Rh1AG099000

SAC3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003610
Physical Location & Seq
Reverse (-)
17257750 .. 17270834
13085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG099000.1

Sequence Viewer

Length: 1137 bp
ATGGAGAGAAGAGGCCGTCGAAACCGTTCTTCTTCTTCTTTTTCTTCTCGGGGTTCAAGATCCTGGAGCAGAGGTGGAACTAGTTCCGCCGAGAAAGTGGAAAACGTCGCCGTTTCCGATGTTCCCGCCATAGTGGGTACTTGCACTTTGATGTGCCCAGAAGCAGAAAGGGCACAGCGGGAGCGCCTTCGCGATTTAGCTACCTTTGAGAGGCTAAATGGAAATCCAGCTCGCTCATCGCCATCCATTGCAGTTAAAAAGTTTTTCAGAACTATGTCCACCAAACAAGTTCAAGCATCAGATGTTCGGCCGCTCCCTGTTTTGGAGGATACTTTAAATTACCTCCTAGAGTTGTTTGATTCTAAAGACTATCCTTTTGAAGTGATTCACGACTTCCTCTTTGATCGAACAAGGTCCATAAGGCAAGATCTTAGCATGCAGAATATTGGTGGCGAGAAAGCAATTCACATGTATCAGAAAATGGTTAAATTTCATATCATCTCTCTTCATAAGCTTAGAGGTTGCAGCAGTCAAAATACTTCTCCAATGCATCACCTCAACATGGAGCAGCTTGCAAAGACCTTGACATCTCTATTTAATCTGTATGGCGCAAATCGTCATTCCAATTCCACTAATGAAAATGAGGCTGAGTTTTGTTCTTTTTATGTGCTACTTCATCTTGGTTCTCATAGCCAACCCCTGGGGGAGTCACTTTCTTGGTGGTTTAGTCATGTGCCTTCTTCGATAATCAAGTCAAAGGAAATGCATTTTTCCCGAAAGATTTTACGATATTTTCGGATGGGTAACTATAAACGTTTCTTAAGTACTGTAGCAGCTGAGGCATCTTATCTTCAATACTGCATTATTGAGCCTTATGTTGATGAGGTTCGAGTTTTAGCTGTGTCATGCATCAATAGTGGTGGCTACAAGCTTCATCCATATCCTCTATCGCATTTATCCAAACTCTTGATTATGAAGGAATCAGATTTGGAATCTTTTCTCAAATCCTGTGGTCTTCAAATTTGCACTGATGAAGAAGGACATAATCTGTTGCCCACTAAGCAAACGACCTTTTGTCAACCCAAGGATGGGTCTCAAAACTACAGGTTTTGGGGTATGGAACAATTTGATAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAC3_GANP

Protein Analysis

378

Amino Acids

43.34

Weight (kDa)

9.04

Isoelectric Point (pI)

