Rh1BG078800

SAC3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003610
Physical Location & Seq
Reverse (-)
12284524 .. 12293812
9289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG078800.1

Sequence Viewer

Length: 903 bp
ATGGACACCGGACAATCTGGAAAGTGGAAACTTGATAAAAAAGACACCAAAGGTGAGGTAGCAAAGGGAGGCCTCCCTTTATTAATAGAGAAAGAGATCAAATCGAATTTCAAAGACTCTCGACTGACTCTTAAGAGTGAAGGCATGGAGAGAAGAGGCCGTCGAAACCGTTCTTCTTCTTCTTCTCGGGGTTCAAGATCCTGGAGCAGAGGTGGAACTAGTTCCGCCGAGAAAGTGGAAAACGTCGCCGTTTCCGATGTTCCCGCCATAGTGGGTACTTGCACTTTGATGTGCCCAGAAGCAGAAAGGGCACAGCGGGAGCGCCTTCGCGATTTAGCTACCTTTGAGAGGCTAAATGGAAATCCAGCTCGCTCATCGCCATCCATTGCAGTTAAAAAGTTTTTCAGAACTATGTCCACCAAACAAGTTCAAGCATCAGATGTTCGGCCGCTCCCTGTTTTGGAGGATACTTTAAATTACCTCTTAGAGTTGTTTGATTCTGAAGACTATCCTTTTGAAGTGATTCACGACTTCCTCTTTGATCGAACAAGGTCCATAAGGCAAGATCTTAGCATGCAGAATATTGGTGGCGAGAAAGCAATTCACATGTATCAGAAAATGGTTCAATTTCATATCATCTCTCTTCATAAGCTTCGAGGTTGCAGCAGTCAAAATACTTCTCCAATGCATCACCTCAACATGGAGCAGCTTGCAAAGACCTTGACATCTCTATTTAATCTGTATGGCGCAAATCGTCATTCCAATTCTACTAATGAAAATGAGGCTGAGTTTTGTTCTTTTTATGTGCTACTTCATCTTGGTTCTCATAGCCAACCCCTGGTTGATCTCTATTCATCTTTGTTTATTTATTTTCTTTCAGTTCTTATAGTTCTTGGTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAC3_GANP

Protein Analysis

300

Amino Acids

33.93

Weight (kDa)

9.1

Isoelectric Point (pI)

