PWWP domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G03140 |
| fragaria_vesca | FvH4_7g33590 FvH4_7g33593 FvH4_7g33620 |
| malus_domestica | MD01G1233800.v1.1 MD07G1305900.v1.1 |
| prunus_persica | Prupe.2G324000_v2.0.a1 Prupe.2G324000_v2.0.a1 Prupe.2G324000_v2.0.a1 Prupe.2G324000_v2.0.a1 Prupe.2G324000_v2.0.a1 Prupe.2G324000_v2.0.a1 |
| pyrus_communis | pycom01g24210 pycom07g27910 |
| rosa_chinensis | RchiOBHm_Chr1g0383861 |
| rosa_laevigata | RLG00000026090 |
| rosa_multiflora | Rmu_co8472165.1_g000001 Rmu_sc0005139.1_g000032 Rmu_sc0012471.1_g000004 |
| rosa_roxburghii | Rroxscaffold_4G00277190 |
| rosa_rugosa | Rorug01G0442600 |
| rosa_samantha | Rh1AG468600 Rh1BG426300 Rh1CG439000 Rh1DG459100 |
| rosa_wichuraiana | Rw1G040380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1585 |
| AccB1I | GGYRCC | 2 cut(s) | 1116, 2720 |
| AccI | GTMKAC | 4 cut(s) | 471, 562, 1342, 2696 |
| AccII | CGCG | 1 cut(s) | 2990 |
| AciI | CCGC | 8 cut(s) | 5, 877, 1226, 1544, 1580, 1826, 1955, 2389 |
| AclWI | GGATC | 4 cut(s) | 664, 707, 3223, 3236 |
| AcoI | YGGCCR | 2 cut(s) | 1432, 3150 |
| AcsI | RAATTY | 3 cut(s) | 190, 1883, 3252 |
| AcuI | CTGAAG | 6 cut(s) | 504, 930, 963, 2090, 3509, 3561 |
| AcvI | CACGTG | 1 cut(s) | 415 |
| AcyI | GRCGYC | 1 cut(s) | 2392 |
| AfaI | GTAC | 7 cut(s) | 212, 364, 1619, 1941, 2555, 3310, 3347 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 397, 722, 1810, 1927, 3008 |
| AflII | CTTAAG | 1 cut(s) | 3283 |
| AflIII | ACRYGT | 2 cut(s) | 2988, 3436 |
| AjiI | CACGTC | 2 cut(s) | 32, 1274 |
| AjnI | CCWGG | 6 cut(s) | 396, 1052, 1070, 2094, 2590, 3385 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 962, 994 |
| Alw21I | GWGCWC | 4 cut(s) | 1731, 1761, 2436, 2795 |
| Alw26I | GTCTC | 6 cut(s) | 665, 1881, 1884, 2290, 3152, 3345 |
| AlwI | GGATC | 4 cut(s) | 664, 707, 3223, 3236 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 674, 1701 |
| Ama87I | CYCGRG | 4 cut(s) | 1111, 1526, 2059, 2406 |
| AoxI | GGCC | 7 cut(s) | 388, 523, 1432, 1541, 2450, 2815, 3150 |
| ApoI | RAATTY | 3 cut(s) | 190, 1883, 3252 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 809, 841, 2599, 2631 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 223, 313, 2847, 3270 |
| AspA2I | CCTAGG | 1 cut(s) | 2557 |
| AspLEI | GCGC | 1 cut(s) | 58 |
| AspS9I | GGNCC | 4 cut(s) | 817, 932, 1050, 2092 |
