Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009523

Physical Location & Seq

Genomic Coordinates Forward (+)

1756263 .. 1758514

Gene Structure 2252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGAGATCCCGCAGCAGCAGCAGCAGATTCAAGTCGATCTGGGTAATCTCATGGCCTTCGACCCTCATCACAGCTTCCCCTCTAATCCCTCCTCCAGGGAGGAATTAGTGAAGGAATGTATAACGAAAGGGACTGAGTTGGTTCAAGCTATTGCAAATAGTCTTTTCAACTTACCTTCAACTGAAGATATAGACGGTCCAATTGTGCAATTGCCCCGTCCCGAAACTAAACTGCCAAGACAGAAGCATCTTCCAGTGCCTAAACCTCCAACGAAATGGGAAACTTTTGCCAAAACAAAAGGTATCAAGAATCGTAAAAGAGACAAGATTGCATATGATGAGCCGACTGAAACTTGGAAACGTCGCTTTGGATATGATCGTGCAAATGATGAGAATAGTGTACCTATCATTGAGGCGAAGGAGACTGATGTGCCAGGGGAGGATCCTTTTGCTAAAAGGCAAGAGGATAAAAAGAAAAGAGTTGAAAAACAAGACAAGAATAGGTTGCAGAACTTGAAGCAAGCTGCAAAAGTCGGTGCTTTACCAAGCCATGTTCAACTGGCTGCCACACGATTGCCCATAACGGGAACCCAGTCTGCAACGAAGAAGTTTTCTAAAGATGAACTGGGTAATGTAGCGGGAATAGCAGCAACTGCAACGGCCAGTGGTGGTAAGTTTGACAAGAAATTGCCAGGGGAAAAACCTCCTAAACATAAAGGAAAGTTCCGCAAGTTTTTACCAGTTGTAGAAGGAAAAGGGAAACACTCGCAAGAGCAGGAACAAACAGATAAAGTACTGAACAAGCTAATCTCTAAGAATTCCCATGAGATATTTAACGTTGACAAGGCTGTTAACATGTACAACGTCAAGAAGGACAAGAAGCGAAAGAACAAGCCAGGGATGTCCTCAAGCTCGTTAAAACCGAAGAAGAACATCCAAAAGAAGCCATTAAAGAAGGGATCTTCATCCAAAGGAAAGGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015711 GO:0015748 GO:0015780 GO:0015833 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030687 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033750 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0042274 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051503 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055085 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0090304 GO:0090305 GO:0090480 GO:0090501 GO:0090502 GO:1901264 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRS1

Protein Analysis

329

Amino Acids

36.76

Weight (kDa)

