Rmu_sc0012471.1_g000004

PWWP domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012471.1
Physical Location & Seq
Forward (+)
19698 .. 23411
3714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012471.1_g000004.1.cds

Sequence Viewer

Length: 1404 bp
atgaatcgagaggatgatggaatgagtcgatggattgattggattgaatcgatggatggattggattctagtgttctaccttctacggttcgattccggcgatttcagcgtcggatcgatcgtgtgggtacggcgaaggaacggttcgtggtggccggggaagatagtcggaccggaagagctctccacttcgcatcggatatggatgaagagatgccttcattttcagatccagaagtaggaagatatgaagcacaagaacgtagaagcttgattgatgaggaaccagatgaatcaacacattctggcgacatgcctcacctctataatcaggacccttattttgcaagtgaagctgtgtccaaatggcagttgaaagggaaaaggaatacccgcaatcttagtaaaagatcaattgatacaactgaaggaagaggttatttttatggaccatattctgaagaaaaggctgagatgagtggaatggacgatgggtacccgctatcaagagctgcatcaagaagtcgaaacagggttggtctgaatatgattgattgggaggatgggacctgggaagacaggtctgcctgggatgaatgctgggacatcaaaagagagcgatttgacccggtatatgatgatcgctataatcatcgcaggaggccaaaatacttgatagatgtggacttgaaagtccaggcaagttaccagaaagagcctgtccctattgtttctctgatgagcaagttaaacgggaaggcaataatagggcaccccatccaagttgaagccttagaagatggtttatctaacacgcttctttcaacatttgatgattctggtgaggaagcaattgacaatgatgggggtacaactcttccccacgcatggaggactgcaaggaggacagcaaatgttagagtcccacgtcctcatttattttctacattggatggtgatgaggctgccgatgaccttccctttttcgatgaaggtagaccaccattcaagaaattaaatttggggagttccagtcacaaggcaagccaggtcaggaggaaccctcctcacaactcccggcttctcactgatagaaagttctcgaagaaggtgtctaagaaagtaagcttatcatctagcctgaaaacgaaaacgaggaccttatcttctttaaccattcaacagaactatggtaacaagggaatgatacaatatgatagtggccaaagggataggttggtgaaaccagagtcttctgtatctgtgcccacaactgtagcttgcattcctgtgaaattagttttcagtaggttactcgagaagatcaataggccgccatcaaaagcaacagcagcagcagccagtaatgcggtcttattgaacggggatgtggagagaagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

467

Amino Acids

52.99

Weight (kDa)

7.15

Isoelectric Point (pI)

