Rh1CG095000

SAC3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003610
Physical Location & Seq
Reverse (-)
20287733 .. 20295529
7797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG095000.1

Sequence Viewer

Length: 963 bp
ATGGAGAGAAGAGGCCGTCGAAACCGTTCTTCTTCTTCTTCTTTTTCTTCTCGGGGTTCAAGATCCTGGAGCAGAGGTGGAACTAGTTCCGCCGAGAAAGTGGAAAACGTCGCCGTTTCCGATGTTCCCGCCATAGTGGGTACTTGCACTTTGATGTGCCCAGAAGCAGAAAGGGCACAGCGGGAGCGCCTTCGCGATTTAGCTACCTTTGAGAGGCTAAATGGAAATCCAGCTCGCTCATCGCCATCCATTGCAGTTAAAAAGTTTTTCAGAACTATGTCCACCAAACAAGTTCAAGCATCAGATGTCCGGCCGCTCCCTGTTTTGGAGGATACTTTAAATTACCTCCTAGAGTTGTTTGATTCTAAAGACTATCCTTTTGAAGTGATTCACGACTTCCTCTTTGATCGAACAAGGTCCATAAGGCAAGATCTTAGCATGCAGAATATTGGTGGCGAGAAAGCAATTCACATGTATCAGGAAATGGTTAAATTTCATATCATCTCTCTTCATAAGCTTCGAGGTTGCAGCAGTCAAAATACTTCTCCAATGCATCACCTCAACATGGAGCAGCTTGCAAAGACCTTGACATCTCTATTTAATCTGTATGGCGCAAATCGTCATTCTAATTCTACTAATGAAAATGAGGCTGAGTTTTGTTCTTTTTATGTGCTACTTCATCTTGGTTCTCATAGCCAACCCCTGGGGGAGTCACTTTCTTGGTGGTTTAGTCATGTTCCTTCTTCGATAATCAAGTCAAAGGAAATGCATTTTTCCCGAAAGATTTTACGATATTTTCGGATGGGTAACTATAAACGTTTCTTAAGTACTGTAGCAGCTGAGGCATCTTATCTTCAATACTGCATTATTGAGCCTTGTGTTGATGAGGTAAATGACTTTATATCATGTTATCATTACTTTTTTGGGTTTGCAATTTTGAACTCTATGGACCAACTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAC3_GANP

Protein Analysis

320

Amino Acids

36.71

Weight (kDa)

8.78

Isoelectric Point (pI)