9.95

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRS1	PF04939	10 - 172	2.1e-53	Ribosome biogenesis regulatory protein (RRS1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37990
fragaria_vesca	FvH4_1g03500
malus_domestica	MD02G1034000.v1.1 MD15G1174800.v1.1
prunus_persica	Prupe.7G241100_v2.0.a1
pyrus_communis	pycom02g02780 pycom15g15630
rosa_chinensis	RchiOBHm_Chr2g0088711
rosa_laevigata	RLG00000015978 RLG00000034377
rosa_multiflora	Rmu_sc0006835.1_g000005 Rmu_sc0006835.1_g000006 Rmu_sc0015442.1_g000017
rosa_roxburghii	Rroxscaffold_2G00152380
rosa_rugosa	Rorug01G0486300 Rorug01G0486400
rosa_samantha	Rh2AG041600 Rh2BG040300 Rh2CG041000 Rh2DG040700 Rh5BG314200
rosa_wichuraiana	Rw2G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	11, 638, 727
AclI	AACGTT	1 cut(s)	837
AclWI	GGATC	3 cut(s)	437, 450, 967
AcoI	YGGCCR	1 cut(s)	660
AcsI	RAATTY	1 cut(s)	817
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	3 cut(s)	402, 795, 860
AfiI	CCNNNNNNNGG	2 cut(s)	96, 584
AflIII	ACRYGT	1 cut(s)	855
AgsI	TTSAA	7 cut(s)	32, 146, 169, 180, 485, 517, 557
AjnI	CCWGG	4 cut(s)	95, 433, 691, 895
AluBI	AGCT	5 cut(s)	75, 149, 524, 805, 912
AluI	AGCT	5 cut(s)	75, 149, 524, 805, 912
Alw26I	GTCTC	2 cut(s)	315, 416
AlwI	GGATC	3 cut(s)	437, 450, 967
AlwNI	CAGNNNCTG	1 cut(s)	653
AoxI	GGCC	2 cut(s)	54, 660
ApeKI	GCWGC	7 cut(s)	13, 16, 19, 22, 524, 563, 647
ApoI	RAATTY	1 cut(s)	817
AspS9I	GGNCC	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	197
BamHI	GGATCC	1 cut(s)	442
BbvI	GCAGC	7 cut(s)	25, 28, 31, 34, 511, 550, 659
BceAI	ACGGC	1 cut(s)	675
BciT130I	CCWGG	4 cut(s)	97, 435, 693, 897
BcoDI	GTCTC	2 cut(s)	315, 416
BisI	GCNGC	7 cut(s)	14, 17, 20, 23, 525, 564, 648
BlsI	GCNGC	7 cut(s)	15, 18, 21, 24, 526, 565, 649
BmcAI	AGTACT	1 cut(s)	795
Bme1390I	CCNGG	4 cut(s)	97, 435, 693, 897
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	2 cut(s)	444, 589
BmrFI	CCNGG	4 cut(s)	97, 435, 693, 897
BmrI	ACTGGG	2 cut(s)	586, 635
BmsI	GCATC	1 cut(s)	256
BmuI	ACTGGG	2 cut(s)	586, 635
BpmI	CTGGAG	1 cut(s)	79
BpuEI	CTTGAG	1 cut(s)	892
BsaBI	GATNNNNATC	1 cut(s)	964
BsaJI	CCNNGG	4 cut(s)	96, 434, 692, 896
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 584
Bse1I	ACTGG	6 cut(s)	254, 564, 592, 630, 663, 740
Bse8I	GATNNNNATC	1 cut(s)	964
BseBI	CCWGG	4 cut(s)	97, 435, 693, 897
BseDI	CCNNGG	4 cut(s)	96, 434, 692, 896
BseGI	GGATG	3 cut(s)	906, 933, 965
BseJI	GATNNNNATC	1 cut(s)	964
BseLI	CCNNNNNNNGG	2 cut(s)	96, 584
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	6 cut(s)	254, 564, 592, 630, 663, 740
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	7 cut(s)	25, 28, 31, 34, 511, 550, 659
BshFI	GGCC	2 cut(s)	56, 662
