, 932
EarI	CTCTTC	2 cut(s)	549, 932
Ecl136II	GAGCTC	1 cut(s)	9
Eco105I	TACGTA	1 cut(s)	611
Eco130I	CCWWGG	1 cut(s)	897
Eco24I	GRGCYC	1 cut(s)	11
Eco31I	GGTCTC	1 cut(s)	535
Eco32I	GATATC	1 cut(s)	782
Eco53kI	GAGCTC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	749
Eco72I	CACGTG	1 cut(s)	660
EcoICRI	GAGCTC	1 cut(s)	9
EcoRI	GAATTC	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	641
EcoRV	GATATC	1 cut(s)	782
EcoT14I	CCWWGG	1 cut(s)	897
EcoT38I	GRGCYC	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	897
FaeI	CATG	4 cut(s)	232, 631, 814, 901
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	4 cut(s)	228, 627, 810, 897
FblI	GTMKAC	2 cut(s)	716, 807
Fnu4HI	GCNGC	2 cut(s)	181, 758
FokI	GGATG	1 cut(s)	946
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	2 cut(s)	181, 758
FspBI	CTAG	1 cut(s)	859
GlaI	GCGC	1 cut(s)	233
GluI	GCNGC	2 cut(s)	181, 758
HaeIII	GGCC	2 cut(s)	635, 770
HapII	CCGG	1 cut(s)	925
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	234
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	4 cut(s)	232, 631, 814, 901
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HincII	GTYRAC	1 cut(s)	275
HindII	GTYRAC	1 cut(s)	275
HindIII	AAGCTT	1 cut(s)	55
HinfI	GANTC	8 cut(s)	163, 400, 449, 730, 739, 865, 886, 907
HpaII	CCGG	1 cut(s)	925
HphI	GGTGA	3 cut(s)	145, 487, 748
Hpy166II	GTNNAC	6 cut(s)	275, 291, 663, 717, 808, 848
Hpy188I	TCNGA	6 cut(s)	282, 333, 879, 894, 906, 915
Hpy188III	TCNNGA	3 cut(s)	97, 211, 859
Hpy8I	GTNNAC	6 cut(s)	275, 291, 663, 717, 808, 848
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	5 cut(s)	306, 408, 449, 773, 956
HpyCH4III	ACNGT	2 cut(s)	254, 295
HpyCH4IV	ACGT	4 cut(s)	207, 287, 610, 659
HpyCH4V	TGCA	4 cut(s)	149, 205, 519, 692
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpyF3I	CTNAG	5 cut(s)	330, 637, 815, 912, 920
HpySE526I	ACGT	4 cut(s)	207, 287, 610, 659
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	4 cut(s)	232, 631, 814, 901
HspAI	GCGC	1 cut(s)	232
KpnI	GGTACC	1 cut(s)	47
Kzo9I	GATC	3 cut(s)	483, 855, 901
LmnI	GCTCC	2 cut(s)	672, 682
Lsp1109I	GCAGC	1 cut(s)	769
LweI	GCATC	5 cut(s)	30, 118, 207, 387, 932
MaeI	CTAG	1 cut(s)	859
MaeII	ACGT	4 cut(s)	207, 287, 610, 659
MaeIII	GTNAC	2 cut(s)	495, 655
MalI	GATC	3 cut(s)	485, 857, 903
MboI	GATC	3 cut(s)	483, 855, 901
MboII	GAAGA	9 cut(s)	16, 82, 217, 226, 490, 536, 557, 865, 949
MfeI	CAATTG	2 cut(s)	466, 599
MflI	RGATCY	2 cut(s)	855, 901
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	5 cut(s)	366, 466, 536, 599, 870
MlyI	GAGTC	3 cut(s)	443, 724, 874
MroXI	GAANNNNTTC	2 cut(s)	399, 558
MseI	TTAA	1 cut(s)	116
MslI	CAYNNNNRTG	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	727
MspI	CCGG	1 cut(s)	925
MspR9I	CCNGG	1 cut(s)	643
MunI	CAATTG	2 cut(s)	466, 599
Mva1269I	GAATGC	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	643
MwoI	GCNNNNNNNGC	1 cut(s)	166
NcoI	CCATGG	1 cut(s)	897
NdeII	GATC	3 cut(s)	483, 855, 901
NlaIII	CATG	4 cut(s)	232, 631, 814, 901
NlaIV	GGNNCC	3 cut(s)	45, 462, 960
NmuCI	GTSAC	2 cut(s)	495, 655
NspI	RCATGY	1 cut(s)	814
PctI	GAATGC	1 cut(s)	149
PdmI	GAANNNNTTC	2 cut(s)	399, 558
PfeI	GAWTC	5 cut(s)	163, 400, 739, 886, 907
PkrI	GCNGC	2 cut(s)	182, 759
PleI	GAGTC	3 cut(s)	443, 724, 873
PmaCI	CACGTG	1 cut(s)	660
PmlI	CACGTG	1 cut(s)	660
PpsI	GAGTC	3 cut(s)	443, 724, 873
Ppu21I	YACGTR	3 cut(s)	288, 611, 660
PshAI	GACNNNNGTC	1 cut(s)	527
Psp124BI	GAGCTC	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	641
PspCI	CACGTG	1 cut(s)	660
PspGI	CCWGG	1 cut(s)	641
PspN4I	GGNNCC	3 cut(s)	45, 462, 960
PstNI	CAGNNNCTG	1 cut(s)	919
PsuI	RGATCY	2 cut(s)	855, 901
PvuII	CAGCTG	1 cut(s)	727
RsaI	GTAC	3 cut(s)	45, 91, 609
RsaNI	GTAC	3 cut(s)	44, 90, 608
RseI	CAYNNNNRTG	1 cut(s)	126
SacI	GAGCTC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	2 cut(s)	181, 758
Sau3AI	GATC	3 cut(s)	483, 855, 901
SchI	GAGTC	3 cut(s)	443, 724, 874
ScrFI	CCNGG	1 cut(s)	643
SduI	GDGCHC	1 cut(s)	11
SfaNI	GCATC	5 cut(s)	30, 118, 207, 387, 932
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
SnaBI	TACGTA	1 cut(s)	611
Sse9I	AATT	5 cut(s)	366, 466, 536, 599, 870
SsiI	CCGC	3 cut(s)	131, 181, 962
SspMI	CTAG	1 cut(s)	859
SstI	GAGCTC	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	641
StyI	CCWWGG	1 cut(s)	897
TaaI	ACNGT	2 cut(s)	254, 295
TaiI	ACGT	4 cut(s)	210, 290, 613, 662
TaqI	TCGA	3 cut(s)	126, 210, 504
TasI	AATT	5 cut(s)	366, 466, 536, 599, 870
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	5 cut(s)	163, 400, 739, 886, 907
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	2 cut(s)	495, 655
TseI	GCWGC	1 cut(s)	757
Tsp45I	GTSAC	2 cut(s)	495, 655
TspDTI	ATGAA	7 cut(s)	217, 397, 551, 767, 938, 950, 964
TspGWI	ACGGA	1 cut(s)	680
TspRI	CASTG	1 cut(s)	84
XapI	RAATTY	1 cut(s)	366
XbaI	TCTAGA	1 cut(s)	858
XceI	RCATGY	1 cut(s)	814
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XmiI	GTMKAC	2 cut(s)	716, 807
XmnI	GAANNNNTTC	2 cut(s)	399, 558
XspI	CTAG	1 cut(s)	859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.