| AsuC2I | CCSGG | 2 cut(s) | 1112, 1113 |
| AsuNHI | GCTAGC | 2 cut(s) | 1867, 2822 |
| AvaI | CYCGRG | 4 cut(s) | 1111, 1526, 2059, 2406 |
| AvaII | GGWCC | 4 cut(s) | 817, 932, 1050, 2092 |
| AvrII | CCTAGG | 1 cut(s) | 2557 |
| BaeGI | GKGCMC | 3 cut(s) | 1119, 1217, 1479 |
| BalI | TGGCCA | 2 cut(s) | 1434, 3152 |
| BamHI | GGATCC | 1 cut(s) | 3228 |
| BanI | GGYRCC | 2 cut(s) | 1116, 2720 |
| BanII | GRGCYC | 3 cut(s) | 1761, 2436, 2795 |
| BauI | CACGAG | 1 cut(s) | 1685 |
| BbrPI | CACGTG | 1 cut(s) | 415 |
| BbsI | GAAGAC | 2 cut(s) | 1065, 1455 |
| Bbv12I | GWGCWC | 4 cut(s) | 1731, 1761, 2436, 2795 |
| BbvCI | CCTCAGC | 1 cut(s) | 392 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2165, 2199, 2996, 3030 |
| BciT130I | CCWGG | 6 cut(s) | 398, 1054, 1072, 2096, 2592, 3387 |
| BciVI | GTATCC | 1 cut(s) | 3540 |
| BcnI | CCSGG | 2 cut(s) | 1112, 1113 |
| BcoDI | GTCTC | 6 cut(s) | 665, 1881, 1884, 2290, 3152, 3345 |
| BfaI | CTAG | 7 cut(s) | 1868, 2115, 2136, 2558, 2703, 2823, 2972 |
| BfmI | CTRYAG | 7 cut(s) | 1485, 1702, 2259, 3135, 3166, 3335, 3366 |
| BfrI | CTTAAG | 1 cut(s) | 3283 |
| BfuAI | ACCTGC | 1 cut(s) | 1585 |
| BfuI | GTATCC | 1 cut(s) | 3540 |
| BglII | AGATCT | 1 cut(s) | 3362 |
| BlnI | CCTAGG | 1 cut(s) | 2557 |
| BlpI | GCTNAGC | 2 cut(s) | 1755, 1799 |
| BmcAI | AGTACT | 1 cut(s) | 3310 |
| Bme1390I | CCNGG | 8 cut(s) | 398, 1054, 1072, 1112, 1113, 2096, 2592, 3387 |
| Bme18I | GGWCC | 4 cut(s) | 817, 932, 1050, 2092 |
| BmeT110I | CYCGRG | 4 cut(s) | 1111, 1526, 2059, 2406 |
| BmgBI | CACGTC | 2 cut(s) | 32, 1274 |
| BmgT120I | GGNCC | 4 cut(s) | 817, 932, 1050, 2092 |
| BmiI | GGNNCC | 7 cut(s) | 768, 819, 980, 1051, 1118, 2722, 3230 |
| BmrFI | CCNGG | 8 cut(s) | 398, 1054, 1072, 1112, 1113, 2096, 2592, 3387 |
| BmrI | ACTGGG | 1 cut(s) | 1920 |
| BmtI | GCTAGC | 2 cut(s) | 1871, 2826 |
| BmuI | ACTGGG | 1 cut(s) | 1920 |
| BpiI | GAAGAC | 2 cut(s) | 1065, 1455 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1748, 1780 |
| BpmI | CTGGAG | 2 cut(s) | 1692, 2067 |
| Bpu10I | CCTNAGC | 2 cut(s) | 392, 1899 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1755, 1799 |
| BpuEI | CTTGAG | 1 cut(s) | 86 |
| BpuMI | CCSGG | 2 cut(s) | 1112, 1113 |
| BsaAI | YACGTR | 1 cut(s) | 415 |
| BsaHI | GRCGYC | 1 cut(s) | 2392 |