BslFI	GGGAC	2 cut(s)	145, 204
BslI	CCNNNNNNNGG	2 cut(s)	96, 584
BsmAI	GTCTC	2 cut(s)	315, 416
BsmFI	GGGAC	2 cut(s)	145, 204
BsnI	GGCC	2 cut(s)	56, 662
Bsp1407I	TGTACA	1 cut(s)	858
Bsp143I	GATC	5 cut(s)	6, 37, 376, 442, 959
BspACI	CCGC	3 cut(s)	11, 638, 727
BspANI	GGCC	2 cut(s)	56, 662
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	444, 589
BspPI	GGATC	3 cut(s)	437, 450, 967
BsrGI	TGTACA	1 cut(s)	858
BsrI	ACTGG	6 cut(s)	254, 564, 592, 630, 663, 740
BssECI	CCNNGG	4 cut(s)	96, 434, 692, 896
BssMI	GATC	5 cut(s)	6, 37, 376, 442, 959
Bst2UI	CCWGG	4 cut(s)	97, 435, 693, 897
Bst4CI	ACNGT	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstAUI	TGTACA	1 cut(s)	858
BstC8I	GCNNGC	1 cut(s)	522
BstDEI	CTNAG	2 cut(s)	135, 813
BstENI	CCTNNNNNAGG	1 cut(s)	94
BstF5I	GGATG	3 cut(s)	906, 933, 965
BstKTI	GATC	5 cut(s)	9, 40, 379, 445, 962
BstMAI	GTCTC	2 cut(s)	315, 416
BstMBI	GATC	5 cut(s)	6, 37, 376, 442, 959
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 22, 644, 653
BstNI	CCWGG	4 cut(s)	97, 435, 693, 897
BstNSI	RCATGY	1 cut(s)	859
BstSCI	CCNGG	4 cut(s)	95, 433, 691, 895
BstV1I	GCAGC	7 cut(s)	25, 28, 31, 34, 511, 550, 659
BstX2I	RGATCY	3 cut(s)	6, 442, 959
BstXI	CCANNNNNNTGG	1 cut(s)	276
BstYI	RGATCY	3 cut(s)	6, 442, 959
BsuRI	GGCC	2 cut(s)	56, 662
BtsCI	GGATG	3 cut(s)	906, 933, 965
BtsIMutI	CAGTG	2 cut(s)	261, 670
Cac8I	GCNNGC	1 cut(s)	522
CaiI	CAGNNNCTG	1 cut(s)	653
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	3 cut(s)	401, 794, 859
CviAII	CATG	4 cut(s)	52, 551, 824, 856
CviQI	GTAC	3 cut(s)	401, 794, 859
DdeI	CTNAG	2 cut(s)	135, 813
DpnI	GATC	5 cut(s)	8, 39, 378, 444, 961
DpnII	GATC	5 cut(s)	6, 37, 376, 442, 959
EaeI	YGGCCR	1 cut(s)	660
Eco47I	GGWCC	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	204
EcoNI	CCTNNNNNAGG	1 cut(s)	94
EcoRI	GAATTC	1 cut(s)	817
EcoRII	CCWGG	4 cut(s)	95, 433, 691, 895
FaeI	CATG	4 cut(s)	55, 554, 827, 859
FaqI	GGGAC	2 cut(s)	145, 204
FatI	CATG	4 cut(s)	51, 550, 823, 855
FauI	CCCGC	2 cut(s)	18, 631
FauNDI	CATATG	1 cut(s)	334
Fnu4HI	GCNGC	7 cut(s)	14, 17, 20, 23, 525, 564, 648
FokI	GGATG	3 cut(s)	913, 920, 952
Fsp4HI	GCNGC	7 cut(s)	14, 17, 20, 23, 525, 564, 648
GluI	GCNGC	7 cut(s)	14, 17, 20, 23, 525, 564, 648
GsuI	CTGGAG	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	56, 662
Hin1II	CATG	4 cut(s)	55, 554, 827, 859
HincII	GTYRAC	2 cut(s)	841, 853
HindII	GTYRAC	2 cut(s)	841, 853
HinfI	GANTC	2 cut(s)	28, 310
HpaI	GTTAAC	1 cut(s)	853
Hpy166II	GTNNAC	3 cut(s)	401, 841, 853
Hpy188III	TCNNGA	3 cut(s)	221, 307, 868
Hpy8I	GTNNAC	3 cut(s)	401, 841, 853
Hpy99I	CGWCG	1 cut(s)	366
HpyAV	CCTTC	7 cut(s)	67, 106, 186, 412, 743, 865, 949
