Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007422

Physical Location & Seq

Genomic Coordinates Reverse (-)

5184221 .. 5187020

Gene Structure 2800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCACCGTGCAACGTCTCTTTTTATCCCTGTCAGAGCCCCTAATTACTGCTTTCTACCATTTCATTTCTACACCTACCATCATTTGCTTTGCCCTCCGCTGTCGTTTTCTTCATTTGAGGTCTGTGTTTTAGGTGATTTAGCAACTGGGATTTGGTTCCTATTTGGAATGGCAGCTCCTTCTGGTAGTTCTGCTTCTGTGCCGTCTCTGCCACCGCCACGCCCAAAGTCGCCGCCGCAGTATCCTGATTTGTATGGGAAGCGCAGAGAAACAGCCAGGGTTCAGATGCTCGAGAGGGAAATTGGTTTTCTTGAGGAGGAACTAAAATCTGTTGAACGGCTTCAACCTGCTTCCAGATGCTGCAAAGAGGTTGTTGATTTTGTGGTTGCAAACCCAGATCCGTTAATACCTACGAATCAAAAGAAACGCAGGTCATGCCGCTTCTGGAAATGGCTATGCGGAATGCCCTGTTTCAGCTGCTCATGGATTTTCTGTTGCTGCTGCGACGGGTGCTCTCTCCGCCTAGAAATGCCACGCTGCTGTGACTGCAGTCCGTGTAACTGTAATCCATGTGCCTGCTGTCCGCTACCAAAGTGGCGATGTTGCTGCTCATGTCCCCGCTCCAACTGCTGCAAAAATATTTCATGCGGCAGAAATTGTTGCATTTTCCCGCCCTGTTCATGTCCCGATTGCTCTTGCTGTTGCAAATGGAAATGCTCTTGCCCTAAATGTCCGAAGGTACGACCGTGTTGCTGTTGTAGAATAACCTGTTGCAACCCTTGTAGTATATGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0033993 GO:0042221 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-gamma

Protein Analysis

266

Amino Acids

29.87

Weight (kDa)

8.59

Isoelectric Point (pI)