56.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAC3_GANP PF03399 51 - 341 2.5e-80 SAC3/GANP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 700
AccBSI CCGCTC 1 cut(s) 313
AccII CGCG 1 cut(s) 192
AciI CCGC 4 cut(s) 87, 126, 178, 311
AclI AACGTT 1 cut(s) 814
AclWI GGATC 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 308
AcsI RAATTY 2 cut(s) 488, 1020
AfaI GTAC 2 cut(s) 139, 826
AfiI CCNNNNNNNGG 6 cut(s) 210, 322, 562, 700, 1088, 1089
AflII CTTAAG 1 cut(s) 820
AflIII ACRYGT 1 cut(s) 468
AgsI TTSAA 5 cut(s) 57, 293, 380, 854, 1019
AhdI GACNNNNNGTC 1 cut(s) 1074
AhlI ACTAGT 1 cut(s) 80
AjnI CCWGG 2 cut(s) 62, 699
AluBI AGCT 7 cut(s) 200, 230, 514, 571, 836, 899, 931
AluI AGCT 7 cut(s) 200, 230, 514, 571, 836, 899, 931
Alw26I GTCTC 1 cut(s) 1098
AlwI GGATC 1 cut(s) 54
Ama87I CYCGRG 1 cut(s) 48
AoxI GGCC 2 cut(s) 13, 308
ApeKI GCWGC 3 cut(s) 525, 568, 833
ApoI RAATTY 2 cut(s) 488, 1020
ArsI GACNNNNNNTTYG 4 cut(s) 359, 383, 391, 415
Asp700I GAANNNNTTC 4 cut(s) 25, 82, 384, 996
AspLEI GCGC 2 cut(s) 186, 611
AspS9I GGNCC 1 cut(s) 414
AsuHPI GGTGA 1 cut(s) 545
AvaI CYCGRG 1 cut(s) 48
AvaII GGWCC 1 cut(s) 414
BaeGI GKGCMC 2 cut(s) 158, 175
BbsI GAAGAC 1 cut(s) 1007
BbvCI CCTCAGC 1 cut(s) 837
BbvI GCAGC 3 cut(s) 537, 580, 845
BccI CCATC 3 cut(s) 250, 793, 1082
BceAI ACGGC 1 cut(s) 95
BciT130I CCWGG 2 cut(s) 64, 701
BciVI GTATCC 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 1098
BcuI ACTAGT 1 cut(s) 80
BfaI CTAG 2 cut(s) 81, 347
BfmI CTRYAG 2 cut(s) 828, 1102
BfoI RGCGCY 1 cut(s) 187
BfrI CTTAAG 1 cut(s) 820
BfuI GTATCC 1 cut(s) 322
BglII AGATCT 1 cut(s) 427
BisI GCNGC 4 cut(s) 311, 526, 569, 834
BlsI GCNGC 4 cut(s) 312, 527, 570, 835
BmcAI AGTACT 1 cut(s) 826
Bme1390I CCNGG 2 cut(s) 64, 701
Bme18I GGWCC 1 cut(s) 414
BmeRI GACNNNNNGTC 1 cut(s) 1074
BmeT110I CYCGRG 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 414
BmrFI CCNGG 2 cut(s) 64, 701
BmsI GCATC 4 cut(s) 305, 559, 851, 918
BpiI GAAGAC 1 cut(s) 1007
BpmI CTGGAG 1 cut(s) 85
Bpu10I CCTNAGC 1 cut(s) 837
BsaI GGTCTC 1 cut(s) 1098
BsaJI CCNNGG 3 cut(s) 699, 700, 1083
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 6 cut(s) 210, 322, 562, 700, 1088, 1089
Bse3DI GCAATG 1 cut(s) 246
BseBI CCWGG 2 cut(s) 64, 701
BseDI CCNNGG 3 cut(s) 699, 700, 1083
BseGI GGATG 4 cut(s) 242, 804, 934, 1093
BseLI CCNNNNNNNGG 6 cut(s) 210, 322, 562, 700, 1088, 1089
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 2 cut(s) 639, 828
BseSI GKGCMC 2 cut(s) 158, 175