| BsaJI | CCNNGG | 9 cut(s) | 397, 652, 1053, 1071, 1111, 1112, 2557, 3257, 3429 |
| BsaWI | WCCGGW | 1 cut(s) | 679 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 451, 481, 1363, 1393, 2789, 2819 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 397, 722, 1810, 1927, 3008 |
| Bse118I | RCCGGY | 1 cut(s) | 1750 |
| Bse1I | ACTGG | 4 cut(s) | 1377, 1572, 1915, 3399 |
| BseBI | CCWGG | 6 cut(s) | 398, 1054, 1072, 2096, 2592, 3387 |
| BseDI | CCNNGG | 9 cut(s) | 397, 652, 1053, 1071, 1111, 1112, 2557, 3257, 3429 |
| BseGI | GGATG | 9 cut(s) | 694, 1051, 1081, 1122, 1303, 1956, 2245, 2939, 3096 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 397, 722, 1810, 1927, 3008 |
| BseMII | CTCAG | 8 cut(s) | 168, 406, 561, 681, 945, 1746, 2637, 3524 |
| BseNI | ACTGG | 4 cut(s) | 1377, 1572, 1915, 3399 |
| BseRI | GAGGAG | 4 cut(s) | 472, 632, 779, 2291 |
| BseSI | GKGCMC | 3 cut(s) | 1119, 1217, 1479 |
| BseYI | CCCAGC | 4 cut(s) | 1083, 2765, 2801, 3122 |
| Bsh1236I | CGCG | 1 cut(s) | 2990 |
| BshFI | GGCC | 7 cut(s) | 390, 525, 1434, 1543, 2452, 2817, 3152 |
| BshNI | GGYRCC | 2 cut(s) | 1116, 2720 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1731, 1761, 2436, 2795 |
| BsiHKCI | CYCGRG | 4 cut(s) | 1111, 1526, 2059, 2406 |
| BsiSI | CCGG | 4 cut(s) | 680, 1112, 1751, 2075 |
| BslFI | GGGAC | 4 cut(s) | 1063, 1100, 1253, 1943 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 397, 722, 1810, 1927, 3008 |
| BsmAI | GTCTC | 6 cut(s) | 665, 1881, 1884, 2290, 3152, 3345 |
| BsmFI | GGGAC | 4 cut(s) | 1063, 1100, 1253, 1943 |
| BsmI | GAATGC | 5 cut(s) | 1085, 1494, 2713, 2964, 3283 |
| BsnI | GGCC | 7 cut(s) | 390, 525, 1434, 1543, 2452, 2817, 3152 |
| BsoBI | CYCGRG | 4 cut(s) | 1111, 1526, 2059, 2406 |
| Bsp1286I | GDGCHC | 7 cut(s) | 1119, 1217, 1479, 1731, 1761, 2436, 2795 |
| Bsp1407I | TGTACA | 3 cut(s) | 210, 1617, 1939 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1755, 1799 |
| Bsp19I | CCATGG | 1 cut(s) | 652 |
| BspACI | CCGC | 8 cut(s) | 5, 877, 1226, 1544, 1580, 1826, 1955, 2389 |
| BspANI | GGCC | 7 cut(s) | 390, 525, 1434, 1543, 2452, 2817, 3152 |
| BspCNI | CTCAG | 8 cut(s) | 167, 405, 562, 680, 946, 1747, 2638, 3523 |
| BspFNI | CGCG | 1 cut(s) | 2990 |
| BspHI | TCATGA | 1 cut(s) | 2292 |
| BspLI | GGNNCC | 7 cut(s) | 768, 819, 980, 1051, 1118, 2722, 3230 |
