Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0016408

Physical Location & Seq

Genomic Coordinates Forward (+)

23414641 .. 23415262

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g25540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCAGTACATGATGATGACTACAAACTCATACGAACTCCCTTCTTCATTTGTTCAGCAATGGTATCGTCTCTCAAAATCTTTAGCCGAGCAGGCCGCCTGGAAATTTGCCGAAGGAAATGGGATTGACTTGGTTACAATACATCCAGGCTTTGCAATTGGTCCACTATTACGGCCAACTCTTAATCTCACCATCAAGTTTCTTCAGAATCTCATGAGTGGTATCGAAACACCGTCTATAAACTACACATTCGTAGACATTAGAGATATTGCCTCTGCTCATATTCAAGCATTTGAAGTTCCTTCAGCTAAAGGTAGATATTGTTTAGTTGCCCAAGTTGCCGACGGACCCGATACTCTCAAGATTTTGCAACAACTTTACCCCACATTGTGCCTTCCGGAGTACGGCAATCCTCCTGACTCGAAGTTTCGAGTGTCCATAGAGAAAGCAAGAGGTTTGGGAATCACTTTCCACCCTCTGGAGACGAGTCTCAGAGACACTGTTGAAAGCCTCAAGGAGAAGGGCTTCCTCAACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

20.06

Weight (kDa)

6.29

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016408)