BseX3I CGGCCG 1 cut(s) 308
BseXI GCAGC 3 cut(s) 537, 580, 845
Bsh1236I CGCG 1 cut(s) 192
Bsh1285I CGRYCG 1 cut(s) 311
BshFI GGCC 2 cut(s) 15, 310
BsiEI CGRYCG 1 cut(s) 311
BsiHKCI CYCGRG 1 cut(s) 48
BslI CCNNNNNNNGG 6 cut(s) 210, 322, 562, 700, 1088, 1089
BsmAI GTCTC 1 cut(s) 1098
BsnI GGCC 2 cut(s) 15, 310
Bso31I GGTCTC 1 cut(s) 1098
BsoBI CYCGRG 1 cut(s) 48
Bsp1286I GDGCHC 2 cut(s) 158, 175
Bsp143I GATC 3 cut(s) 59, 403, 427
Bsp68I TCGCGA 1 cut(s) 192
BspACI CCGC 4 cut(s) 87, 126, 178, 311
BspANI GGCC 2 cut(s) 15, 310
BspCNI CTCAG 2 cut(s) 640, 829
BspFNI CGCG 1 cut(s) 192
BspPI GGATC 1 cut(s) 54
BspTI CTTAAG 1 cut(s) 820
BspTNI GGTCTC 1 cut(s) 1098
BsrBI CCGCTC 1 cut(s) 313
BsrDI GCAATG 1 cut(s) 246
BssECI CCNNGG 3 cut(s) 699, 700, 1083
BssMI GATC 3 cut(s) 59, 403, 427
BssT1I CCWWGG 1 cut(s) 1083
Bst2UI CCWGG 2 cut(s) 64, 701
Bst4CI ACNGT 2 cut(s) 26, 829
Bst6I CTCTTC 2 cut(s) 4, 510
BstAFI CTTAAG 1 cut(s) 820
BstC8I GCNNGC 3 cut(s) 232, 437, 573
BstDEI CTNAG 5 cut(s) 431, 515, 648, 837, 1059
BstENI CCTNNNNNAGG 1 cut(s) 208
BstF5I GGATG 4 cut(s) 242, 804, 934, 1093
BstFNI CGCG 1 cut(s) 192
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 2 cut(s) 186, 611
BstKTI GATC 3 cut(s) 62, 406, 430
BstMAI GTCTC 1 cut(s) 1098
BstMBI GATC 3 cut(s) 59, 403, 427
BstMCI CGRYCG 1 cut(s) 311
BstMWI GCNNNNNNNGC 3 cut(s) 170, 839, 1060
BstNI CCWGG 2 cut(s) 64, 701
BstNSI RCATGY 2 cut(s) 439, 472
BstSCI CCNGG 2 cut(s) 62, 699
BstSFI CTRYAG 2 cut(s) 828, 1102
BstSLI GKGCMC 2 cut(s) 158, 175
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 3 cut(s) 537, 580, 845
BstV2I GAAGAC 1 cut(s) 1007
BstX2I RGATCY 2 cut(s) 59, 427
BstYI RGATCY 2 cut(s) 59, 427
BstZI CGGCCG 1 cut(s) 308
BsuI GTATCC 1 cut(s) 322
BsuRI GGCC 2 cut(s) 15, 310
BtgZI GCGATG 1 cut(s) 222
BtsCI GGATG 4 cut(s) 242, 804, 934, 1093
BtsIMutI CAGTG 1 cut(s) 1026
BtuMI TCGCGA 1 cut(s) 192
Cac8I GCNNGC 3 cut(s) 232, 437, 573
CfoI GCGC 2 cut(s) 186, 611
Cfr13I GGNCC 1 cut(s) 414
Csp6I GTAC 2 cut(s) 138, 825
CspCI CAANNNNNGTGG 4 cut(s) 901, 936, 991, 1026
CviAII CATG 5 cut(s) 436, 469, 562, 731, 906
CviQI GTAC 2 cut(s) 138, 825
DdeI CTNAG 5 cut(s) 431, 515, 648, 837, 1059
DpnI GATC 3 cut(s) 61, 405, 429
DpnII GATC 3 cut(s) 59, 403, 427
DraI TTTAAA 1 cut(s) 336
DriI GACNNNNNGTC 1 cut(s) 1074
EaeI YGGCCR 1 cut(s) 308
EagI CGGCCG 1 cut(s) 308
Eam1104I CTCTTC 2 cut(s) 4, 510
Eam1105I GACNNNNNGTC 1 cut(s) 1074
EarI CTCTTC 2 cut(s) 4, 510
EciI GGCGGA 1 cut(s) 76