58.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAC3_GANP PF03399 52 - 297 1.1e-69 SAC3/GANP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 703
AccBSI CCGCTC 1 cut(s) 316
AccII CGCG 1 cut(s) 195
AciI CCGC 4 cut(s) 90, 129, 181, 314
AclI AACGTT 1 cut(s) 817
AclWI GGATC 1 cut(s) 57
AcoI YGGCCR 1 cut(s) 311
AcsI RAATTY 1 cut(s) 491
AfaI GTAC 2 cut(s) 142, 829
AfiI CCNNNNNNNGG 4 cut(s) 213, 325, 565, 703
AflII CTTAAG 1 cut(s) 823
AflIII ACRYGT 1 cut(s) 471
AgsI TTSAA 5 cut(s) 60, 296, 383, 857, 940
AhlI ACTAGT 1 cut(s) 83
AjnI CCWGG 2 cut(s) 65, 702
AluBI AGCT 5 cut(s) 203, 233, 517, 574, 839
AluI AGCT 5 cut(s) 203, 233, 517, 574, 839
AlwI GGATC 1 cut(s) 57
Ama87I CYCGRG 1 cut(s) 51
AoxI GGCC 2 cut(s) 13, 311
ApeKI GCWGC 3 cut(s) 528, 571, 836
ApoI RAATTY 1 cut(s) 491
ArsI GACNNNNNNTTYG 4 cut(s) 362, 386, 394, 418
Asp700I GAANNNNTTC 3 cut(s) 25, 85, 387
AspLEI GCGC 2 cut(s) 189, 614
AspS9I GGNCC 2 cut(s) 417, 949
AsuHPI GGTGA 1 cut(s) 548
AvaI CYCGRG 1 cut(s) 51
AvaII GGWCC 2 cut(s) 417, 949
BaeGI GKGCMC 2 cut(s) 161, 178
BbvCI CCTCAGC 1 cut(s) 840
BbvI GCAGC 3 cut(s) 540, 583, 848
BccI CCATC 2 cut(s) 253, 796
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 2 cut(s) 67, 704
BciVI GTATCC 1 cut(s) 325
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 2 cut(s) 84, 350
BfmI CTRYAG 1 cut(s) 831
BfoI RGCGCY 1 cut(s) 190
BfrI CTTAAG 1 cut(s) 823
BfuI GTATCC 1 cut(s) 325
BglII AGATCT 1 cut(s) 430
BisI GCNGC 4 cut(s) 314, 529, 572, 837
BlsI GCNGC 4 cut(s) 315, 530, 573, 838
BmcAI AGTACT 1 cut(s) 829
Bme1390I CCNGG 2 cut(s) 67, 704
Bme18I GGWCC 2 cut(s) 417, 949
BmeT110I CYCGRG 1 cut(s) 51
BmgT120I GGNCC 2 cut(s) 417, 949
BmrFI CCNGG 2 cut(s) 67, 704
BmsI GCATC 3 cut(s) 308, 562, 854
BpmI CTGGAG 1 cut(s) 88
Bpu10I CCTNAGC 1 cut(s) 840
BsaJI CCNNGG 2 cut(s) 702, 703
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bsc4I CCNNNNNNNGG 4 cut(s) 213, 325, 565, 703
Bse3DI GCAATG 1 cut(s) 249
BseBI CCWGG 2 cut(s) 67, 704
BseDI CCNNGG 2 cut(s) 702, 703
BseGI GGATG 2 cut(s) 245, 807
BseLI CCNNNNNNNGG 4 cut(s) 213, 325, 565, 703
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 2 cut(s) 642, 831
BseSI GKGCMC 2 cut(s) 161, 178
BseX3I CGGCCG 1 cut(s) 311
BseXI GCAGC 3 cut(s) 540, 583, 848
Bsh1236I CGCG 1 cut(s) 195
Bsh1285I CGRYCG 1 cut(s) 314
BshFI GGCC 2 cut(s) 15, 313
BsiEI CGRYCG 1 cut(s) 314
BsiHKCI CYCGRG 1 cut(s) 51
BsiSI CCGG 1 cut(s) 310
BslI CCNNNNNNNGG 4 cut(s) 213, 325, 565, 703
BsnI GGCC 2 cut(s) 15, 313
BsoBI CYCGRG 1 cut(s) 51
Bsp1286I GDGCHC 2 cut(s) 161, 178
Bsp143I GATC 3 cut(s) 62, 406, 430
Bsp68I TCGCGA 1 cut(s) 195
BspACI CCGC 4 cut(s) 90, 129, 181, 314
BspANI GGCC 2 cut(s) 15, 313
BspCNI CTCAG 2 cut(s) 643, 832
BspFNI CGCG 1 cut(s) 195
BspPI GGATC 1 cut(s) 57
BspTI CTTAAG 1 cut(s) 823
BsrBI CCGCTC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 249
BssECI CCNNGG 2 cut(s) 702, 703
BssMI GATC 3 cut(s) 62, 406, 430
Bst2UI CCWGG 2 cut(s) 67, 704
Bst4CI ACNGT 2 cut(s) 26, 832
Bst6I CTCTTC 2 cut(s) 4, 513
