pycom02g23180

SAC3 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
21318754 .. 21322059
3306 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g23180.4

Sequence Viewer

Length: 1191 bp
ATGGAGAGGCGAGGGCGTGGGCGTGGTCGAAATGTTTCTTCTTCCCAATCCACGCGTGGCCGCTCGAACAGGTTCGTTTCGAATTCGACCTCCGCCGCAGCCGCTAAATCCTCGAGCAGAGGCGCAACTGGTACTGAGAAAGCACAGAACGACGCCGTAGATAACCATTCCGACGTTCCCGCCATAGTGGGCACTTGCCCCTTGATGTGCCCGGAAGGAGAGAGGGCGCAGCGTGAGCGGCTTCGTGATTTAGCAGTGTTTGAGAGGCTCCATGGAAATCCCAGACAATCATCTCCGGACCTCGCTGTTAAAAAATTTTTCAGAACTACGTCTAACAAACAAGTTGAAGCATCGGAGGTTCGGCCGCTCCCTGTGTTGGAAGACACCTTAAATTACCTTTTAAACTTGTTTGATTCTAGAGAATATCCTTTTGAAGTGGTTCATGACTTCCTCTTTGATCGAACAAGGTCGATAAGACAGGATCTTAGCATGCAGAATGTTGTCAACGATAAAGTCATCCACATGTATGAGAAAATGGTCAAGTTTCATATCATATCCCTTCGCAAGCTTCGAGGTTGTCGCAGTCAAAATACTTCTTCAACCCATTACCTCAACATGGAACAGCTTGCAAAGACCTTGACATCTCTATTTGATCTGTATGAAGCACATAGGCATTCCAATTCTACATACGAAAACGAAGCTGAGTTTTGTTCGTTTTATGTGCTGCTTCATCTTGGTCCTAACAGCCAACCGATGGGAGAGTCCCTTTCATGGTGGTTTTCTCACTTGCCTTGTTTGTTAATCAAATCGAAGGAAATGTGCTTTTCCCGAAAGATTTTACGATTTTTCCGGATGGGCAACTATAAGCGTTTCTTAAGCACTATAGCAGCTGAGGCATCTTATCTTCAATACTGCATTCTCGAGCCTTATATCAACCAGGTTCGAGTGCTCGCTGTCTCGTGTATAAATAATGGTGGATACAAGCTTCATCCGTATCCGCTGGCACACTTGTCTAAGCTCTTGATGATGACGGAATCAGATTTGGAGTCTCTTTGTAGAGCTTGTGGTCTTGATATTTGCACAGATGAAGAAGGATATAGTTTGTTGCCGACTAAGCAAACCACCTTTTGTCATCCGAAGGATGGATTTCAAAGCTACAGAGTTTTGGGTCTGGAAGAATTCGAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

397

Amino Acids

45.38

Weight (kDa)