EclXI CGGCCG 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 1083
Eco31I GGTCTC 1 cut(s) 1098
Eco47I GGWCC 1 cut(s) 414
Eco52I CGGCCG 1 cut(s) 308
Eco88I CYCGRG 1 cut(s) 48
EcoNI CCTNNNNNAGG 1 cut(s) 208
EcoRII CCWGG 2 cut(s) 62, 699
EcoT14I CCWWGG 1 cut(s) 1083
EcoT22I ATGCAT 3 cut(s) 552, 768, 911
ErhI CCWWGG 1 cut(s) 1083
FaeI CATG 5 cut(s) 439, 472, 565, 734, 909
FatI CATG 5 cut(s) 435, 468, 561, 730, 905
FauI CCCGC 2 cut(s) 133, 171
Fnu4HI GCNGC 4 cut(s) 311, 526, 569, 834
FokI GGATG 4 cut(s) 229, 811, 921, 1100
Fsp4HI GCNGC 4 cut(s) 311, 526, 569, 834
FspBI CTAG 2 cut(s) 81, 347
GlaI GCGC 2 cut(s) 185, 610
GluI GCNGC 4 cut(s) 311, 526, 569, 834
GsuI CTGGAG 1 cut(s) 85
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 2 cut(s) 15, 310
HhaI GCGC 2 cut(s) 186, 611
Hin1II CATG 5 cut(s) 439, 472, 565, 734, 909
Hin6I GCGC 2 cut(s) 184, 609
HinP1I GCGC 2 cut(s) 184, 609
HincII GTYRAC 1 cut(s) 1079
HindII GTYRAC 1 cut(s) 1079
HindIII AAGCTT 2 cut(s) 512, 929
HinfI GANTC 5 cut(s) 359, 385, 707, 980, 992
HphI GGTGA 1 cut(s) 545
Hpy166II GTNNAC 2 cut(s) 279, 1079
Hpy188I TCNGA 6 cut(s) 118, 269, 301, 477, 798, 985
Hpy188III TCNNGA 5 cut(s) 57, 191, 389, 774, 967
Hpy8I GTNNAC 2 cut(s) 279, 1079
Hpy99I CGWCG 2 cut(s) 21, 110
HpyAV CCTTC 4 cut(s) 197, 747, 970, 1031
HpyCH4III ACNGT 2 cut(s) 26, 829
HpyCH4IV ACGT 2 cut(s) 105, 814
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 839, 1060
HpyF3I CTNAG 5 cut(s) 431, 515, 648, 837, 1059
HpySE526I ACGT 2 cut(s) 105, 814
Hsp92II CATG 5 cut(s) 439, 472, 565, 734, 909
HspAI GCGC 2 cut(s) 184, 609
Kzo9I GATC 3 cut(s) 59, 403, 427
LmnI GCTCC 4 cut(s) 66, 181, 318, 565
LpnPI CCDG 9 cut(s) 49, 76, 171, 240, 330, 686, 713, 1021, 1090
Lsp1109I GCAGC 3 cut(s) 537, 580, 845
LweI GCATC 4 cut(s) 305, 559, 851, 918
MaeI CTAG 2 cut(s) 81, 347
MaeII ACGT 2 cut(s) 105, 814
MaeIII GTNAC 2 cut(s) 708, 803
MalI GATC 3 cut(s) 61, 405, 429
MbiI CCGCTC 1 cut(s) 313
MboI GATC 3 cut(s) 59, 403, 427
MflI RGATCY 2 cut(s) 59, 427
MhlI GDGCHC 2 cut(s) 158, 175
MluCI AATT 6 cut(s) 337, 462, 488, 625, 1020, 1124
MlyI GAGTC 1 cut(s) 716
Mph1103I ATGCAT 3 cut(s) 552, 768, 911
MroXI GAANNNNTTC 4 cut(s) 25, 82, 384, 996
MseI TTAA 5 cut(s) 255, 335, 486, 597, 821
MslI CAYNNNNRTG 1 cut(s) 149
MspA1I CMGCKG 2 cut(s) 178, 836
MspCI CTTAAG 1 cut(s) 820
MspR9I CCNGG 2 cut(s) 64, 701
MvaI CCWGG 2 cut(s) 64, 701
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 3 cut(s) 170, 839, 1060
NdeII GATC 3 cut(s) 59, 403, 427