63.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-gamma	PF00631	92 - 158	1.2e-11	GGL domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20635 AT5G20635
fragaria_vesca	FvH4_1g08850 FvH4_1g08850
malus_domestica	MD02G1093600.v1.1 MD15G1218900.v1.1
prunus_persica	Prupe.7G197000_v2.0.a1 Prupe.7G197000_v2.0.a1 Prupe.7G197000_v2.0.a1 Prupe.7G197000_v2.0.a1
pyrus_communis	pycom02g07380 pycom15g19410
rosa_chinensis	RchiOBHm_Chr2g0095321 RchiOBHm_Chr6g0246401 RchiOBHm_Chr6g0246621 RchiOBHm_Chr6g0246681
rosa_laevigata	RLG00000016554
rosa_roxburghii	Rroxscaffold_2G00146480
rosa_rugosa	Rorug02G0049300
rosa_samantha	Rh2AG097700 Rh2BG098900 Rh2CG101000 Rh2DG098600
rosa_wichuraiana	Rw2G007370 Rw6G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	355, 420
AccBSI	CCGCTC	1 cut(s)	621
AclWI	GGATC	1 cut(s)	392
AfaI	GTAC	1 cut(s)	741
AgsI	TTSAA	2 cut(s)	335, 344
AjnI	CCWGG	1 cut(s)	275
AluBI	AGCT	2 cut(s)	176, 477
AluI	AGCT	2 cut(s)	176, 477
Alw21I	GWGCWC	1 cut(s)	515
Alw26I	GTCTC	2 cut(s)	21, 210
AlwI	GGATC	1 cut(s)	392
AlwNI	CAGNNNCTG	1 cut(s)	360
Ama87I	CYCGRG	1 cut(s)	290
ApeKI	GCWGC	8 cut(s)	173, 360, 477, 498, 501, 537, 606, 630
Asp700I	GAANNNNTTC	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	264
AsuHPI	GGTGA	1 cut(s)	146
AvaI	CYCGRG	1 cut(s)	290
BaeI	ACNNNNGTAYC	2 cut(s)	731, 764
BanII	GRGCYC	1 cut(s)	40
BarI	GAAGNNNNNNTAC	2 cut(s)	178, 210
Bbv12I	GWGCWC	1 cut(s)	515
BbvI	GCAGC	8 cut(s)	185, 347, 464, 485, 488, 524, 593, 617
BccI	CCATC	1 cut(s)	87
BceAI	ACGGC	2 cut(s)	187, 353
BcgI	CGANNNNNNTGC	4 cut(s)	588, 622, 732, 766
BciT130I	CCWGG	1 cut(s)	277
BciVI	GTATCC	1 cut(s)	252
BcoDI	GTCTC	2 cut(s)	21, 210
BfaI	CTAG	1 cut(s)	524
BfmI	CTRYAG	1 cut(s)	547
BfuAI	ACCTGC	2 cut(s)	355, 420
BfuI	GTATCC	1 cut(s)	252
Bme1390I	CCNGG	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	277
BmrI	ACTGGG	1 cut(s)	156
BmsI	GCATC	2 cut(s)	276, 347
BmuI	ACTGGG	1 cut(s)	156
BoxI	GACNNNNGTC	1 cut(s)	549
BpuEI	CTTGAG	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	8 cut(s)	185, 347, 464, 485, 488, 524, 593, 617
Bsh1285I	CGRYCG	1 cut(s)	746
BsiEI	CGRYCG	1 cut(s)	746
BsiHKAI	GWGCWC	1 cut(s)	515
BsiHKCI	CYCGRG	1 cut(s)	290
BslFI	GGGAC	2 cut(s)	600, 669
BsmAI	GTCTC	2 cut(s)	21, 210
BsmBI	CGTCTC	2 cut(s)	21, 210
BsmFI	GGGAC	2 cut(s)	600, 669
BsmI	GAATGC	1 cut(s)	468
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	2 cut(s)	40, 515
Bsp143I	GATC	1 cut(s)	397
BspLI	GGNNCC	1 cut(s)	158
BspMAI	CTGCAG	1 cut(s)	551
BspMI	ACCTGC	2 cut(s)	355, 420
BspPI	GGATC	1 cut(s)	392
BsrBI	CCGCTC	1 cut(s)	621
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	1 cut(s)	397
Bst2UI	CCWGG	1 cut(s)	277
Bst4CI	ACNGT	3 cut(s)	8, 563, 747
BstAPI	GCANNNNNTGC	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	577
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	1 cut(s)	400
BstMAI	GTCTC	2 cut(s)	21, 210
BstMBI	GATC	1 cut(s)	397
BstMCI	CGRYCG	1 cut(s)	746
BstMWI	GCNNNNNNNGC	6 cut(s)	208, 435, 510, 519, 546, 627
BstNI	CCWGG	1 cut(s)	277
BstPAI	GACNNNNGTC	1 cut(s)	549
BstSCI	CCNGG	1 cut(s)	275
BstSFI	CTRYAG	1 cut(s)	547
BstV1I	GCAGC	8 cut(s)	185, 347, 464, 485, 488, 524, 593, 617
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BsuI	GTATCC	1 cut(s)	252
BtgZI	GCGATG	1 cut(s)	613
BveI	ACCTGC	2 cut(s)	355, 420
Cac8I	GCNNGC	1 cut(s)	577
CaiI	CAGNNNCTG	1 cut(s)	360
CfoI	GCGC	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	740
CviAII	CATG	6 cut(s)	435, 483, 570, 612, 645, 681
