Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010979

Physical Location & Seq

Genomic Coordinates Reverse (-)

6592362 .. 6595060

Gene Structure 2699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCGACCTTGGCGTTCGCGAGCGTAACATCTCCGCCGTTCTCGTCGTCGCGCCGGTCTCCGTCGACCCACGGAAGATTCCAAATCCCCTTCCTCCATAAAACTCCGAAATGGGGTCAGAGATCTCTGCTTCTTCCCATAACATGCTCGTCTACCGAACCAAATCAAAACGCCGACGACTCCGAACCCAAAACGGCGTCGTTGGCCCCGTCGTCTTCGAGTGACTTGACCTACAAACTCTACGCAGGGCTCGGAGGTGTTGGGTTTCTCGAGACGACTTACTTGACTTACCTCAAGCTCACAAATTCCAATGCGTTCTGCCCCACCGCCGGCGGCGGCGGCGGCGGCGGAGGAAGCTGCGGCGACATCCTCAGTAGCGATTACGCTGTCGTTTTTGGTGTTCCTCTTCCGCTGTTTGGAATGGTTGCTTATGGGTTAGTTGCTACTCTGGGTGTGCAGCTACTGACTGCAAAGAAGTTGCCTTTTGGAATTGATGAATCTAATGCTCGCTTAGTTTTGCTCGGGACTACAACTTCCATGGCAGCTGCTAGCGCTTGCTTTTTGTACATTCTTAGCACCAAATTTTCGGGAGCTTCTTGCTCGTATTGCTTGTTATCTGCTCTGCTCTCTTTCACCTTGTTTTTCATCGCCTTAAAGGATTTTGGGTTGGAAAAAGTACAGAAGGAAGTGGGTTTGCTGTTTTGTATAGCTAGCTTAGTGGTTGTGACTCTCAACAGGTCATATAGTGCTCTTCCACCTGTGCCCTCAAGCCCGTCTGAAATTGATCTTCCATATTTTTCAACTGAGATAACAACACCATCAAGCCCGTTTGCAATAGCTCTTGCAAAGCATCTGAGTGCTATTGGTGCTAAAATGTATGGGGCTTTCTGGTGTTCACATTGTGTCGAACAAAAGCAGATGTTTGGAAGTGAGGCAGCAAAACTGTTGAACTATGTTGAGTGCTTCCCTGGTGGATTTAGGAAGGGAACTATAATGCAAAAGGAATGCTTTGATGTCGGAATTGAAGGTTTTCCTACATGGGTGATTAACGGGCAGGTATTGAGTGGAGAAAAAGAGTTGATGGAGCTTGCACAGGAATCTGGGTTTGATTTAAAGGAATTTAATCAGACTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003955 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0016491 GO:0016651 GO:0016655 GO:0019684 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VKOR

Protein Analysis

379

Amino Acids

40.27

Weight (kDa)