Species	Orthologous Gene IDs
malus_domestica	MD02G1303200.v1.1 MD02G1305100.v1.1
pyrus_communis	pycom02g25540 pycom07g01580
rosa_laevigata	RLG00000029566 RLG00000030524 RLG00000030600 RLG00000030603
rosa_multiflora	Rmu_sc0001403.1_g000008 Rmu_sc0001403.1_g000018 Rmu_sc0001403.1_g000020 Rmu_sc0009583.1_g000001
rosa_rugosa	Rorug01G0016300
rosa_samantha	Rh1BG024300 Rh1DG045500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	478
AccI	GTMKAC	1 cut(s)	255
AccIII	TCCGGA	1 cut(s)	397
AciI	CCGC	1 cut(s)	96
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	2 cut(s)	188, 288
AdeI	CACNNNGTG	1 cut(s)	390
AfaI	GTAC	2 cut(s)	8, 404
AfiI	CCNNNNNNNGG	2 cut(s)	404, 478
AgsI	TTSAA	3 cut(s)	287, 296, 506
AjnI	CCWGG	2 cut(s)	98, 145
AluBI	AGCT	1 cut(s)	308
AluI	AGCT	1 cut(s)	308
Alw26I	GTCTC	4 cut(s)	74, 476, 489, 494
Aor13HI	TCCGGA	1 cut(s)	397
AoxI	GGCC	2 cut(s)	93, 173
ApoI	RAATTY	1 cut(s)	104
Asp700I	GAANNNNTTC	1 cut(s)	524
AspS9I	GGNCC	2 cut(s)	161, 347
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	2 cut(s)	161, 347
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	2 cut(s)	188, 421
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BciT130I	CCWGG	2 cut(s)	100, 147
BcoDI	GTCTC	4 cut(s)	74, 476, 489, 494
BglI	GCCNNNNNGGC	1 cut(s)	92
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme1390I	CCNGG	2 cut(s)	100, 147
Bme18I	GGWCC	2 cut(s)	161, 347
BmgT120I	GGNCC	2 cut(s)	161, 347
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	2 cut(s)	100, 147
BpmI	CTGGAG	1 cut(s)	500
BpuEI	CTTGAG	2 cut(s)	344, 497
BsaWI	WCCGGW	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 478
Bse3DI	GCAATG	1 cut(s)	65
BseAI	TCCGGA	1 cut(s)	397
BseBI	CCWGG	2 cut(s)	100, 147
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	2 cut(s)	404, 478
BseMI	GCAATG	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	505
BshFI	GGCC	2 cut(s)	95, 175
BsiSI	CCGG	1 cut(s)	398
BslI	CCNNNNNNNGG	2 cut(s)	404, 478
BsmAI	GTCTC	4 cut(s)	74, 476, 489, 494
BsmBI	CGTCTC	2 cut(s)	74, 476
BsnI	GGCC	2 cut(s)	95, 175
Bsp13I	TCCGGA	1 cut(s)	397
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	2 cut(s)	95, 175
BspCNI	CTCAG	1 cut(s)	504
BspEI	TCCGGA	1 cut(s)	397
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	349
BsrDI	GCAATG	1 cut(s)	65
Bst2UI	CCWGG	2 cut(s)	100, 147
Bst4CI	ACNGT	2 cut(s)	234, 502
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	491
BstF5I	GGATG	1 cut(s)	142
BstMAI	GTCTC	4 cut(s)	74, 476, 489, 494
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 338
BstNI	CCWGG	2 cut(s)	100, 147
BstSCI	CCNGG	2 cut(s)	98, 145
BsuRI	GGCC	2 cut(s)	95, 175
BtsCI	GGATG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	1 cut(s)	93
CciI	TCATGA	1 cut(s)	213
Cfr13I	GGNCC	2 cut(s)	161, 347
Csp6I	GTAC	2 cut(s)	7, 403
CviAII	CATG	2 cut(s)	10, 214
CviJI	RGCY	7 cut(s)	86, 95, 150, 175, 308, 510, 525
CviKI_1	RGCY	7 cut(s)	86, 95, 150, 175, 308, 510, 525
CviQI	GTAC	2 cut(s)	7, 403
DdeI	CTNAG	1 cut(s)	491
DraIII	CACNNNGTG	1 cut(s)	390
EaeI	YGGCCR	1 cut(s)	173
Eco47I	GGWCC	2 cut(s)	161, 347
Eco57I	CTGAAG	2 cut(s)	188, 288
EcoRII	CCWGG	2 cut(s)	98, 145
Esp3I	CGTCTC	2 cut(s)	74, 476
FaeI	CATG	2 cut(s)	13, 217
FaiI	YATR	6 cut(s)	11, 31, 215, 239, 282, 440
FatI	CATG	2 cut(s)	9, 213
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	96
GluI	GCNGC	1 cut(s)	96
GsuI	CTGGAG	1 cut(s)	500
HaeIII	GGCC	2 cut(s)	95, 175
HapII	CCGG	1 cut(s)	398
Hin1II	CATG	2 cut(s)	13, 217
HinfI	GANTC	4 cut(s)	208, 419, 462, 487
HpaII	CCGG	1 cut(s)	398
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	164, 256
Hpy188I	TCNGA	2 cut(s)	207, 494
Hpy188III	TCNNGA	5 cut(s)	214, 361, 398, 416, 479
Hpy8I	GTNNAC	2 cut(s)	164, 256
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	5 cut(s)	51, 107, 312, 404, 514
HpyCH4III	ACNGT	2 cut(s)	234, 502
HpyCH4V	TGCA	3 cut(s)	4, 155, 370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 338
HpyF3I	CTNAG	1 cut(s)	491
Hsp92II	CATG	2 cut(s)	13, 217
Kpn2I	TCCGGA	1 cut(s)	397
LpnPI	CCDG	8 cut(s)	77, 85, 112, 132, 159, 411, 429, 464
MaeIII	GTNAC	1 cut(s)	133
MboII	GAAGA	2 cut(s)	36, 194
MfeI	CAATTG	1 cut(s)	156
MluCI	AATT	2 cut(s)	104, 156
MlyI	GAGTC	2 cut(s)	413, 496
MnlI	CCTC	6 cut(s)	283, 423, 446, 486, 521, 539
MroI	TCCGGA	1 cut(s)	397
MroXI	GAANNNNTTC	1 cut(s)	524
MseI	TTAA	1 cut(s)	183
MslI	CAYNNNNRTG	1 cut(s)	14
MspI	CCGG	1 cut(s)	398
MspR9I	CCNGG	2 cut(s)	100, 147
MunI	CAATTG	1 cut(s)	156
MvaI	CCWGG	2 cut(s)	100, 147
MwoI	GCNNNNNNNGC	2 cut(s)	92, 338
NlaIII	CATG	2 cut(s)	13, 217
NlaIV	GGNNCC	1 cut(s)	349
NmeAIII	GCCGAG	1 cut(s)	112
PagI	TCATGA	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	2 cut(s)	208, 462
PflMI	CCANNNNNTGG	1 cut(s)	478
PkrI	GCNGC	1 cut(s)	97
PleI	GAGTC	2 cut(s)	413, 495
PpsI	GAGTC	2 cut(s)	413, 495
Psp6I	CCWGG	2 cut(s)	98, 145
PspGI	CCWGG	2 cut(s)	98, 145
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	2 cut(s)	161, 347
RsaI	GTAC	2 cut(s)	8, 404
RsaNI	GTAC	2 cut(s)	7, 403
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	1 cut(s)	96
Sau96I	GGNCC	2 cut(s)	161, 347
SchI	GAGTC	2 cut(s)	413, 496
ScrFI	CCNGG	2 cut(s)	100, 147
SetI	ASST	3 cut(s)	310, 316, 457
SinI	GGWCC	2 cut(s)	161, 347
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	359, 512
SmoI	CTYRAG	2 cut(s)	359, 512
Sse9I	AATT	2 cut(s)	104, 156
SsiI	CCGC	1 cut(s)	96
StyD4I	CCNGG	2 cut(s)	98, 145
TaaI	ACNGT	2 cut(s)	234, 502
TaqI	TCGA	3 cut(s)	225, 422, 430
TasI	AATT	2 cut(s)	104, 156
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	2 cut(s)	208, 462
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	1 cut(s)	505
TspDTI	ATGAA	1 cut(s)	36
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	1 cut(s)	505
Van91I	CCANNNNNTGG	1 cut(s)	478
VpaK11BI	GGWCC	2 cut(s)	161, 347
XapI	RAATTY	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.