53.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAC3_GANP PF03399 97 - 276 2.8e-57 SAC3/GANP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 838
AccBSI CCGCTC 1 cut(s) 451
AccII CGCG 1 cut(s) 330
AciI CCGC 4 cut(s) 225, 264, 316, 449
AclWI GGATC 1 cut(s) 192
AcoI YGGCCR 1 cut(s) 446
AcsI RAATTY 1 cut(s) 106
AcuI CTGAAG 1 cut(s) 522
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 4 cut(s) 348, 460, 700, 838
AflII CTTAAG 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 606
AgsI TTSAA 5 cut(s) 112, 195, 431, 518, 626
AhlI ACTAGT 1 cut(s) 218
AjnI CCWGG 2 cut(s) 200, 837
AluBI AGCT 4 cut(s) 338, 368, 652, 709
AluI AGCT 4 cut(s) 338, 368, 652, 709
AlwI GGATC 1 cut(s) 192
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 3 cut(s) 70, 157, 446
ApeKI GCWGC 2 cut(s) 663, 706
ApoI RAATTY 1 cut(s) 106
ArsI GACNNNNNNTTYG 4 cut(s) 497, 521, 529, 553
AseI ATTAAT 1 cut(s) 83
Asp700I GAANNNNTTC 3 cut(s) 169, 220, 522
AspLEI GCGC 2 cut(s) 324, 749
AspS9I GGNCC 1 cut(s) 552
AsuHPI GGTGA 2 cut(s) 65, 683
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 552
BaeGI GKGCMC 2 cut(s) 296, 313
BbsI GAAGAC 1 cut(s) 510
BbvI GCAGC 2 cut(s) 675, 718
BccI CCATC 1 cut(s) 388
BceAI ACGGC 2 cut(s) 144, 233
BciT130I CCWGG 2 cut(s) 202, 839
BciVI GTATCC 1 cut(s) 460
BcuI ACTAGT 1 cut(s) 218
BfaI CTAG 1 cut(s) 219
BfoI RGCGCY 1 cut(s) 325
BfrI CTTAAG 1 cut(s) 131
BfuI GTATCC 1 cut(s) 460
BglII AGATCT 1 cut(s) 565
BisI GCNGC 3 cut(s) 449, 664, 707
BlsI GCNGC 3 cut(s) 450, 665, 708
Bme1390I CCNGG 2 cut(s) 202, 839
Bme18I GGWCC 1 cut(s) 552
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 552
BmrFI CCNGG 2 cut(s) 202, 839
BmsI GCATC 2 cut(s) 443, 697
BpiI GAAGAC 1 cut(s) 510
BpmI CTGGAG 1 cut(s) 223
BsaJI CCNNGG 1 cut(s) 837
BsaWI WCCGGW 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 4 cut(s) 348, 460, 700, 838
Bse3DI GCAATG 1 cut(s) 384
BseBI CCWGG 2 cut(s) 202, 839
BseDI CCNNGG 1 cut(s) 837
BseGI GGATG 1 cut(s) 380
BseLI CCNNNNNNNGG 4 cut(s) 348, 460, 700, 838
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 1 cut(s) 777
BseSI GKGCMC 2 cut(s) 296, 313
BseX3I CGGCCG 1 cut(s) 446
BseXI GCAGC 2 cut(s) 675, 718
Bsh1236I CGCG 1 cut(s) 330
Bsh1285I CGRYCG 1 cut(s) 449
BshFI GGCC 3 cut(s) 72, 159, 448
BsiEI CGRYCG 1 cut(s) 449
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 4 cut(s) 348, 460, 700, 838
BsnI GGCC 3 cut(s) 72, 159, 448
BsoBI CYCGRG 1 cut(s) 186
Bsp1286I GDGCHC 2 cut(s) 296, 313
Bsp143I GATC 5 cut(s) 96, 197, 541, 565, 844
Bsp68I TCGCGA 1 cut(s) 330
BspACI CCGC 4 cut(s) 225, 264, 316, 449
BspANI GGCC 3 cut(s) 72, 159, 448
BspCNI CTCAG 1 cut(s) 778
BspFNI CGCG 1 cut(s) 330
BspPI GGATC 1 cut(s) 192
BspTI CTTAAG 1 cut(s) 131
BsrBI CCGCTC 1 cut(s) 451
BsrDI GCAATG 1 cut(s) 384
BssECI CCNNGG 1 cut(s) 837
BssMI GATC 5 cut(s) 96, 197, 541, 565, 844
Bst2UI CCWGG 2 cut(s) 202, 839
Bst4CI ACNGT 1 cut(s) 170
Bst6I CTCTTC 2 cut(s) 148, 648