55.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 692
Acc65I GGTACC 1 cut(s) 495
AccB1I GGYRCC 2 cut(s) 495, 771
AccI GTMKAC 1 cut(s) 997
AciI CCGC 4 cut(s) 394, 500, 1334, 1370
AclWI GGATC 2 cut(s) 122, 224
AcoI YGGCCR 2 cut(s) 153, 1222
AcsI RAATTY 1 cut(s) 1018
AcuI CTGAAG 2 cut(s) 447, 480
AfaI GTAC 3 cut(s) 130, 497, 871
AfiI CCNNNNNNNGG 2 cut(s) 239, 888
AgsI TTSAA 8 cut(s) 47, 376, 691, 788, 825, 1009, 1181, 1381
AjiI CACGTC 1 cut(s) 929
AjnI CCWGG 4 cut(s) 569, 587, 696, 1047
AjuI GAANNNNNNNTTGG 2 cut(s) 1004, 1036
AluBI AGCT 6 cut(s) 182, 270, 356, 512, 1128, 1280
AluI AGCT 6 cut(s) 182, 270, 356, 512, 1128, 1280
Alw21I GWGCWC 1 cut(s) 184
AlwI GGATC 2 cut(s) 122, 224
Ama87I CYCGRG 1 cut(s) 1316
AoxI GGCC 4 cut(s) 153, 662, 1222, 1331
ApeKI GCWGC 5 cut(s) 512, 965, 1352, 1355, 1358
ApoI RAATTY 1 cut(s) 1018
ArsI GACNNNNNNTTYG 4 cut(s) 326, 358, 1097, 1129
Asp718I GGTACC 1 cut(s) 495
AspS9I GGNCC 5 cut(s) 171, 334, 449, 567, 1158
AsuC2I CCSGG 3 cut(s) 157, 629, 1078
AsuHPI GGTGA 4 cut(s) 311, 854, 968, 1252
AvaI CYCGRG 1 cut(s) 1316
AvaII GGWCC 5 cut(s) 171, 334, 449, 567, 1158
BaeGI GKGCMC 2 cut(s) 774, 1269
BalI TGGCCA 1 cut(s) 1224
BanI GGYRCC 2 cut(s) 495, 771
BanII GRGCYC 1 cut(s) 184
BbsI GAAGAC 2 cut(s) 582, 1245
Bbv12I GWGCWC 1 cut(s) 184
BbvI GCAGC 5 cut(s) 499, 952, 1364, 1367, 1370
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 4 cut(s) 571, 589, 698, 1049
BcnI CCSGG 3 cut(s) 157, 629, 1078
BfaI CTAG 2 cut(s) 69, 1137
BfmI CTRYAG 1 cut(s) 1275
BisI GCNGC 6 cut(s) 513, 966, 1334, 1353, 1356, 1359
BlsI GCNGC 6 cut(s) 514, 967, 1335, 1354, 1357, 1360
Bme1390I CCNGG 7 cut(s) 157, 571, 589, 629, 698, 1049, 1078
Bme18I GGWCC 5 cut(s) 171, 334, 449, 567, 1158
BmeT110I CYCGRG 1 cut(s) 1316
BmgBI CACGTC 1 cut(s) 929
BmgT120I GGNCC 5 cut(s) 171, 334, 449, 567, 1158
BmiI GGNNCC 6 cut(s) 285, 336, 497, 568, 773, 1061
BmrFI CCNGG 7 cut(s) 157, 571, 589, 629, 698, 1049, 1078
BmsI GCATC 3 cut(s) 203, 204, 524
BpiI GAAGAC 2 cut(s) 582, 1245
BplI GAGNNNNNCTC 2 cut(s) 1048, 1080
BpuMI CCSGG 3 cut(s) 157, 629, 1078
Bsa29I ATCGAT 2 cut(s) 50, 117
BsaJI CCNNGG 3 cut(s) 156, 570, 588
BsaWI WCCGGW 1 cut(s) 173
BsaXI ACNNNNNCTCC 2 cut(s) 1018, 1048
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 888
Bse1I ACTGG 2 cut(s) 1032, 1362
BseBI CCWGG 4 cut(s) 571, 589, 698, 1049
BseCI ATCGAT 2 cut(s) 50, 117
BseDI CCNNGG 3 cut(s) 156, 570, 588
BseGI GGATG 8 cut(s) 19, 61, 211, 568, 598, 777, 958, 1393
BseLI CCNNNNNNNGG 2 cut(s) 239, 888
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 2 cut(s) 1032, 1362
BseRI GAGGAG 1 cut(s) 1056
BseSI GKGCMC 2 cut(s) 774, 1269
BseXI GCAGC 5 cut(s) 499, 952, 1364, 1367, 1370