NlaIII CATG 5 cut(s) 439, 472, 565, 734, 909
NmeAIII GCCGAG 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 708
NruI TCGCGA 1 cut(s) 192
NsiI ATGCAT 3 cut(s) 552, 768, 911
NspI RCATGY 2 cut(s) 439, 472
PaeI GCATGC 1 cut(s) 439
PasI CCCWGGG 1 cut(s) 700
PciI ACATGT 1 cut(s) 468
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PdmI GAANNNNTTC 4 cut(s) 25, 82, 384, 996
PfeI GAWTC 4 cut(s) 359, 385, 980, 992
PflMI CCANNNNNTGG 1 cut(s) 700
PfoI TCCNGGA 1 cut(s) 62
PkrI GCNGC 4 cut(s) 312, 527, 570, 835
PleI GAGTC 1 cut(s) 715
PpsI GAGTC 1 cut(s) 715
PscI ACATGT 1 cut(s) 468
Psp1406I AACGTT 1 cut(s) 814
Psp6I CCWGG 2 cut(s) 62, 699
PspGI CCWGG 2 cut(s) 62, 699
PspPI GGNCC 1 cut(s) 414
PsuI RGATCY 2 cut(s) 59, 427
PvuII CAGCTG 1 cut(s) 836
RruI TCGCGA 1 cut(s) 192
RsaI GTAC 2 cut(s) 139, 826
RsaNI GTAC 2 cut(s) 138, 825
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 5 cut(s) 255, 335, 486, 597, 821
SatI GCNGC 4 cut(s) 311, 526, 569, 834
Sau3AI GATC 3 cut(s) 59, 403, 427
Sau96I GGNCC 1 cut(s) 414
ScaI AGTACT 1 cut(s) 826
SchI GAGTC 1 cut(s) 716
ScrFI CCNGG 2 cut(s) 64, 701
SduI GDGCHC 2 cut(s) 158, 175
SfaNI GCATC 4 cut(s) 305, 559, 851, 918
SfcI CTRYAG 2 cut(s) 828, 1102
SinI GGWCC 1 cut(s) 414
SmiMI CAYNNNNRTG 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 820
SmoI CTYRAG 1 cut(s) 820
SpeI ACTAGT 1 cut(s) 80
SphI GCATGC 1 cut(s) 439
Sse9I AATT 6 cut(s) 337, 462, 488, 625, 1020, 1124
SsiI CCGC 4 cut(s) 87, 126, 178, 311
SspI AATATT 1 cut(s) 445
SspMI CTAG 2 cut(s) 81, 347
StyD4I CCNGG 2 cut(s) 62, 699
StyI CCWWGG 1 cut(s) 1083
TaaI ACNGT 2 cut(s) 26, 829
TaiI ACGT 2 cut(s) 108, 817
TaqI TCGA 4 cut(s) 19, 406, 743, 889
TasI AATT 6 cut(s) 337, 462, 488, 625, 1020, 1124
TatI WGTACW 1 cut(s) 824
TauI GCSGC 1 cut(s) 313
TfiI GAWTC 4 cut(s) 359, 385, 980, 992
Tru1I TTAA 5 cut(s) 255, 335, 486, 597, 821
Tru9I TTAA 5 cut(s) 255, 335, 486, 597, 821
TscAI CASTG 1 cut(s) 1033
TseFI GTSAC 1 cut(s) 708
TseI GCWGC 3 cut(s) 525, 568, 833
Tsp45I GTSAC 1 cut(s) 708
TspDTI ATGAA 7 cut(s) 482, 497, 651, 665, 923, 989, 1047
TspRI CASTG 1 cut(s) 1033
Van91I CCANNNNNTGG 1 cut(s) 700
Vha464I CTTAAG 1 cut(s) 820
VpaK11BI GGWCC 1 cut(s) 414
XagI CCTNNNNNAGG 1 cut(s) 208
XapI RAATTY 2 cut(s) 488, 1020
XceI RCATGY 2 cut(s) 439, 472
XmnI GAANNNNTTC 4 cut(s) 25, 82, 384, 996
XspI CTAG 2 cut(s) 81, 347
ZrmI AGTACT 1 cut(s) 826
Zsp2I ATGCAT 3 cut(s) 552, 768, 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.