6.12

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VKOR	PF07884	80 - 217	4e-26	Vitamin K epoxide reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35760 AT4G35760
fragaria_vesca	FvH4_1g10920 FvH4_1g10920
malus_domestica	MD02G1122300.v1.1 MD15G1236200.v1.1
prunus_persica	Prupe.7G176300_v2.0.a1
pyrus_communis	pycom02g09520 pycom15g21020
rosa_chinensis	RchiOBHm_Chr2g0098181
rosa_laevigata	RLG00000016769
rosa_multiflora	Rmu_sc0009178.1_g000009 Rmu_sc0023861.1_g000003
rosa_roxburghii	Rroxscaffold_2G00144220
rosa_rugosa	Rorug02G0070800
rosa_samantha	Rh2AG118100 Rh2BG121100 Rh2CG122700 Rh2DG122600
rosa_wichuraiana	Rw2G009240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1045
AccI	GTMKAC	2 cut(s)	65, 152
AccII	CGCG	2 cut(s)	20, 52
AcsI	RAATTY	3 cut(s)	304, 581, 1118
AcyI	GRCGYC	1 cut(s)	197
AdeI	CACNNNGTG	1 cut(s)	902
AfaI	GTAC	2 cut(s)	566, 678
AfeI	AGCGCT	1 cut(s)	553
AfiI	CCNNNNNNNGG	3 cut(s)	113, 329, 416
AgsI	TTSAA	3 cut(s)	801, 949, 1025
AjnI	CCWGG	1 cut(s)	967
AluBI	AGCT	9 cut(s)	298, 357, 460, 545, 593, 710, 714, 839, 1087
AluI	AGCT	9 cut(s)	298, 357, 460, 545, 593, 710, 714, 839, 1087
Alw21I	GWGCWC	1 cut(s)	751
Alw26I	GTCTC	2 cut(s)	63, 266
AlwNI	CAGNNNCTG	1 cut(s)	463
Ama87I	CYCGRG	2 cut(s)	269, 521
Aor51HI	AGCGCT	1 cut(s)	553
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	5 cut(s)	357, 457, 542, 545, 935
ApoI	RAATTY	3 cut(s)	304, 581, 1118
Asp700I	GAANNNNTTC	1 cut(s)	1029
AspLEI	GCGC	2 cut(s)	54, 554
AspS9I	GGNCC	1 cut(s)	205
AsuHPI	GGTGA	2 cut(s)	625, 1054
AsuNHI	GCTAGC	2 cut(s)	548, 710
AvaI	CYCGRG	2 cut(s)	269, 521
BaeGI	GKGCMC	1 cut(s)	765
BanII	GRGCYC	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	751
BbvI	GCAGC	5 cut(s)	344, 469, 532, 554, 947
BccI	CCATC	2 cut(s)	826, 1075
BceAI	ACGGC	2 cut(s)	22, 210
BciT130I	CCWGG	1 cut(s)	969
BcoDI	GTCTC	2 cut(s)	63, 266
BfaI	CTAG	3 cut(s)	549, 711, 1135
BfoI	RGCGCY	1 cut(s)	555
BfuAI	ACCTGC	1 cut(s)	1045
BglII	AGATCT	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	969
BmeT110I	CYCGRG	2 cut(s)	269, 521
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	969
BmsI	GCATC	1 cut(s)	859
BmtI	GCTAGC	2 cut(s)	552, 714
BpiI	GAAGAC	1 cut(s)	207
BpuEI	CTTGAG	2 cut(s)	278, 751
BsaHI	GRCGYC	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	63
BsaJI	CCNNGG	4 cut(s)	9, 70, 537, 967
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 329, 416
Bse118I	RCCGGY	2 cut(s)	54, 329
BseBI	CCWGG	1 cut(s)	969
BseDI	CCNNGG	4 cut(s)	9, 70, 537, 967
BseGI	GGATG	1 cut(s)	366