8.74

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 754
AccBSI CCGCTC 3 cut(s) 63, 238, 367
AccII CGCG 1 cut(s) 55
AccIII TCCGGA 2 cut(s) 295, 849
AciI CCGC 8 cut(s) 61, 93, 96, 102, 180, 238, 365, 998
AclWI GGATC 1 cut(s) 489
AcoI YGGCCR 2 cut(s) 58, 362
AcsI RAATTY 3 cut(s) 82, 314, 1178
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 1 cut(s) 133
AfiI CCNNNNNNNGG 5 cut(s) 376, 616, 754, 771, 1142
AflII CTTAAG 1 cut(s) 874
AflIII ACRYGT 2 cut(s) 53, 522
AgsI TTSAA 5 cut(s) 347, 434, 600, 908, 1151
AjnI CCWGG 1 cut(s) 936
AluBI AGCT 8 cut(s) 568, 625, 701, 890, 985, 1018, 1061, 1155
AluI AGCT 8 cut(s) 568, 625, 701, 890, 985, 1018, 1061, 1155
Alw21I GWGCWC 1 cut(s) 951
Alw26I GTCTC 2 cut(s) 961, 1053
AlwI GGATC 1 cut(s) 489
Ama87I CYCGRG 2 cut(s) 112, 920
Aor13HI TCCGGA 2 cut(s) 295, 849
AoxI GGCC 2 cut(s) 58, 362
ApeKI GCWGC 4 cut(s) 98, 229, 724, 887
ApoI RAATTY 3 cut(s) 82, 314, 1178
ArsI GACNNNNNNTTYG 2 cut(s) 437, 469
Asp700I GAANNNNTTC 3 cut(s) 34, 71, 438
AspLEI GCGC 2 cut(s) 125, 229
AspS9I GGNCC 2 cut(s) 298, 737
AsuC2I CCSGG 1 cut(s) 212
AsuII TTCGAA 1 cut(s) 80
AvaI CYCGRG 2 cut(s) 112, 920
AvaII GGWCC 2 cut(s) 298, 737
BaeGI GKGCMC 2 cut(s) 194, 212
BauI CACGAG 1 cut(s) 958
BbsI GAAGAC 1 cut(s) 387
Bbv12I GWGCWC 1 cut(s) 951
BbvCI CCTCAGC 1 cut(s) 891
BbvI GCAGC 4 cut(s) 110, 241, 711, 899
BccI CCATC 3 cut(s) 748, 847, 1136
BceAI ACGGC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 938
BciVI GTATCC 2 cut(s) 971, 1005
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 2 cut(s) 961, 1053
BfaI CTAG 1 cut(s) 417
BfmI CTRYAG 2 cut(s) 882, 1156
BfrI CTTAAG 1 cut(s) 874
BfuI GTATCC 2 cut(s) 971, 1005
BisI GCNGC 9 cut(s) 61, 96, 99, 102, 230, 239, 365, 725, 888
BlsI GCNGC 9 cut(s) 62, 97, 100, 103, 231, 240, 366, 726, 889
Bme1390I CCNGG 2 cut(s) 212, 938
Bme18I GGWCC 2 cut(s) 298, 737
BmeT110I CYCGRG 2 cut(s) 112, 920
BmgT120I GGNCC 2 cut(s) 298, 737
BmiI GGNNCC 1 cut(s) 269
BmrFI CCNGG 2 cut(s) 212, 938
BmsI GCATC 2 cut(s) 359, 905
BpiI GAAGAC 1 cut(s) 387
Bpu10I CCTNAGC 1 cut(s) 891
Bpu14I TTCGAA 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 212
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 271
BsaWI WCCGGW 2 cut(s) 295, 849
Bsc4I CCNNNNNNNGG 5 cut(s) 376, 616, 754, 771, 1142
Bse1I ACTGG 1 cut(s) 133
BseAI TCCGGA 2 cut(s) 295, 849
BseBI CCWGG 1 cut(s) 938
BseDI CCNNGG 1 cut(s) 271
BseGI GGATG 5 cut(s) 516, 858, 988, 1132, 1147
BseLI CCNNNNNNNGG 5 cut(s) 376, 616, 754, 771, 1142
BseMII CTCAG 3 cut(s) 126, 693, 882
BseNI ACTGG 1 cut(s) 133
BseSI GKGCMC 2 cut(s) 194, 212
BseX3I CGGCCG 1 cut(s) 362
BseXI GCAGC 4 cut(s) 110, 241, 711, 899