| BspMAI | CTGCAG | 2 cut(s) | 3339, 3370 |
| BspMI | ACCTGC | 1 cut(s) | 1585 |
| BspOI | GCTAGC | 2 cut(s) | 1871, 2826 |
| BspPI | GGATC | 4 cut(s) | 664, 707, 3223, 3236 |
| BspQI | GCTCTTC | 1 cut(s) | 1855 |
| BspT107I | GGYRCC | 2 cut(s) | 1116, 2720 |
| BspTI | CTTAAG | 1 cut(s) | 3283 |
| BsrFI | RCCGGY | 1 cut(s) | 1750 |
| BsrGI | TGTACA | 3 cut(s) | 210, 1617, 1939 |
| BsrI | ACTGG | 4 cut(s) | 1377, 1572, 1915, 3399 |
| BssAI | RCCGGY | 1 cut(s) | 1750 |
| BssECI | CCNNGG | 9 cut(s) | 397, 652, 1053, 1071, 1111, 1112, 2557, 3257, 3429 |
| BssNAI | GTATAC | 1 cut(s) | 472 |
| BssNI | GRCGYC | 1 cut(s) | 2392 |
| BssSI | CACGAG | 1 cut(s) | 1685 |
| BssT1I | CCWWGG | 4 cut(s) | 652, 2557, 3257, 3429 |
| Bst1107I | GTATAC | 1 cut(s) | 472 |
| Bst2BI | CACGAG | 1 cut(s) | 1685 |
| Bst2UI | CCWGG | 6 cut(s) | 398, 1054, 1072, 2096, 2592, 3387 |
| Bst4CI | ACNGT | 8 cut(s) | 78, 119, 338, 1486, 1703, 2754, 3167, 3313 |
| BstACI | GRCGYC | 1 cut(s) | 2392 |
| BstAFI | CTTAAG | 1 cut(s) | 3283 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3487 |
| BstAUI | TGTACA | 3 cut(s) | 210, 1617, 1939 |
| BstBAI | YACGTR | 1 cut(s) | 415 |
| BstDSI | CCRYGG | 1 cut(s) | 652 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1808, 3006 |
| BstF5I | GGATG | 9 cut(s) | 694, 1051, 1081, 1122, 1303, 1956, 2245, 2939, 3096 |
| BstFNI | CGCG | 1 cut(s) | 2990 |
| BstHHI | GCGC | 1 cut(s) | 58 |
| BstMAI | GTCTC | 6 cut(s) | 665, 1881, 1884, 2290, 3152, 3345 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 836, 1562, 1568, 1577, 1820, 1829, 2823, 3487 |
| BstNI | CCWGG | 6 cut(s) | 398, 1054, 1072, 2096, 2592, 3387 |
| BstNSI | RCATGY | 5 cut(s) | 569, 799, 1652, 2964, 3440 |
| BstSCI | CCNGG | 8 cut(s) | 396, 1052, 1070, 1110, 1111, 2094, 2590, 3385 |
| BstSFI | CTRYAG | 7 cut(s) | 1485, 1702, 2259, 3135, 3166, 3335, 3366 |
| BstSLI | GKGCMC | 3 cut(s) | 1119, 1217, 1479 |
| BstUI | CGCG | 1 cut(s) | 2990 |
| BstV2I | GAAGAC | 2 cut(s) | 1065, 1455 |
| BstX2I | RGATCY | 4 cut(s) | 656, 712, 3228, 3362 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1400 |
| BstYI | RGATCY | 4 cut(s) | 656, 712, 3228, 3362 |
| BstZ17I | GTATAC | 1 cut(s) | 472 |
| BsuI | GTATCC | 1 cut(s) | 3540 |
| BsuRI | GGCC | 7 cut(s) | 390, 525, 1434, 1543, 2452, 2817, 3152 |
| BtgI | CCRYGG | 1 cut(s) | 652 |
| BtrI | CACGTC | 2 cut(s) | 32, 1274 |