BstAFI CTTAAG 1 cut(s) 823
BstC8I GCNNGC 3 cut(s) 235, 440, 576
BstDEI CTNAG 3 cut(s) 434, 651, 840
BstENI CCTNNNNNAGG 1 cut(s) 211
BstF5I GGATG 2 cut(s) 245, 807
BstFNI CGCG 1 cut(s) 195
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 2 cut(s) 189, 614
BstKTI GATC 3 cut(s) 65, 409, 433
BstMBI GATC 3 cut(s) 62, 406, 430
BstMCI CGRYCG 1 cut(s) 314
BstMWI GCNNNNNNNGC 2 cut(s) 173, 842
BstNI CCWGG 2 cut(s) 67, 704
BstNSI RCATGY 2 cut(s) 442, 475
BstSCI CCNGG 2 cut(s) 65, 702
BstSFI CTRYAG 1 cut(s) 831
BstSLI GKGCMC 2 cut(s) 161, 178
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 3 cut(s) 540, 583, 848
BstX2I RGATCY 2 cut(s) 62, 430
BstYI RGATCY 2 cut(s) 62, 430
BstZI CGGCCG 1 cut(s) 311
BsuI GTATCC 1 cut(s) 325
BsuRI GGCC 2 cut(s) 15, 313
BtgZI GCGATG 1 cut(s) 225
BtsCI GGATG 2 cut(s) 245, 807
BtuMI TCGCGA 1 cut(s) 195
Cac8I GCNNGC 3 cut(s) 235, 440, 576
CfoI GCGC 2 cut(s) 189, 614
Cfr13I GGNCC 2 cut(s) 417, 949
Csp6I GTAC 2 cut(s) 141, 828
CviAII CATG 6 cut(s) 439, 472, 565, 734, 906, 960
CviQI GTAC 2 cut(s) 141, 828
DdeI CTNAG 3 cut(s) 434, 651, 840
DpnI GATC 3 cut(s) 64, 408, 432
DpnII GATC 3 cut(s) 62, 406, 430
DraI TTTAAA 1 cut(s) 339
EaeI YGGCCR 1 cut(s) 311
EagI CGGCCG 1 cut(s) 311
Eam1104I CTCTTC 2 cut(s) 4, 513
EarI CTCTTC 2 cut(s) 4, 513
EciI GGCGGA 1 cut(s) 79
EclXI CGGCCG 1 cut(s) 311
Eco47I GGWCC 2 cut(s) 417, 949
Eco52I CGGCCG 1 cut(s) 311
Eco88I CYCGRG 1 cut(s) 51
EcoNI CCTNNNNNAGG 1 cut(s) 211
EcoRII CCWGG 2 cut(s) 65, 702
EcoT22I ATGCAT 2 cut(s) 555, 771
FaeI CATG 6 cut(s) 442, 475, 568, 737, 909, 963
FatI CATG 6 cut(s) 438, 471, 564, 733, 905, 959
FauI CCCGC 2 cut(s) 136, 174
Fnu4HI GCNGC 4 cut(s) 314, 529, 572, 837
FokI GGATG 2 cut(s) 232, 814
Fsp4HI GCNGC 4 cut(s) 314, 529, 572, 837
FspBI CTAG 2 cut(s) 84, 350
GlaI GCGC 2 cut(s) 188, 613
GluI GCNGC 4 cut(s) 314, 529, 572, 837
GsuI CTGGAG 1 cut(s) 88
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 2 cut(s) 15, 313
HapII CCGG 1 cut(s) 310
HhaI GCGC 2 cut(s) 189, 614
Hin1II CATG 6 cut(s) 442, 475, 568, 737, 909, 963
Hin6I GCGC 2 cut(s) 187, 612
HinP1I GCGC 2 cut(s) 187, 612
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 3 cut(s) 362, 388, 710
HpaII CCGG 1 cut(s) 310
HphI GGTGA 1 cut(s) 548
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 4 cut(s) 121, 272, 304, 801
Hpy188III TCNNGA 5 cut(s) 60, 194, 392, 479, 777
Hpy8I GTNNAC 1 cut(s) 282
Hpy99I CGWCG 2 cut(s) 21, 113
HpyAV CCTTC 2 cut(s) 200, 750
HpyCH4III ACNGT 2 cut(s) 26, 832
HpyCH4IV ACGT 2 cut(s) 108, 817
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 842
HpyF3I CTNAG 3 cut(s) 434, 651, 840
HpySE526I ACGT 2 cut(s) 108, 817
Hsp92II CATG 6 cut(s) 442, 475, 568, 737, 909, 963
HspAI GCGC 2 cut(s) 187, 612
Kzo9I GATC 3 cut(s) 62, 406, 430
LmnI GCTCC 4 cut(s) 69, 184, 321, 568
LpnPI CCDG 9 cut(s) 52, 79, 174, 243, 323, 333, 464, 689, 716
Lsp1109I GCAGC 3 cut(s) 540, 583, 848
LweI GCATC 3 cut(s) 308, 562, 854
MaeI CTAG 2 cut(s) 84, 350
MaeII ACGT 2 cut(s) 108, 817