BseLI	CCNNNNNNNGG	3 cut(s)	113, 329, 416
BseMII	CTCAG	3 cut(s)	385, 795, 845
BseSI	GKGCMC	1 cut(s)	765
BseXI	GCAGC	5 cut(s)	344, 469, 532, 554, 947
BsgI	GTGCAG	1 cut(s)	476
Bsh1236I	CGCG	2 cut(s)	20, 52
BshFI	GGCC	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	751
BsiHKCI	CYCGRG	2 cut(s)	269, 521
BsiSI	CCGG	2 cut(s)	55, 330
BslFI	GGGAC	1 cut(s)	538
BslI	CCNNNNNNNGG	3 cut(s)	113, 329, 416
BsmAI	GTCTC	2 cut(s)	63, 266
BsmBI	CGTCTC	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	538
BsmI	GAATGC	1 cut(s)	1010
BsnI	GGCC	1 cut(s)	206
Bso31I	GGTCTC	1 cut(s)	63
BsoBI	CYCGRG	2 cut(s)	269, 521
Bsp1286I	GDGCHC	3 cut(s)	252, 751, 765
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	2 cut(s)	122, 784
Bsp19I	CCATGG	1 cut(s)	537
Bsp68I	TCGCGA	1 cut(s)	20
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	3 cut(s)	384, 796, 846
BspFNI	CGCG	2 cut(s)	20, 52
BspLI	GGNNCC	1 cut(s)	207
BspMI	ACCTGC	1 cut(s)	1045
BspOI	GCTAGC	2 cut(s)	552, 714
BspQI	GCTCTTC	1 cut(s)	756
BspTNI	GGTCTC	1 cut(s)	63
BsrFI	RCCGGY	2 cut(s)	54, 329
BsrGI	TGTACA	1 cut(s)	564
BssAI	RCCGGY	2 cut(s)	54, 329
BssECI	CCNNGG	4 cut(s)	9, 70, 537, 967
BssMI	GATC	2 cut(s)	122, 784
BssNI	GRCGYC	1 cut(s)	197
BssT1I	CCWWGG	2 cut(s)	9, 537
Bst2UI	CCWGG	1 cut(s)	969
Bst4CI	ACNGT	1 cut(s)	945
Bst6I	CTCTTC	2 cut(s)	411, 756
BstACI	GRCGYC	1 cut(s)	197
BstAUI	TGTACA	1 cut(s)	564
BstC8I	GCNNGC	7 cut(s)	22, 331, 508, 550, 556, 712, 1089
BstDEI	CTNAG	6 cut(s)	371, 511, 572, 715, 804, 854
BstDSI	CCRYGG	2 cut(s)	70, 537
BstF5I	GGATG	1 cut(s)	366
BstFNI	CGCG	2 cut(s)	20, 52
BstH2I	RGCGCY	1 cut(s)	555
BstHHI	GCGC	2 cut(s)	54, 554
BstKTI	GATC	2 cut(s)	125, 787
BstMAI	GTCTC	2 cut(s)	63, 266
BstMBI	GATC	2 cut(s)	122, 784
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 203, 339, 342, 345, 354, 551, 606, 866
BstNI	CCWGG	1 cut(s)	969
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	967
BstSLI	GKGCMC	1 cut(s)	765
BstUI	CGCG	2 cut(s)	20, 52
BstV1I	GCAGC	5 cut(s)	344, 469, 532, 554, 947
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	206
BtgI	CCRYGG	2 cut(s)	70, 537
BtgZI	GCGATG	1 cut(s)	631
BtsCI	GGATG	1 cut(s)	366
BtuMI	TCGCGA	1 cut(s)	20
BveI	ACCTGC	1 cut(s)	1045
Cac8I	GCNNGC	7 cut(s)	22, 331, 508, 550, 556, 712, 1089
CaiI	CAGNNNCTG	1 cut(s)	463
CfoI	GCGC	2 cut(s)	54, 554
Cfr10I	RCCGGY	2 cut(s)	54, 329
Cfr13I	GGNCC	1 cut(s)	205
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	2 cut(s)	565, 677
CviAII	CATG	3 cut(s)	144, 538, 1038
CviQI	GTAC	2 cut(s)	565, 677
DdeI	CTNAG	6 cut(s)	371, 511, 572, 715, 804, 854