| BtsCI | GGATG | 9 cut(s) | 694, 1051, 1081, 1122, 1303, 1956, 2245, 2939, 3096 |
| BtsIMutI | CAGTG | 3 cut(s) | 2750, 3121, 3307 |
| BveI | ACCTGC | 1 cut(s) | 1585 |
| CaiI | CAGNNNCTG | 2 cut(s) | 674, 1701 |
| CciI | TCATGA | 1 cut(s) | 2292 |
| CfoI | GCGC | 1 cut(s) | 58 |
| Cfr10I | RCCGGY | 1 cut(s) | 1750 |
| Cfr13I | GGNCC | 4 cut(s) | 817, 932, 1050, 2092 |
| Cfr9I | CCCGGG | 1 cut(s) | 1111 |
| CseI | GACGC | 2 cut(s) | 2381, 2979 |
| Csp6I | GTAC | 7 cut(s) | 211, 363, 1618, 1940, 2554, 3309, 3346 |
| CviQI | GTAC | 7 cut(s) | 211, 363, 1618, 1940, 2554, 3309, 3346 |
| EaeI | YGGCCR | 2 cut(s) | 1432, 3150 |
| EciI | GGCGGA | 1 cut(s) | 1970 |
| Ecl136II | GAGCTC | 3 cut(s) | 1759, 2434, 2793 |
| Eco130I | CCWWGG | 4 cut(s) | 652, 2557, 3257, 3429 |
| Eco147I | AGGCCT | 2 cut(s) | 2452, 2817 |
| Eco24I | GRGCYC | 3 cut(s) | 1761, 2436, 2795 |
| Eco32I | GATATC | 2 cut(s) | 537, 2066 |
| Eco47I | GGWCC | 4 cut(s) | 817, 932, 1050, 2092 |
| Eco53kI | GAGCTC | 3 cut(s) | 1759, 2434, 2793 |
| Eco57I | CTGAAG | 6 cut(s) | 504, 930, 963, 2090, 3509, 3561 |
| Eco72I | CACGTG | 1 cut(s) | 415 |
| Eco88I | CYCGRG | 4 cut(s) | 1111, 1526, 2059, 2406 |
| EcoICRI | GAGCTC | 3 cut(s) | 1759, 2434, 2793 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1808, 3006 |
| EcoO109I | RGGNCCY | 2 cut(s) | 817, 1050 |
| EcoRI | GAATTC | 2 cut(s) | 190, 3252 |
| EcoRII | CCWGG | 6 cut(s) | 396, 1052, 1070, 2094, 2590, 3385 |
| EcoRV | GATATC | 2 cut(s) | 537, 2066 |
| EcoT14I | CCWWGG | 4 cut(s) | 652, 2557, 3257, 3429 |
| EcoT22I | ATGCAT | 1 cut(s) | 2966 |
| EcoT38I | GRGCYC | 3 cut(s) | 1761, 2436, 2795 |
| ErhI | CCWWGG | 4 cut(s) | 652, 2557, 3257, 3429 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3401, 3433 |
| FaqI | GGGAC | 4 cut(s) | 1063, 1100, 1253, 1943 |
| FauI | CCCGC | 1 cut(s) | 884 |
| FblI | GTMKAC | 4 cut(s) | 471, 562, 1342, 2696 |
| FokI | GGATG | 9 cut(s) | 701, 1058, 1088, 1109, 1310, 1963, 2232, 2946, 3103 |
| FriOI | GRGCYC | 3 cut(s) | 1761, 2436, 2795 |
| FspBI | CTAG | 7 cut(s) | 1868, 2115, 2136, 2558, 2703, 2823, 2972 |
| GlaI | GCGC | 1 cut(s) | 57 |
| GsaI | CCCAGC | 4 cut(s) | 1087, 2769, 2805, 3126 |
| GsuI | CTGGAG | 2 cut(s) | 1692, 2067 |
| HaeIII | GGCC | 7 cut(s) | 390, 525, 1434, 1543, 2452, 2817, 3152 |
| HapII | CCGG | 4 cut(s) | 680, 1112, 1751, 2075 |