BstAFI CTTAAG 1 cut(s) 131
BstC8I GCNNGC 3 cut(s) 370, 575, 711
BstDEI CTNAG 3 cut(s) 484, 569, 786
BstENI CCTNNNNNAGG 1 cut(s) 346
BstF5I GGATG 1 cut(s) 380
BstFNI CGCG 1 cut(s) 330
BstH2I RGCGCY 1 cut(s) 325
BstHHI GCGC 2 cut(s) 324, 749
BstKTI GATC 5 cut(s) 99, 200, 544, 568, 847
BstMBI GATC 5 cut(s) 96, 197, 541, 565, 844
BstMCI CGRYCG 1 cut(s) 449
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNI CCWGG 2 cut(s) 202, 839
BstNSI RCATGY 2 cut(s) 577, 610
BstSCI CCNGG 2 cut(s) 200, 837
BstSLI GKGCMC 2 cut(s) 296, 313
BstUI CGCG 1 cut(s) 330
BstV1I GCAGC 2 cut(s) 675, 718
BstV2I GAAGAC 1 cut(s) 510
BstX2I RGATCY 2 cut(s) 197, 565
BstYI RGATCY 2 cut(s) 197, 565
BstZI CGGCCG 1 cut(s) 446
BsuI GTATCC 1 cut(s) 460
BsuRI GGCC 3 cut(s) 72, 159, 448
BtgZI GCGATG 1 cut(s) 360
BtsCI GGATG 1 cut(s) 380
BtuMI TCGCGA 1 cut(s) 330
Cac8I GCNNGC 3 cut(s) 370, 575, 711
CfoI GCGC 2 cut(s) 324, 749
Cfr13I GGNCC 1 cut(s) 552
Csp6I GTAC 1 cut(s) 276
CviAII CATG 4 cut(s) 145, 574, 607, 700
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 3 cut(s) 484, 569, 786
DpnI GATC 5 cut(s) 98, 199, 543, 567, 846
DpnII GATC 5 cut(s) 96, 197, 541, 565, 844
DraI TTTAAA 1 cut(s) 474
EaeI YGGCCR 1 cut(s) 446
EagI CGGCCG 1 cut(s) 446
Eam1104I CTCTTC 2 cut(s) 148, 648
EarI CTCTTC 2 cut(s) 148, 648
EciI GGCGGA 1 cut(s) 214
EclXI CGGCCG 1 cut(s) 446
Eco147I AGGCCT 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 552
Eco52I CGGCCG 1 cut(s) 446
Eco57I CTGAAG 1 cut(s) 522
Eco88I CYCGRG 1 cut(s) 186
EcoNI CCTNNNNNAGG 1 cut(s) 346
EcoRII CCWGG 2 cut(s) 200, 837
EcoT22I ATGCAT 1 cut(s) 690
FaeI CATG 4 cut(s) 148, 577, 610, 703
FatI CATG 4 cut(s) 144, 573, 606, 699
FauI CCCGC 2 cut(s) 271, 309
Fnu4HI GCNGC 3 cut(s) 449, 664, 707
FokI GGATG 1 cut(s) 367
Fsp4HI GCNGC 3 cut(s) 449, 664, 707
FspBI CTAG 1 cut(s) 219
GlaI GCGC 2 cut(s) 323, 748
GluI GCNGC 3 cut(s) 449, 664, 707
GsuI CTGGAG 1 cut(s) 223
HaeII RGCGCY 1 cut(s) 325
HaeIII GGCC 3 cut(s) 72, 159, 448
HapII CCGG 1 cut(s) 9
HhaI GCGC 2 cut(s) 324, 749
Hin1II CATG 4 cut(s) 148, 577, 610, 703
Hin6I GCGC 2 cut(s) 322, 747
HinP1I GCGC 2 cut(s) 322, 747
HindIII AAGCTT 1 cut(s) 650
HinfI GANTC 4 cut(s) 116, 127, 497, 523
HpaII CCGG 1 cut(s) 9
HphI GGTGA 2 cut(s) 65, 683
Hpy166II GTNNAC 1 cut(s) 417
Hpy188I TCNGA 5 cut(s) 256, 407, 439, 502, 615
Hpy188III TCNNGA 5 cut(s) 18, 120, 195, 329, 527
Hpy8I GTNNAC 1 cut(s) 417
Hpy99I CGWCG 2 cut(s) 165, 248
HpyAV CCTTC 2 cut(s) 134, 335
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 6 cut(s) 282, 389, 577, 663, 688, 713
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 3 cut(s) 484, 569, 786
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 4 cut(s) 148, 577, 610, 703
HspAI GCGC 2 cut(s) 322, 747
Kzo9I GATC 5 cut(s) 96, 197, 541, 565, 844
LmnI GCTCC 4 cut(s) 204, 319, 456, 703
LpnPI CCDG 9 cut(s) 3, 22, 187, 214, 309, 378, 468, 824, 851