BseYI CCCAGC 1 cut(s) 600
Bsh1285I CGRYCG 1 cut(s) 121
BshFI GGCC 4 cut(s) 155, 664, 1224, 1333
BshNI GGYRCC 2 cut(s) 495, 771
BshVI ATCGAT 2 cut(s) 50, 117
BsiEI CGRYCG 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 184
BsiHKCI CYCGRG 1 cut(s) 1316
BsiSI CCGG 5 cut(s) 97, 156, 174, 629, 1078
BslFI GGGAC 4 cut(s) 580, 617, 707, 908
BslI CCNNNNNNNGG 2 cut(s) 239, 888
BsmFI GGGAC 4 cut(s) 580, 617, 707, 908
BsmI GAATGC 2 cut(s) 602, 1284
BsnI GGCC 4 cut(s) 155, 664, 1224, 1333
BsoBI CYCGRG 1 cut(s) 1316
Bsp1286I GDGCHC 3 cut(s) 184, 774, 1269
Bsp143I GATC 6 cut(s) 114, 118, 229, 410, 640, 1323
BspACI CCGC 4 cut(s) 394, 500, 1334, 1370
BspANI GGCC 4 cut(s) 155, 664, 1224, 1333
BspCNI CTCAG 1 cut(s) 463
BspDI ATCGAT 2 cut(s) 50, 117
BspLI GGNNCC 6 cut(s) 285, 336, 497, 568, 773, 1061
BspPI GGATC 2 cut(s) 122, 224
BspQI GCTCTTC 1 cut(s) 172
BspT107I GGYRCC 2 cut(s) 495, 771
BsrI ACTGG 2 cut(s) 1032, 1362
BssECI CCNNGG 3 cut(s) 156, 570, 588
BssMI GATC 6 cut(s) 114, 118, 229, 410, 640, 1323
Bst2UI CCWGG 4 cut(s) 571, 589, 698, 1049
Bst4CI ACNGT 3 cut(s) 88, 144, 1276
Bst6I CTCTTC 4 cut(s) 172, 204, 427, 882
BstC8I GCNNGC 2 cut(s) 1045, 1282
BstDEI CTNAG 4 cut(s) 401, 471, 793, 1116
BstF5I GGATG 8 cut(s) 19, 61, 211, 568, 598, 777, 958, 1393
BstKTI GATC 6 cut(s) 117, 121, 232, 413, 643, 1326
BstMBI GATC 6 cut(s) 114, 118, 229, 410, 640, 1323
BstMCI CGRYCG 1 cut(s) 121
BstMWI GCNNNNNNNGC 5 cut(s) 106, 353, 1352, 1358, 1367
BstNI CCWGG 4 cut(s) 571, 589, 698, 1049
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 7 cut(s) 155, 569, 587, 627, 696, 1047, 1076
BstSFI CTRYAG 1 cut(s) 1275
BstSLI GKGCMC 2 cut(s) 774, 1269
BstV1I GCAGC 5 cut(s) 499, 952, 1364, 1367, 1370
BstV2I GAAGAC 2 cut(s) 582, 1245
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
Bsu15I ATCGAT 2 cut(s) 50, 117
BsuRI GGCC 4 cut(s) 155, 664, 1224, 1333
BsuTUI ATCGAT 2 cut(s) 50, 117
BtgZI GCGATG 1 cut(s) 638
BtrI CACGTC 1 cut(s) 929
BtsCI GGATG 8 cut(s) 19, 61, 211, 568, 598, 777, 958, 1393
BtsIMutI CAGTG 1 cut(s) 1086
Cac8I GCNNGC 2 cut(s) 1045, 1282
Cfr13I GGNCC 5 cut(s) 171, 334, 449, 567, 1158
ClaI ATCGAT 2 cut(s) 50, 117
CpoI CGGWCCG 1 cut(s) 171
CseI GACGC 1 cut(s) 98
Csp6I GTAC 3 cut(s) 129, 496, 870
CspI CGGWCCG 1 cut(s) 171
CviAII CATG 2 cut(s) 313, 888
CviQI GTAC 3 cut(s) 129, 496, 870
DdeI CTNAG 4 cut(s) 401, 471, 793, 1116
DpnI GATC 6 cut(s) 116, 120, 231, 412, 642, 1325
DpnII GATC 6 cut(s) 114, 118, 229, 410, 640, 1323
DrdI GACNNNNNNGTC 1 cut(s) 692
DseDI GACNNNNNNGTC 1 cut(s) 692
EaeI YGGCCR 2 cut(s) 153, 1222
Eam1104I CTCTTC 4 cut(s) 172, 204, 427, 882
EarI CTCTTC 4 cut(s) 172, 204, 427, 882
Ecl136II GAGCTC 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 184