| HgaI | GACGC | 2 cut(s) | 2381, 2979 |
| HhaI | GCGC | 1 cut(s) | 58 |
| Hin1I | GRCGYC | 1 cut(s) | 2392 |
| Hin6I | GCGC | 1 cut(s) | 56 |
| HinP1I | GCGC | 1 cut(s) | 56 |
| HincII | GTYRAC | 2 cut(s) | 99, 1643 |
| HindII | GTYRAC | 2 cut(s) | 99, 1643 |
| HindIII | AAGCTT | 2 cut(s) | 751, 1716 |
| HpaII | CCGG | 4 cut(s) | 680, 1112, 1751, 2075 |
| Hpy99I | CGWCG | 1 cut(s) | 36 |
| HpyCH4III | ACNGT | 8 cut(s) | 78, 119, 338, 1486, 1703, 2754, 3167, 3313 |
| HpyCH4IV | ACGT | 4 cut(s) | 31, 414, 745, 1273 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 836, 1562, 1568, 1577, 1820, 1829, 2823, 3487 |
| HpySE526I | ACGT | 4 cut(s) | 31, 414, 745, 1273 |
| Hsp92I | GRCGYC | 1 cut(s) | 2392 |
| HspAI | GCGC | 1 cut(s) | 56 |
| LguI | GCTCTTC | 1 cut(s) | 1855 |
| LmnI | GCTCC | 6 cut(s) | 427, 437, 766, 1969, 2790, 2810 |
| MaeI | CTAG | 7 cut(s) | 1868, 2115, 2136, 2558, 2703, 2823, 2972 |
| MaeII | ACGT | 4 cut(s) | 31, 414, 745, 1273 |
| MfeI | CAATTG | 3 cut(s) | 354, 897, 1197 |
| MflI | RGATCY | 4 cut(s) | 656, 712, 3228, 3362 |
| MhlI | GDGCHC | 7 cut(s) | 1119, 1217, 1479, 1731, 1761, 2436, 2795 |
| MlsI | TGGCCA | 2 cut(s) | 1434, 3152 |
| MluI | ACGCGT | 1 cut(s) | 2988 |
| MluNI | TGGCCA | 2 cut(s) | 1434, 3152 |
| MlyI | GAGTC | 7 cut(s) | 279, 479, 629, 1275, 1469, 2290, 2854 |
| MmeI | TCCRAC | 3 cut(s) | 2820, 2883, 2919 |
| Mox20I | TGGCCA | 2 cut(s) | 1434, 3152 |
| Mph1103I | ATGCAT | 1 cut(s) | 2966 |
| MroXI | GAANNNNTTC | 4 cut(s) | 223, 313, 2847, 3270 |
| MscI | TGGCCA | 2 cut(s) | 1434, 3152 |
| MseI | TTAA | 5 cut(s) | 1361, 2331, 2996, 3284, 3359 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1499, 2718 |
| Msp20I | TGGCCA | 2 cut(s) | 1434, 3152 |
| MspA1I | CMGCKG | 2 cut(s) | 482, 2389 |
| MspCI | CTTAAG | 1 cut(s) | 3283 |
| MspI | CCGG | 4 cut(s) | 680, 1112, 1751, 2075 |
| MspR9I | CCNGG | 8 cut(s) | 398, 1054, 1072, 1112, 1113, 2096, 2592, 3387 |
| MunI | CAATTG | 3 cut(s) | 354, 897, 1197 |
| Mva1269I | GAATGC | 5 cut(s) | 1085, 1494, 2713, 2964, 3283 |
| MvaI | CCWGG | 6 cut(s) | 398, 1054, 1072, 2096, 2592, 3387 |
| MvnI | CGCG | 1 cut(s) | 2990 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 836, 1562, 1568, 1577, 1820, 1829, 2823, 3487 |
| NciI | CCSGG | 2 cut(s) | 1112, 1113 |
| NcoI | CCATGG | 1 cut(s) | 652 |