DpnI	GATC	2 cut(s)	124, 786
DpnII	GATC	2 cut(s)	122, 784
DraI	TTTAAA	1 cut(s)	1113
DraIII	CACNNNGTG	1 cut(s)	902
Eam1104I	CTCTTC	2 cut(s)	411, 756
EarI	CTCTTC	2 cut(s)	411, 756
EciI	GGCGGA	2 cut(s)	24, 363
Eco130I	CCWWGG	2 cut(s)	9, 537
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	63
Eco47III	AGCGCT	1 cut(s)	553
Eco88I	CYCGRG	2 cut(s)	269, 521
EcoRII	CCWGG	1 cut(s)	967
EcoT14I	CCWWGG	2 cut(s)	9, 537
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	2 cut(s)	9, 537
Esp3I	CGTCTC	1 cut(s)	266
FaeI	CATG	3 cut(s)	147, 541, 1041
FalI	AAGNNNNNCTT	2 cut(s)	992, 1024
FaqI	GGGAC	1 cut(s)	538
FatI	CATG	3 cut(s)	143, 537, 1037
FblI	GTMKAC	2 cut(s)	65, 152
FokI	GGATG	1 cut(s)	353
FriOI	GRGCYC	1 cut(s)	252
FspBI	CTAG	3 cut(s)	549, 711, 1135
GlaI	GCGC	2 cut(s)	53, 553
HaeII	RGCGCY	1 cut(s)	555
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	2 cut(s)	55, 330
HgaI	GACGC	1 cut(s)	186
HhaI	GCGC	2 cut(s)	54, 554
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	3 cut(s)	147, 541, 1041
Hin6I	GCGC	2 cut(s)	52, 552
HinP1I	GCGC	2 cut(s)	52, 552
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	6 cut(s)	78, 179, 497, 727, 1097, 1129
HpaII	CCGG	2 cut(s)	55, 330
HphI	GGTGA	2 cut(s)	625, 1054
Hpy166II	GTNNAC	3 cut(s)	66, 153, 896
Hpy188I	TCNGA	8 cut(s)	108, 120, 184, 254, 778, 855, 1019, 1128
Hpy188III	TCNNGA	5 cut(s)	19, 269, 271, 523, 588
Hpy8I	GTNNAC	3 cut(s)	66, 153, 896
Hpy99I	CGWCG	6 cut(s)	49, 52, 67, 179, 202, 214
HpyAV	CCTTC	4 cut(s)	100, 676, 976, 1019
HpyCH4III	ACNGT	1 cut(s)	945
HpyCH4V	TGCA	6 cut(s)	457, 470, 833, 845, 997, 1091
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 203, 339, 342, 345, 354, 551, 606, 866
HpyF3I	CTNAG	6 cut(s)	371, 511, 572, 715, 804, 854
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	3 cut(s)	147, 541, 1041
HspAI	GCGC	2 cut(s)	52, 552
KroI	GCCGGC	1 cut(s)	329
KroNI	GCCGGC	1 cut(s)	331
Kzo9I	GATC	2 cut(s)	122, 784
LguI	GCTCTTC	1 cut(s)	756
LmnI	GCTCC	2 cut(s)	590, 1084
Lsp1109I	GCAGC	5 cut(s)	344, 469, 532, 554, 947
LweI	GCATC	1 cut(s)	859
MaeI	CTAG	3 cut(s)	549, 711, 1135
MaeIII	GTNAC	3 cut(s)	25, 221, 724
MalI	GATC	2 cut(s)	124, 786
MboI	GATC	2 cut(s)	122, 784
MboII	GAAGA	6 cut(s)	87, 125, 207, 398, 743, 779
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	3 cut(s)	252, 751, 765
MluCI	AATT	6 cut(s)	304, 489, 581, 780, 1020, 1118
MlyI	GAGTC	3 cut(s)	173, 721, 1123
MmeI	TCCRAC	2 cut(s)	648, 997
MnlI	CCTC	8 cut(s)	104, 248, 302, 344, 380, 414, 775, 925
MreI	CGCCGGCG	1 cut(s)	329