Eco47I GGWCC 5 cut(s) 171, 334, 449, 567, 1158
Eco53kI GAGCTC 1 cut(s) 182
Eco57I CTGAAG 2 cut(s) 447, 480
Eco88I CYCGRG 1 cut(s) 1316
EcoICRI GAGCTC 1 cut(s) 182
EcoO109I RGGNCCY 3 cut(s) 334, 567, 1158
EcoRII CCWGG 4 cut(s) 569, 587, 696, 1047
EcoT38I GRGCYC 1 cut(s) 184
FaeI CATG 2 cut(s) 316, 891
FaqI GGGAC 4 cut(s) 580, 617, 707, 908
FatI CATG 2 cut(s) 312, 887
FauI CCCGC 2 cut(s) 401, 507
FblI GTMKAC 1 cut(s) 997
Fnu4HI GCNGC 6 cut(s) 513, 966, 1334, 1353, 1356, 1359
FokI GGATG 8 cut(s) 26, 68, 218, 575, 605, 764, 965, 1400
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 6 cut(s) 513, 966, 1334, 1353, 1356, 1359
FspBI CTAG 2 cut(s) 69, 1137
GluI GCNGC 6 cut(s) 513, 966, 1334, 1353, 1356, 1359
GsaI CCCAGC 1 cut(s) 604
HaeIII GGCC 4 cut(s) 155, 664, 1224, 1333
HapII CCGG 5 cut(s) 97, 156, 174, 629, 1078
HgaI GACGC 1 cut(s) 98
Hin1II CATG 2 cut(s) 316, 891
HindIII AAGCTT 2 cut(s) 268, 1126
HinfI GANTC 9 cut(s) 4, 25, 47, 65, 93, 293, 836, 921, 1250
HpaII CCGG 5 cut(s) 97, 156, 174, 629, 1078
HphI GGTGA 4 cut(s) 311, 854, 968, 1252
Hpy166II GTNNAC 2 cut(s) 685, 998
Hpy188I TCNGA 7 cut(s) 114, 171, 199, 229, 460, 543, 738
Hpy188III TCNNGA 9 cut(s) 8, 233, 332, 507, 519, 1009, 1054, 1102, 1318
Hpy8I GTNNAC 2 cut(s) 685, 998
Hpy99I CGWCG 1 cut(s) 114
HpyAV CCTTC 8 cut(s) 90, 130, 228, 422, 751, 986, 986, 1102
HpyCH4III ACNGT 3 cut(s) 88, 144, 1276
HpyCH4IV ACGT 2 cut(s) 262, 928
HpyCH4V TGCA 4 cut(s) 347, 515, 899, 1284
HpyF10VI GCNNNNNNNGC 5 cut(s) 106, 353, 1352, 1358, 1367
HpyF3I CTNAG 4 cut(s) 401, 471, 793, 1116
HpySE526I ACGT 2 cut(s) 262, 928
Hsp92II CATG 2 cut(s) 316, 891
KpnI GGTACC 1 cut(s) 499
Kzo9I GATC 6 cut(s) 114, 118, 229, 410, 640, 1323
LguI GCTCTTC 1 cut(s) 172
Lsp1109I GCAGC 5 cut(s) 499, 952, 1364, 1367, 1370
LweI GCATC 3 cut(s) 203, 204, 524
MaeI CTAG 2 cut(s) 69, 1137
MaeII ACGT 2 cut(s) 262, 928
MaeIII GTNAC 4 cut(s) 704, 1034, 1193, 1311
MalI GATC 6 cut(s) 116, 120, 231, 412, 642, 1325
MboI GATC 6 cut(s) 114, 118, 229, 410, 640, 1323
MfeI CAATTG 2 cut(s) 414, 852
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 3 cut(s) 184, 774, 1269
MlsI TGGCCA 1 cut(s) 1224
MluCI AATT 5 cut(s) 414, 852, 1013, 1018, 1295
MluNI TGGCCA 1 cut(s) 1224
MlyI GAGTC 3 cut(s) 34, 930, 1259
MmeI TCCRAC 2 cut(s) 92, 149
Mox20I TGGCCA 1 cut(s) 1224
MscI TGGCCA 1 cut(s) 1224
MseI TTAA 3 cut(s) 749, 1016, 1172
MslI CAYNNNNRTG 1 cut(s) 1289
Msp20I TGGCCA 1 cut(s) 1224
MspI CCGG 5 cut(s) 97, 156, 174, 629, 1078
MspR9I CCNGG 7 cut(s) 157, 571, 589, 629, 698, 1049, 1078
MunI CAATTG 2 cut(s) 414, 852
Mva1269I GAATGC 2 cut(s) 602, 1284
MvaI CCWGG 4 cut(s) 571, 589, 698, 1049