| NheI | GCTAGC | 2 cut(s) | 1867, 2822 |
| NlaIV | GGNNCC | 7 cut(s) | 768, 819, 980, 1051, 1118, 2722, 3230 |
| NmuCI | GTSAC | 3 cut(s) | 250, 410, 1379 |
| NsiI | ATGCAT | 1 cut(s) | 2966 |
| NspI | RCATGY | 5 cut(s) | 569, 799, 1652, 2964, 3440 |
| PaeR7I | CTCGAG | 2 cut(s) | 1526, 2406 |
| PagI | TCATGA | 1 cut(s) | 2292 |
| PceI | AGGCCT | 2 cut(s) | 2452, 2817 |
| PciI | ACATGT | 1 cut(s) | 3436 |
| PciSI | GCTCTTC | 1 cut(s) | 1855 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2389 |
| PctI | GAATGC | 5 cut(s) | 1085, 1494, 2713, 2964, 3283 |
| PdmI | GAANNNNTTC | 4 cut(s) | 223, 313, 2847, 3270 |
| PflFI | GACNNNGTC | 1 cut(s) | 2863 |
| PfoI | TCCNGGA | 1 cut(s) | 2590 |
| PleI | GAGTC | 7 cut(s) | 279, 479, 628, 1274, 1468, 2289, 2854 |
| PmaCI | CACGTG | 1 cut(s) | 415 |
| PmlI | CACGTG | 1 cut(s) | 415 |
| PpsI | GAGTC | 7 cut(s) | 279, 479, 628, 1274, 1468, 2289, 2854 |
| Ppu21I | YACGTR | 1 cut(s) | 415 |
| PpuMI | RGGWCCY | 2 cut(s) | 817, 1050 |
| PscI | ACATGT | 1 cut(s) | 3436 |
| Psp124BI | GAGCTC | 3 cut(s) | 1761, 2436, 2795 |
| Psp5II | RGGWCCY | 2 cut(s) | 817, 1050 |
| Psp6I | CCWGG | 6 cut(s) | 396, 1052, 1070, 2094, 2590, 3385 |
| PspCI | CACGTG | 1 cut(s) | 415 |
| PspFI | CCCAGC | 4 cut(s) | 1083, 2765, 2801, 3122 |
| PspGI | CCWGG | 6 cut(s) | 396, 1052, 1070, 2094, 2590, 3385 |
| PspN4I | GGNNCC | 7 cut(s) | 768, 819, 980, 1051, 1118, 2722, 3230 |
| PspPI | GGNCC | 4 cut(s) | 817, 932, 1050, 2092 |
| PspPPI | RGGWCCY | 2 cut(s) | 817, 1050 |
| PspXI | VCTCGAGB | 1 cut(s) | 2406 |
| PstI | CTGCAG | 2 cut(s) | 3339, 3370 |
| PstNI | CAGNNNCTG | 2 cut(s) | 674, 1701 |
| PsuI | RGATCY | 4 cut(s) | 656, 712, 3228, 3362 |
| PsyI | GACNNNGTC | 1 cut(s) | 2863 |
| PvuII | CAGCTG | 1 cut(s) | 482 |
| RsaI | GTAC | 7 cut(s) | 212, 364, 1619, 1941, 2555, 3310, 3347 |
| RsaNI | GTAC | 7 cut(s) | 211, 363, 1618, 1940, 2554, 3309, 3346 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1499, 2718 |
| SacI | GAGCTC | 3 cut(s) | 1761, 2436, 2795 |
| SapI | GCTCTTC | 1 cut(s) | 1855 |
| SaqAI | TTAA | 5 cut(s) | 1361, 2331, 2996, 3284, 3359 |
| Sau96I | GGNCC | 4 cut(s) | 817, 932, 1050, 2092 |
| ScaI | AGTACT | 1 cut(s) | 3310 |
| SchI | GAGTC | 7 cut(s) | 279, 479, 629, 1275, 1469, 2290, 2854 |
| ScrFI | CCNGG | 8 cut(s) | 398, 1054, 1072, 1112, 1113, 2096, 2592, 3387 |