Lsp1109I GCAGC 2 cut(s) 675, 718
LweI GCATC 2 cut(s) 443, 697
MaeI CTAG 1 cut(s) 219
MaeII ACGT 1 cut(s) 243
MalI GATC 5 cut(s) 98, 199, 543, 567, 846
MbiI CCGCTC 1 cut(s) 451
MboI GATC 5 cut(s) 96, 197, 541, 565, 844
MboII GAAGA 7 cut(s) 165, 165, 168, 171, 174, 515, 635
MflI RGATCY 2 cut(s) 197, 565
MhlI GDGCHC 2 cut(s) 296, 313
MluCI AATT 5 cut(s) 106, 475, 600, 626, 763
MlyI GAGTC 2 cut(s) 110, 121
Mph1103I ATGCAT 1 cut(s) 690
MroXI GAANNNNTTC 3 cut(s) 169, 220, 522
MseI TTAA 5 cut(s) 83, 132, 393, 473, 735
MslI CAYNNNNRTG 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 316
MspCI CTTAAG 1 cut(s) 131
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 2 cut(s) 202, 839
MvaI CCWGG 2 cut(s) 202, 839
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 1 cut(s) 308
NdeII GATC 5 cut(s) 96, 197, 541, 565, 844
NlaIII CATG 4 cut(s) 148, 577, 610, 703
NmeAIII GCCGAG 1 cut(s) 253
NruI TCGCGA 1 cut(s) 330
NsiI ATGCAT 1 cut(s) 690
NspI RCATGY 2 cut(s) 577, 610
PaeI GCATGC 1 cut(s) 577
PceI AGGCCT 1 cut(s) 72
PciI ACATGT 1 cut(s) 606
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PdmI GAANNNNTTC 3 cut(s) 169, 220, 522
PfeI GAWTC 2 cut(s) 497, 523
PflMI CCANNNNNTGG 1 cut(s) 838
PfoI TCCNGGA 1 cut(s) 200
PkrI GCNGC 3 cut(s) 450, 665, 708
PleI GAGTC 2 cut(s) 110, 121
PpsI GAGTC 2 cut(s) 110, 121
PscI ACATGT 1 cut(s) 606
PshBI ATTAAT 1 cut(s) 83
Psp6I CCWGG 2 cut(s) 200, 837
PspGI CCWGG 2 cut(s) 200, 837
PspPI GGNCC 1 cut(s) 552
PsuI RGATCY 2 cut(s) 197, 565
RruI TCGCGA 1 cut(s) 330
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
RseI CAYNNNNRTG 1 cut(s) 287
SaqAI TTAA 5 cut(s) 83, 132, 393, 473, 735
SatI GCNGC 3 cut(s) 449, 664, 707
Sau3AI GATC 5 cut(s) 96, 197, 541, 565, 844
Sau96I GGNCC 1 cut(s) 552
SchI GAGTC 2 cut(s) 110, 121
ScrFI CCNGG 2 cut(s) 202, 839
SduI GDGCHC 2 cut(s) 296, 313
SfaNI GCATC 2 cut(s) 443, 697
SinI GGWCC 1 cut(s) 552
SmiMI CAYNNNNRTG 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SpeI ACTAGT 1 cut(s) 218
SphI GCATGC 1 cut(s) 577
Sse9I AATT 5 cut(s) 106, 475, 600, 626, 763
SseBI AGGCCT 1 cut(s) 72
SsiI CCGC 4 cut(s) 225, 264, 316, 449
SspI AATATT 1 cut(s) 583
SspMI CTAG 1 cut(s) 219
StuI AGGCCT 1 cut(s) 72
StyD4I CCNGG 2 cut(s) 200, 837
TaaI ACNGT 1 cut(s) 170
TaiI ACGT 1 cut(s) 246
TaqI TCGA 5 cut(s) 104, 121, 163, 544, 655
TasI AATT 5 cut(s) 106, 475, 600, 626, 763
TauI GCSGC 1 cut(s) 451
TfiI GAWTC 2 cut(s) 497, 523
Tru1I TTAA 5 cut(s) 83, 132, 393, 473, 735
Tru9I TTAA 5 cut(s) 83, 132, 393, 473, 735
TseI GCWGC 2 cut(s) 663, 706
TspDTI ATGAA 5 cut(s) 620, 635, 789, 803, 843
Van91I CCANNNNNTGG 1 cut(s) 838
Vha464I CTTAAG 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 552
VspI ATTAAT 1 cut(s) 83
XagI CCTNNNNNAGG 1 cut(s) 346
XapI RAATTY 1 cut(s) 106
XceI RCATGY 2 cut(s) 577, 610
XmnI GAANNNNTTC 3 cut(s) 169, 220, 522
XspI CTAG 1 cut(s) 219
Zsp2I ATGCAT 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.