CviJI	RGCY	6 cut(s)	38, 176, 275, 340, 454, 477
CviKI_1	RGCY	6 cut(s)	38, 176, 275, 340, 454, 477
CviQI	GTAC	1 cut(s)	740
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
EciI	GGCGGA	1 cut(s)	509
Eco24I	GRGCYC	1 cut(s)	40
Eco88I	CYCGRG	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	275
EcoT38I	GRGCYC	1 cut(s)	40
Esp3I	CGTCTC	2 cut(s)	21, 210
FaeI	CATG	6 cut(s)	438, 486, 573, 615, 648, 684
FaqI	GGGAC	2 cut(s)	600, 669
FatI	CATG	6 cut(s)	434, 482, 569, 611, 644, 680
FauI	CCCGC	2 cut(s)	626, 678
FriOI	GRGCYC	1 cut(s)	40
FspBI	CTAG	1 cut(s)	524
GlaI	GCGC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	264
Hin1II	CATG	6 cut(s)	438, 486, 573, 615, 648, 684
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HinfI	GANTC	1 cut(s)	415
HphI	GGTGA	1 cut(s)	146
Hpy188I	TCNGA	3 cut(s)	35, 285, 735
Hpy188III	TCNNGA	6 cut(s)	245, 292, 311, 354, 445, 686
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	2 cut(s)	189, 730
HpyCH4III	ACNGT	3 cut(s)	8, 563, 747
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	9 cut(s)	4, 11, 363, 389, 549, 633, 663, 705, 774
HpyF10VI	GCNNNNNNNGC	6 cut(s)	208, 435, 510, 519, 546, 627
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	6 cut(s)	438, 486, 573, 615, 648, 684
HspAI	GCGC	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	397
LmnI	GCTCC	2 cut(s)	181, 626
Lsp1109I	GCAGC	8 cut(s)	185, 347, 464, 485, 488, 524, 593, 617
LweI	GCATC	2 cut(s)	276, 347
MaeI	CTAG	1 cut(s)	524
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	542, 557
MalI	GATC	1 cut(s)	399
MbiI	CCGCTC	1 cut(s)	621
MboI	GATC	1 cut(s)	397
MboII	GAAGA	1 cut(s)	102
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	2 cut(s)	40, 515
MluCI	AATT	3 cut(s)	43, 300, 655
MmeI	TCCRAC	1 cut(s)	648
MnlI	CCTC	6 cut(s)	105, 112, 288, 307, 310, 361
MroXI	GAANNNNTTC	1 cut(s)	339
MseI	TTAA	1 cut(s)	404
MspA1I	CMGCKG	2 cut(s)	100, 477
MspR9I	CCNGG	1 cut(s)	277
Mva1269I	GAATGC	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	277
MwoI	GCNNNNNNNGC	6 cut(s)	208, 435, 510, 519, 546, 627
NdeII	GATC	1 cut(s)	397
NlaIII	CATG	6 cut(s)	438, 486, 573, 615, 648, 684
NlaIV	GGNNCC	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	542
PaeR7I	CTCGAG	1 cut(s)	290
PctI	GAATGC	1 cut(s)	468
PdmI	GAANNNNTTC	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	415
PshAI	GACNNNNGTC	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	158
PstI	CTGCAG	1 cut(s)	551
PstNI	CAGNNNCTG	1 cut(s)	360
PsuI	RGATCY	1 cut(s)	397
PvuII	CAGCTG	1 cut(s)	477
RsaI	GTAC	1 cut(s)	741
RsaNI	GTAC	1 cut(s)	740
SaqAI	TTAA	1 cut(s)	404
Sau3AI	GATC	1 cut(s)	397
ScrFI	CCNGG	1 cut(s)	277
SduI	GDGCHC	2 cut(s)	40, 515
SfaNI	GCATC	2 cut(s)	276, 347
SfcI	CTRYAG	1 cut(s)	547
Sfr274I	CTCGAG	1 cut(s)	290
SlaI	CTCGAG	1 cut(s)	290
SmlI	CTYRAG	2 cut(s)	290, 311
SmoI	CTYRAG	2 cut(s)	290, 311
Sse9I	AATT	3 cut(s)	43, 300, 655
SspI	AATATT	1 cut(s)	640
SspMI	CTAG	1 cut(s)	524
StyD4I	CCNGG	1 cut(s)	275
TaaI	ACNGT	3 cut(s)	8, 563, 747
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	1 cut(s)	291
TasI	AATT	3 cut(s)	43, 300, 655
TauI	GCSGC	4 cut(s)	235, 238, 441, 651
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TseFI	GTSAC	1 cut(s)	542
TseI	GCWGC	8 cut(s)	173, 360, 477, 498, 501, 537, 606, 630
Tsp45I	GTSAC	1 cut(s)	542
TspDTI	ATGAA	4 cut(s)	53, 102, 633, 669
TspGWI	ACGGA	2 cut(s)	390, 543
XhoI	CTCGAG	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	339
XspI	CTAG	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.