Bsh1236I CGCG 1 cut(s) 55
Bsh1285I CGRYCG 1 cut(s) 365
BshFI GGCC 2 cut(s) 60, 364
BsiEI CGRYCG 1 cut(s) 365
BsiHKAI GWGCWC 1 cut(s) 951
BsiHKCI CYCGRG 2 cut(s) 112, 920
BsiSI CCGG 3 cut(s) 212, 296, 850
BslFI GGGAC 1 cut(s) 748
BslI CCNNNNNNNGG 5 cut(s) 376, 616, 754, 771, 1142
BsmAI GTCTC 2 cut(s) 961, 1053
BsmFI GGGAC 1 cut(s) 748
BsmI GAATGC 2 cut(s) 673, 915
BsnI GGCC 2 cut(s) 60, 364
BsoBI CYCGRG 2 cut(s) 112, 920
Bsp119I TTCGAA 1 cut(s) 80
Bsp1286I GDGCHC 3 cut(s) 194, 212, 951
Bsp13I TCCGGA 2 cut(s) 295, 849
Bsp143I GATC 3 cut(s) 457, 481, 652
Bsp19I CCATGG 1 cut(s) 271
BspACI CCGC 8 cut(s) 61, 93, 96, 102, 180, 238, 365, 998
BspANI GGCC 2 cut(s) 60, 364
BspCNI CTCAG 3 cut(s) 127, 694, 883
BspEI TCCGGA 2 cut(s) 295, 849
BspFNI CGCG 1 cut(s) 55
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 269
BspPI GGATC 1 cut(s) 489
BspT104I TTCGAA 1 cut(s) 80
BspTI CTTAAG 1 cut(s) 874
BsrBI CCGCTC 3 cut(s) 63, 238, 367
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 271
BssMI GATC 3 cut(s) 457, 481, 652
BssNI GRCGYC 1 cut(s) 153
BssSI CACGAG 1 cut(s) 958
BssT1I CCWWGG 1 cut(s) 271
Bst2BI CACGAG 1 cut(s) 958
Bst2UI CCWGG 1 cut(s) 938
BstACI GRCGYC 1 cut(s) 153
BstAFI CTTAAG 1 cut(s) 874
BstBI TTCGAA 1 cut(s) 80
BstC8I GCNNGC 5 cut(s) 491, 566, 627, 951, 1002
BstDEI CTNAG 6 cut(s) 135, 485, 702, 891, 1014, 1113
BstDSI CCRYGG 1 cut(s) 271
BstF5I GGATG 5 cut(s) 516, 858, 988, 1132, 1147
BstFNI CGCG 1 cut(s) 55
BstHHI GCGC 2 cut(s) 125, 229
BstKTI GATC 3 cut(s) 460, 484, 655
BstMAI GTCTC 2 cut(s) 961, 1053
BstMBI GATC 3 cut(s) 457, 481, 652
BstMCI CGRYCG 1 cut(s) 365
BstMWI GCNNNNNNNGC 5 cut(s) 101, 235, 238, 893, 1114
BstNI CCWGG 1 cut(s) 938
BstNSI RCATGY 2 cut(s) 493, 526
BstSCI CCNGG 2 cut(s) 210, 936
BstSFI CTRYAG 2 cut(s) 882, 1156
BstSLI GKGCMC 2 cut(s) 194, 212
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 4 cut(s) 110, 241, 711, 899
BstV2I GAAGAC 1 cut(s) 387
BstX2I RGATCY 1 cut(s) 481
BstYI RGATCY 1 cut(s) 481
BstZI CGGCCG 1 cut(s) 362
BsuI GTATCC 2 cut(s) 971, 1005
BsuRI GGCC 2 cut(s) 60, 364
BtgI CCRYGG 1 cut(s) 271
BtsCI GGATG 5 cut(s) 516, 858, 988, 1132, 1147
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 5 cut(s) 491, 566, 627, 951, 1002
CciI TCATGA 1 cut(s) 442
CfoI GCGC 2 cut(s) 125, 229
Cfr13I GGNCC 2 cut(s) 298, 737
CseI GACGC 1 cut(s) 161
CsiI ACCWGGT 1 cut(s) 936
Csp6I GTAC 1 cut(s) 132
CviAII CATG 6 cut(s) 272, 443, 490, 523, 616, 771
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 6 cut(s) 135, 485, 702, 891, 1014, 1113
DpnI GATC 3 cut(s) 459, 483, 654
DpnII GATC 3 cut(s) 457, 481, 652
DraI TTTAAA 1 cut(s) 402