MwoI GCNNNNNNNGC 5 cut(s) 106, 353, 1352, 1358, 1367
NciI CCSGG 3 cut(s) 157, 629, 1078
NdeII GATC 6 cut(s) 114, 118, 229, 410, 640, 1323
NlaIII CATG 2 cut(s) 316, 891
NlaIV GGNNCC 6 cut(s) 285, 336, 497, 568, 773, 1061
NmuCI GTSAC 1 cut(s) 1034
NspI RCATGY 1 cut(s) 316
PaeR7I CTCGAG 1 cut(s) 1316
PciSI GCTCTTC 1 cut(s) 172
PcsI WCGNNNNNNNCGW 2 cut(s) 97, 118
PctI GAATGC 2 cut(s) 602, 1284
PfeI GAWTC 6 cut(s) 4, 47, 65, 93, 293, 836
PkrI GCNGC 6 cut(s) 514, 967, 1335, 1354, 1357, 1360
Ple19I CGATCG 1 cut(s) 121
PleI GAGTC 3 cut(s) 33, 929, 1258
PpsI GAGTC 3 cut(s) 33, 929, 1258
PpuMI RGGWCCY 3 cut(s) 334, 567, 1158
Psp124BI GAGCTC 1 cut(s) 184
Psp5II RGGWCCY 3 cut(s) 334, 567, 1158
Psp6I CCWGG 4 cut(s) 569, 587, 696, 1047
PspFI CCCAGC 1 cut(s) 600
PspGI CCWGG 4 cut(s) 569, 587, 696, 1047
PspN4I GGNNCC 6 cut(s) 285, 336, 497, 568, 773, 1061
PspPI GGNCC 5 cut(s) 171, 334, 449, 567, 1158
PspPPI RGGWCCY 3 cut(s) 334, 567, 1158
PsuI RGATCY 1 cut(s) 229
PvuI CGATCG 1 cut(s) 121
RsaI GTAC 3 cut(s) 130, 497, 871
RsaNI GTAC 3 cut(s) 129, 496, 870
RseI CAYNNNNRTG 1 cut(s) 1289
Rsr2I CGGWCCG 1 cut(s) 171
RsrII CGGWCCG 1 cut(s) 171
SacI GAGCTC 1 cut(s) 184
SapI GCTCTTC 1 cut(s) 172
SaqAI TTAA 3 cut(s) 749, 1016, 1172
SatI GCNGC 6 cut(s) 513, 966, 1334, 1353, 1356, 1359
Sau3AI GATC 6 cut(s) 114, 118, 229, 410, 640, 1323
Sau96I GGNCC 5 cut(s) 171, 334, 449, 567, 1158
SchI GAGTC 3 cut(s) 34, 930, 1259
ScrFI CCNGG 7 cut(s) 157, 571, 589, 629, 698, 1049, 1078
SduI GDGCHC 3 cut(s) 184, 774, 1269
SfaNI GCATC 3 cut(s) 203, 204, 524
SfcI CTRYAG 1 cut(s) 1275
Sfr274I CTCGAG 1 cut(s) 1316
SinI GGWCC 5 cut(s) 171, 334, 449, 567, 1158
SlaI CTCGAG 1 cut(s) 1316
SmiMI CAYNNNNRTG 1 cut(s) 1289
SmlI CTYRAG 1 cut(s) 1316
SmoI CTYRAG 1 cut(s) 1316
Sse9I AATT 5 cut(s) 414, 852, 1013, 1018, 1295
SsiI CCGC 4 cut(s) 394, 500, 1334, 1370
SspMI CTAG 2 cut(s) 69, 1137
SstI GAGCTC 1 cut(s) 184
StyD4I CCNGG 7 cut(s) 155, 569, 587, 627, 696, 1047, 1076
TaaI ACNGT 3 cut(s) 88, 144, 1276
TaiI ACGT 2 cut(s) 265, 931
TaqI TCGA 9 cut(s) 7, 28, 50, 91, 117, 526, 987, 1103, 1317
TasI AATT 5 cut(s) 414, 852, 1013, 1018, 1295
TauI GCSGC 1 cut(s) 1336
TfiI GAWTC 6 cut(s) 4, 47, 65, 93, 293, 836
Tru1I TTAA 3 cut(s) 749, 1016, 1172
Tru9I TTAA 3 cut(s) 749, 1016, 1172
TscAI CASTG 1 cut(s) 1093
TseFI GTSAC 1 cut(s) 1034
TseI GCWGC 5 cut(s) 512, 965, 1352, 1355, 1358
Tsp45I GTSAC 1 cut(s) 1034
TspDTI ATGAA 7 cut(s) 17, 210, 222, 264, 306, 609, 1005
TspRI CASTG 1 cut(s) 1093
VpaK11BI GGWCC 5 cut(s) 171, 334, 449, 567, 1158
XapI RAATTY 1 cut(s) 1018
XceI RCATGY 1 cut(s) 316
XhoI CTCGAG 1 cut(s) 1316
XmiI GTMKAC 1 cut(s) 997
XspI CTAG 2 cut(s) 69, 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.