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	3 cut(s)	361, 837, 864
HpyCH4V	TGCA	8 cut(s)	155, 208, 332, 383, 508, 527, 599, 656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 22, 644, 653
HpyF3I	CTNAG	2 cut(s)	135, 813
HpySE526I	ACGT	3 cut(s)	361, 837, 864
Hsp92II	CATG	4 cut(s)	55, 554, 827, 859
KspAI	GTTAAC	1 cut(s)	853
Kzo9I	GATC	5 cut(s)	6, 37, 376, 442, 959
Lsp1109I	GCAGC	7 cut(s)	25, 28, 31, 34, 511, 550, 659
LweI	GCATC	1 cut(s)	256
MaeII	ACGT	3 cut(s)	361, 837, 864
MalI	GATC	5 cut(s)	8, 39, 378, 444, 961
MboI	GATC	5 cut(s)	6, 37, 376, 442, 959
MboII	GAAGA	6 cut(s)	197, 242, 616, 937, 940, 954
MfeI	CAATTG	2 cut(s)	201, 209
MflI	RGATCY	3 cut(s)	6, 442, 959
MluCI	AATT	5 cut(s)	104, 201, 209, 686, 817
MmeI	TCCRAC	1 cut(s)	293
MseI	TTAA	4 cut(s)	834, 852, 917, 950
MspR9I	CCNGG	4 cut(s)	97, 435, 693, 897
MunI	CAATTG	2 cut(s)	201, 209
MvaI	CCWGG	4 cut(s)	97, 435, 693, 897
MwoI	GCNNNNNNNGC	4 cut(s)	19, 22, 644, 653
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	5 cut(s)	6, 37, 376, 442, 959
NlaIII	CATG	4 cut(s)	55, 554, 827, 859
NlaIV	GGNNCC	2 cut(s)	444, 589
NspI	RCATGY	1 cut(s)	859
PciI	ACATGT	1 cut(s)	855
PcsI	WCGNNNNNNNCGW	1 cut(s)	920
PfeI	GAWTC	2 cut(s)	28, 310
PkrI	GCNGC	7 cut(s)	15, 18, 21, 24, 526, 565, 649
PscI	ACATGT	1 cut(s)	855
Psp1406I	AACGTT	1 cut(s)	837
Psp6I	CCWGG	4 cut(s)	95, 433, 691, 895
PspGI	CCWGG	4 cut(s)	95, 433, 691, 895
PspN4I	GGNNCC	2 cut(s)	444, 589
PspPI	GGNCC	1 cut(s)	197
PstNI	CAGNNNCTG	1 cut(s)	653
PsuI	RGATCY	3 cut(s)	6, 442, 959
RsaI	GTAC	3 cut(s)	402, 795, 860
RsaNI	GTAC	3 cut(s)	401, 794, 859
SaqAI	TTAA	4 cut(s)	834, 852, 917, 950
SatI	GCNGC	7 cut(s)	14, 17, 20, 23, 525, 564, 648
Sau3AI	GATC	5 cut(s)	6, 37, 376, 442, 959
Sau96I	GGNCC	1 cut(s)	197
ScaI	AGTACT	1 cut(s)	795
ScrFI	CCNGG	4 cut(s)	97, 435, 693, 897
SfaNI	GCATC	1 cut(s)	256
SinI	GGWCC	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	907
SmoI	CTYRAG	1 cut(s)	907
Sse9I	AATT	5 cut(s)	104, 201, 209, 686, 817
SsiI	CCGC	3 cut(s)	11, 638, 727
StyD4I	CCNGG	4 cut(s)	95, 433, 691, 895
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	3 cut(s)	364, 840, 867
TaqI	TCGA	2 cut(s)	36, 60
TasI	AATT	5 cut(s)	104, 201, 209, 686, 817
TatI	WGTACW	2 cut(s)	793, 858
TfiI	GAWTC	2 cut(s)	28, 310
Tru1I	TTAA	4 cut(s)	834, 852, 917, 950
Tru9I	TTAA	4 cut(s)	834, 852, 917, 950
TscAI	CASTG	2 cut(s)	261, 670
TseI	GCWGC	7 cut(s)	13, 16, 19, 22, 524, 563, 647
TspDTI	ATGAA	2 cut(s)	636, 954
TspRI	CASTG	2 cut(s)	261, 670
VpaK11BI	GGWCC	1 cut(s)	197
XagI	CCTNNNNNAGG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	817
XceI	RCATGY	1 cut(s)	859
ZrmI	AGTACT	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.