EaeI YGGCCR 2 cut(s) 58, 362
EagI CGGCCG 1 cut(s) 362
EciI GGCGGA 1 cut(s) 82
EclXI CGGCCG 1 cut(s) 362
Eco130I CCWWGG 1 cut(s) 271
Eco47I GGWCC 2 cut(s) 298, 737
Eco52I CGGCCG 1 cut(s) 362
Eco88I CYCGRG 2 cut(s) 112, 920
EcoRI GAATTC 2 cut(s) 82, 1178
EcoRII CCWGG 1 cut(s) 936
EcoT14I CCWWGG 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 271
FaeI CATG 6 cut(s) 275, 446, 493, 526, 619, 774
FalI AAGNNNNNCTT 2 cut(s) 857, 889
FaqI GGGAC 1 cut(s) 748
FatI CATG 6 cut(s) 271, 442, 489, 522, 615, 770
FauI CCCGC 1 cut(s) 187
Fnu4HI GCNGC 9 cut(s) 61, 96, 99, 102, 230, 239, 365, 725, 888
FokI GGATG 5 cut(s) 503, 865, 975, 1119, 1154
Fsp4HI GCNGC 9 cut(s) 61, 96, 99, 102, 230, 239, 365, 725, 888
FspBI CTAG 1 cut(s) 417
GlaI GCGC 2 cut(s) 124, 228
GluI GCNGC 9 cut(s) 61, 96, 99, 102, 230, 239, 365, 725, 888
HaeIII GGCC 2 cut(s) 60, 364
HapII CCGG 3 cut(s) 212, 296, 850
HgaI GACGC 1 cut(s) 161
HhaI GCGC 2 cut(s) 125, 229
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 6 cut(s) 275, 446, 493, 526, 619, 774
Hin6I GCGC 2 cut(s) 123, 227
HinP1I GCGC 2 cut(s) 123, 227
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HindIII AAGCTT 2 cut(s) 566, 983
HinfI GANTC 4 cut(s) 413, 761, 1034, 1046
HpaII CCGG 3 cut(s) 212, 296, 850
Hpy166II GTNNAC 1 cut(s) 505
Hpy188I TCNGA 5 cut(s) 172, 323, 355, 1039, 1137
Hpy8I GTNNAC 1 cut(s) 505
Hpy99I CGWCG 2 cut(s) 155, 176
HpyAV CCTTC 5 cut(s) 209, 569, 805, 1085, 1132
HpyCH4IV ACGT 2 cut(s) 174, 329
HpyCH4V TGCA 4 cut(s) 493, 629, 915, 1080
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 235, 238, 893, 1114
HpyF3I CTNAG 6 cut(s) 135, 485, 702, 891, 1014, 1113
HpySE526I ACGT 2 cut(s) 174, 329
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 6 cut(s) 275, 446, 493, 526, 619, 774
HspAI GCGC 2 cut(s) 123, 227
Kpn2I TCCGGA 2 cut(s) 295, 849
Kzo9I GATC 3 cut(s) 457, 481, 652
LmnI GCTCC 2 cut(s) 273, 372
Lsp1109I GCAGC 4 cut(s) 110, 241, 711, 899
LweI GCATC 2 cut(s) 359, 905
MabI ACCWGGT 1 cut(s) 936
MaeI CTAG 1 cut(s) 417
MaeII ACGT 2 cut(s) 174, 329
MalI GATC 3 cut(s) 459, 483, 654
MbiI CCGCTC 3 cut(s) 63, 238, 367
MboI GATC 3 cut(s) 457, 481, 652
MboII GAAGA 7 cut(s) 30, 33, 392, 588, 896, 1100, 1187
MflI RGATCY 1 cut(s) 481
MhlI GDGCHC 3 cut(s) 194, 212, 951
MluCI AATT 5 cut(s) 82, 314, 391, 679, 1178
MluI ACGCGT 1 cut(s) 53
MlyI GAGTC 2 cut(s) 770, 1055
MmeI TCCRAC 2 cut(s) 195, 357
MroI TCCGGA 2 cut(s) 295, 849
MroXI GAANNNNTTC 3 cut(s) 34, 71, 438
MseI TTAA 5 cut(s) 309, 389, 401, 800, 875
MslI CAYNNNNRTG 2 cut(s) 521, 525
MspA1I CMGCKG 2 cut(s) 890, 1000
MspCI CTTAAG 1 cut(s) 874
MspI CCGG 3 cut(s) 212, 296, 850