| SduI | GDGCHC | 7 cut(s) | 1119, 1217, 1479, 1731, 1761, 2436, 2795 |
| SfcI | CTRYAG | 7 cut(s) | 1485, 1702, 2259, 3135, 3166, 3335, 3366 |
| Sfr274I | CTCGAG | 2 cut(s) | 1526, 2406 |
| SinI | GGWCC | 4 cut(s) | 817, 932, 1050, 2092 |
| SlaI | CTCGAG | 2 cut(s) | 1526, 2406 |
| SmaI | CCCGGG | 1 cut(s) | 1113 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1499, 2718 |
| SmlI | CTYRAG | 4 cut(s) | 65, 1526, 2406, 3283 |
| SmoI | CTYRAG | 4 cut(s) | 65, 1526, 2406, 3283 |
| SseBI | AGGCCT | 2 cut(s) | 2452, 2817 |
| SsiI | CCGC | 8 cut(s) | 5, 877, 1226, 1544, 1580, 1826, 1955, 2389 |
| SspMI | CTAG | 7 cut(s) | 1868, 2115, 2136, 2558, 2703, 2823, 2972 |
| SstI | GAGCTC | 3 cut(s) | 1761, 2436, 2795 |
| StuI | AGGCCT | 2 cut(s) | 2452, 2817 |
| StyD4I | CCNGG | 8 cut(s) | 396, 1052, 1070, 1110, 1111, 2094, 2590, 3385 |
| StyI | CCWWGG | 4 cut(s) | 652, 2557, 3257, 3429 |
| TaaI | ACNGT | 8 cut(s) | 78, 119, 338, 1486, 1703, 2754, 3167, 3313 |
| TaiI | ACGT | 4 cut(s) | 34, 417, 748, 1276 |
| TaqI | TCGA | 8 cut(s) | 34, 259, 1009, 1332, 1527, 2407, 3006, 3250 |
| TatI | WGTACW | 4 cut(s) | 210, 1617, 1939, 3308 |
| TauI | GCSGC | 4 cut(s) | 7, 1546, 1829, 2392 |
| Tru1I | TTAA | 5 cut(s) | 1361, 2331, 2996, 3284, 3359 |
| Tru9I | TTAA | 5 cut(s) | 1361, 2331, 2996, 3284, 3359 |
| TscAI | CASTG | 3 cut(s) | 2757, 3121, 3307 |
| TseFI | GTSAC | 3 cut(s) | 250, 410, 1379 |
| Tsp45I | GTSAC | 3 cut(s) | 250, 410, 1379 |
| TspGWI | ACGGA | 2 cut(s) | 435, 2008 |
| TspMI | CCCGGG | 1 cut(s) | 1111 |
| TspRI | CASTG | 3 cut(s) | 2757, 3121, 3307 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2863 |
| Vha464I | CTTAAG | 1 cut(s) | 3283 |
| VpaK11BI | GGWCC | 4 cut(s) | 817, 932, 1050, 2092 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1808, 3006 |
| XapI | RAATTY | 3 cut(s) | 190, 1883, 3252 |
| XbaI | TCTAGA | 1 cut(s) | 2702 |
| XceI | RCATGY | 5 cut(s) | 569, 799, 1652, 2964, 3440 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 182 |
| XhoI | CTCGAG | 2 cut(s) | 1526, 2406 |
| XmaI | CCCGGG | 1 cut(s) | 1111 |
| XmaJI | CCTAGG | 1 cut(s) | 2557 |
| XmiI | GTMKAC | 4 cut(s) | 471, 562, 1342, 2696 |
| XmnI | GAANNNNTTC | 4 cut(s) | 223, 313, 2847, 3270 |
| XspI | CTAG | 7 cut(s) | 1868, 2115, 2136, 2558, 2703, 2823, 2972 |
| ZrmI | AGTACT | 1 cut(s) | 3310 |
| Zsp2I | ATGCAT | 1 cut(s) | 2966 |