MaeIII GTNAC 2 cut(s) 711, 806
MalI GATC 3 cut(s) 64, 408, 432
MbiI CCGCTC 1 cut(s) 316
MboI GATC 3 cut(s) 62, 406, 430
MboII GAAGA 9 cut(s) 21, 21, 24, 27, 30, 39, 500, 735, 845
MflI RGATCY 2 cut(s) 62, 430
MhlI GDGCHC 2 cut(s) 161, 178
MluCI AATT 5 cut(s) 340, 465, 491, 628, 933
MlyI GAGTC 1 cut(s) 719
Mph1103I ATGCAT 2 cut(s) 555, 771
MroXI GAANNNNTTC 3 cut(s) 25, 85, 387
MseI TTAA 5 cut(s) 258, 338, 489, 600, 824
MslI CAYNNNNRTG 1 cut(s) 152
MspA1I CMGCKG 2 cut(s) 181, 839
MspCI CTTAAG 1 cut(s) 823
MspI CCGG 1 cut(s) 310
MspR9I CCNGG 2 cut(s) 67, 704
MvaI CCWGG 2 cut(s) 67, 704
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 173, 842
NdeII GATC 3 cut(s) 62, 406, 430
NlaIII CATG 6 cut(s) 442, 475, 568, 737, 909, 963
NmeAIII GCCGAG 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 711
NruI TCGCGA 1 cut(s) 195
NsiI ATGCAT 2 cut(s) 555, 771
NspI RCATGY 2 cut(s) 442, 475
PaeI GCATGC 1 cut(s) 442
PasI CCCWGGG 1 cut(s) 703
PciI ACATGT 1 cut(s) 471
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PdmI GAANNNNTTC 3 cut(s) 25, 85, 387
PfeI GAWTC 2 cut(s) 362, 388
PflMI CCANNNNNTGG 1 cut(s) 703
PfoI TCCNGGA 1 cut(s) 65
PkrI GCNGC 4 cut(s) 315, 530, 573, 838
PleI GAGTC 1 cut(s) 718
PpsI GAGTC 1 cut(s) 718
PscI ACATGT 1 cut(s) 471
Psp1406I AACGTT 1 cut(s) 817
Psp6I CCWGG 2 cut(s) 65, 702
PspGI CCWGG 2 cut(s) 65, 702
PspPI GGNCC 2 cut(s) 417, 949
PsuI RGATCY 2 cut(s) 62, 430
PvuII CAGCTG 1 cut(s) 839
RruI TCGCGA 1 cut(s) 195
RsaI GTAC 2 cut(s) 142, 829
RsaNI GTAC 2 cut(s) 141, 828
RseI CAYNNNNRTG 1 cut(s) 152
SaqAI TTAA 5 cut(s) 258, 338, 489, 600, 824
SatI GCNGC 4 cut(s) 314, 529, 572, 837
Sau3AI GATC 3 cut(s) 62, 406, 430
Sau96I GGNCC 2 cut(s) 417, 949
ScaI AGTACT 1 cut(s) 829
SchI GAGTC 1 cut(s) 719
ScrFI CCNGG 2 cut(s) 67, 704
SduI GDGCHC 2 cut(s) 161, 178
SfaNI GCATC 3 cut(s) 308, 562, 854
SfcI CTRYAG 1 cut(s) 831
SinI GGWCC 2 cut(s) 417, 949
SmiMI CAYNNNNRTG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 823
SmoI CTYRAG 1 cut(s) 823
SpeI ACTAGT 1 cut(s) 83
SphI GCATGC 1 cut(s) 442
Sse9I AATT 5 cut(s) 340, 465, 491, 628, 933
SsiI CCGC 4 cut(s) 90, 129, 181, 314
SspI AATATT 1 cut(s) 448
SspMI CTAG 2 cut(s) 84, 350
StyD4I CCNGG 2 cut(s) 65, 702
TaaI ACNGT 2 cut(s) 26, 832
TaiI ACGT 2 cut(s) 111, 820
TaqI TCGA 4 cut(s) 19, 409, 520, 746
TasI AATT 5 cut(s) 340, 465, 491, 628, 933
TatI WGTACW 1 cut(s) 827
TauI GCSGC 1 cut(s) 316
TfiI GAWTC 2 cut(s) 362, 388
Tru1I TTAA 5 cut(s) 258, 338, 489, 600, 824
Tru9I TTAA 5 cut(s) 258, 338, 489, 600, 824
TseFI GTSAC 1 cut(s) 711
TseI GCWGC 3 cut(s) 528, 571, 836
Tsp45I GTSAC 1 cut(s) 711
TspDTI ATGAA 4 cut(s) 485, 500, 654, 668
Van91I CCANNNNNTGG 1 cut(s) 703
Vha464I CTTAAG 1 cut(s) 823
VpaK11BI GGWCC 2 cut(s) 417, 949
XagI CCTNNNNNAGG 1 cut(s) 211
XapI RAATTY 1 cut(s) 491
XceI RCATGY 2 cut(s) 442, 475
XmnI GAANNNNTTC 3 cut(s) 25, 85, 387
XspI CTAG 2 cut(s) 84, 350
ZrmI AGTACT 1 cut(s) 829
Zsp2I ATGCAT 2 cut(s) 555, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.