MspR9I CCNGG 2 cut(s) 212, 938
Mva1269I GAATGC 2 cut(s) 673, 915
MvaI CCWGG 1 cut(s) 938
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 5 cut(s) 101, 235, 238, 893, 1114
NciI CCSGG 1 cut(s) 212
NcoI CCATGG 1 cut(s) 271
NdeII GATC 3 cut(s) 457, 481, 652
NlaIII CATG 6 cut(s) 275, 446, 493, 526, 619, 774
NlaIV GGNNCC 1 cut(s) 269
NspI RCATGY 2 cut(s) 493, 526
NspV TTCGAA 1 cut(s) 80
PaeI GCATGC 1 cut(s) 493
PaeR7I CTCGAG 2 cut(s) 112, 920
PagI TCATGA 1 cut(s) 442
PciI ACATGT 1 cut(s) 522
PcsI WCGNNNNNNNCGW 1 cut(s) 568
PctI GAATGC 2 cut(s) 673, 915
PdmI GAANNNNTTC 3 cut(s) 34, 71, 438
PfeI GAWTC 2 cut(s) 413, 1034
PflMI CCANNNNNTGG 1 cut(s) 754
PkrI GCNGC 9 cut(s) 62, 97, 100, 103, 231, 240, 366, 726, 889
PleI GAGTC 2 cut(s) 769, 1054
PpsI GAGTC 2 cut(s) 769, 1054
PscI ACATGT 1 cut(s) 522
Psp6I CCWGG 1 cut(s) 936
PspGI CCWGG 1 cut(s) 936
PspN4I GGNNCC 1 cut(s) 269
PspPI GGNCC 2 cut(s) 298, 737
PspXI VCTCGAGB 1 cut(s) 112
PsuI RGATCY 1 cut(s) 481
PvuII CAGCTG 1 cut(s) 890
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
RseI CAYNNNNRTG 2 cut(s) 521, 525
SaqAI TTAA 5 cut(s) 309, 389, 401, 800, 875
SatI GCNGC 9 cut(s) 61, 96, 99, 102, 230, 239, 365, 725, 888
Sau3AI GATC 3 cut(s) 457, 481, 652
Sau96I GGNCC 2 cut(s) 298, 737
SchI GAGTC 2 cut(s) 770, 1055
ScrFI CCNGG 2 cut(s) 212, 938
SduI GDGCHC 3 cut(s) 194, 212, 951
SexAI ACCWGGT 1 cut(s) 936
SfaNI GCATC 2 cut(s) 359, 905
SfcI CTRYAG 2 cut(s) 882, 1156
Sfr274I CTCGAG 2 cut(s) 112, 920
SfuI TTCGAA 1 cut(s) 80
SinI GGWCC 2 cut(s) 298, 737
SlaI CTCGAG 2 cut(s) 112, 920
SmiMI CAYNNNNRTG 2 cut(s) 521, 525
SmlI CTYRAG 3 cut(s) 112, 874, 920
SmoI CTYRAG 3 cut(s) 112, 874, 920
SphI GCATGC 1 cut(s) 493
Sse9I AATT 5 cut(s) 82, 314, 391, 679, 1178
SsiI CCGC 8 cut(s) 61, 93, 96, 102, 180, 238, 365, 998
SspMI CTAG 1 cut(s) 417
StyD4I CCNGG 2 cut(s) 210, 936
StyI CCWWGG 1 cut(s) 271
TaiI ACGT 2 cut(s) 177, 332
TasI AATT 5 cut(s) 82, 314, 391, 679, 1178
TauI GCSGC 5 cut(s) 63, 98, 104, 241, 367
TfiI GAWTC 2 cut(s) 413, 1034
Tru1I TTAA 5 cut(s) 309, 389, 401, 800, 875
Tru9I TTAA 5 cut(s) 309, 389, 401, 800, 875
TscAI CASTG 1 cut(s) 261
TseI GCWGC 4 cut(s) 98, 229, 724, 887
TspDTI ATGAA 7 cut(s) 431, 536, 675, 719, 759, 977, 1101
TspGWI ACGGA 2 cut(s) 981, 1046
TspRI CASTG 1 cut(s) 261
Van91I CCANNNNNTGG 1 cut(s) 754
Vha464I CTTAAG 1 cut(s) 874
VpaK11BI GGWCC 2 cut(s) 298, 737
XapI RAATTY 3 cut(s) 82, 314, 1178
XbaI TCTAGA 1 cut(s) 416
XceI RCATGY 2 cut(s) 493, 526
XcmI CCANNNNNNNNNTGG 1 cut(s) 53
XhoI CTCGAG 2 cut(s) 112, 920
XmnI GAANNNNTTC 3 cut(s) 34, 71, 438
XspI CTAG 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.