MroNI	GCCGGC	1 cut(s)	329
MroXI	GAANNNNTTC	1 cut(s)	1029
MseI	TTAA	4 cut(s)	653, 1047, 1112, 1122
MslI	CAYNNNNRTG	1 cut(s)	855
MspA1I	CMGCKG	2 cut(s)	412, 545
MspI	CCGG	2 cut(s)	55, 330
MspR9I	CCNGG	1 cut(s)	969
Mva1269I	GAATGC	1 cut(s)	1010
MvaI	CCWGG	1 cut(s)	969
MvnI	CGCG	2 cut(s)	20, 52
MwoI	GCNNNNNNNGC	9 cut(s)	11, 203, 339, 342, 345, 354, 551, 606, 866
NaeI	GCCGGC	1 cut(s)	331
NcoI	CCATGG	1 cut(s)	537
NdeII	GATC	2 cut(s)	122, 784
NgoMIV	GCCGGC	1 cut(s)	329
NheI	GCTAGC	2 cut(s)	548, 710
NlaIII	CATG	3 cut(s)	147, 541, 1041
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	2 cut(s)	221, 724
NruI	TCGCGA	1 cut(s)	20
NspI	RCATGY	1 cut(s)	147
PaeR7I	CTCGAG	1 cut(s)	269
PciSI	GCTCTTC	1 cut(s)	756
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PctI	GAATGC	1 cut(s)	1010
PdiI	GCCGGC	1 cut(s)	331
PdmI	GAANNNNTTC	1 cut(s)	1029
PfeI	GAWTC	3 cut(s)	78, 497, 1097
PleI	GAGTC	3 cut(s)	173, 721, 1123
PpsI	GAGTC	3 cut(s)	173, 721, 1123
Psp6I	CCWGG	1 cut(s)	967
PspGI	CCWGG	1 cut(s)	967
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	545
RruI	TCGCGA	1 cut(s)	20
RsaI	GTAC	2 cut(s)	566, 678
RsaNI	GTAC	2 cut(s)	565, 677
RseI	CAYNNNNRTG	1 cut(s)	855
SalI	GTCGAC	1 cut(s)	64
SapI	GCTCTTC	1 cut(s)	756
SaqAI	TTAA	4 cut(s)	653, 1047, 1112, 1122
Sau3AI	GATC	2 cut(s)	122, 784
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	3 cut(s)	173, 721, 1123
ScrFI	CCNGG	1 cut(s)	969
SduI	GDGCHC	3 cut(s)	252, 751, 765
SfaNI	GCATC	1 cut(s)	859
Sfr274I	CTCGAG	1 cut(s)	269
SgrAI	CRCCGGYG	1 cut(s)	329
SlaI	CTCGAG	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	855
SmlI	CTYRAG	3 cut(s)	269, 293, 766
SmoI	CTYRAG	3 cut(s)	269, 293, 766
Sse9I	AATT	6 cut(s)	304, 489, 581, 780, 1020, 1118
SspMI	CTAG	3 cut(s)	549, 711, 1135
StyD4I	CCNGG	1 cut(s)	967
StyI	CCWWGG	2 cut(s)	9, 537
TaaI	ACNGT	1 cut(s)	945
TaqI	TCGA	4 cut(s)	65, 218, 270, 906
TasI	AATT	6 cut(s)	304, 489, 581, 780, 1020, 1118
TatI	WGTACW	2 cut(s)	564, 676
TauI	GCSGC	6 cut(s)	336, 339, 342, 345, 348, 363
TfiI	GAWTC	3 cut(s)	78, 497, 1097
Tru1I	TTAA	4 cut(s)	653, 1047, 1112, 1122
Tru9I	TTAA	4 cut(s)	653, 1047, 1112, 1122
TseFI	GTSAC	2 cut(s)	221, 724
TseI	GCWGC	5 cut(s)	357, 457, 542, 545, 935
Tsp45I	GTSAC	2 cut(s)	221, 724
TspDTI	ATGAA	2 cut(s)	510, 634
TspGWI	ACGGA	2 cut(s)	51, 87
XapI	RAATTY	3 cut(s)	304, 581, 1118
XceI	RCATGY	1 cut(s)	147
XhoI	CTCGAG	1 cut(s)	269
XmiI	GTMKAC	2 cut(s)	65, 152
XmnI	GAANNNNTTC	1 cut(s)	1029
XspI	CTAG	3 cut(s)	549, 711, 1135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.