Rmu_sc0001403.1_g000008

NmrA-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001403.1
OG0016408
Physical Location & Seq
Reverse (-)
17327 .. 19011
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001403.1_g000008.1.cds

Sequence Viewer

Length: 756 bp
atgagcggagaaaggaaggttgtgtgtgttacaggagcttctggtttcatagcttcatggctggtgaagctcttgttacagcgaggttatgtcgtcaaagccaccgttcgtgacccaaataatccgaagaaaacagaacacttgctctcacttgagggagcagaggaaaggcttcatttgttcaaagcagacttgttagaagaggggtcttttgaccttgtagttgatggatgtgaaggtgttttccacacagcatctccggagtggtattttctttcgaaaactttagcagaggaggctgcttggaaatttgctaaagaaaacgggattgacatggtgaccataaatccctcgtatgtgatgggtccgcccttgcagccaactcttaatttgagtgtggagatggttctggatctcaagaaggatgtcaacggagtagcaattgccaattatacatctactgatgttagagatgttgcctctgcacatattcaagcatttgaagttccttcagccactggaagatattgtttagttgcaaatgtcacccctattcacgaggctctgaagattttaaaggaacttcatcctagtttgtgcccacctgaaatatgcgagcatgataccccttctgccccagagtttcaaatatcccaggaaaaagcaaaaagtttgggagttagtttccttccgttggaagtaagtctcagggacactgttgaatgcctaaaggagaagggcttcctcaagccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

251

Amino Acids

27.61

Weight (kDa)

5.32

Isoelectric Point (pI)

27.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 6
AccIII TCCGGA 1 cut(s) 259
AciI CCGC 2 cut(s) 6, 368
AclWI GGATC 1 cut(s) 420
AcsI RAATTY 1 cut(s) 308
AcuI CTGAAG 2 cut(s) 495, 587
AfiI CCNNNNNNNGG 1 cut(s) 694
AgsI TTSAA 5 cut(s) 184, 494, 503, 647, 722
AjnI CCWGG 1 cut(s) 654
AluBI AGCT 3 cut(s) 38, 53, 70
AluI AGCT 3 cut(s) 38, 53, 70
Alw26I GTCTC 1 cut(s) 710
AlwI GGATC 1 cut(s) 420
AlwNI CAGNNNCTG 1 cut(s) 518
Aor13HI TCCGGA 1 cut(s) 259
ApeKI GCWGC 2 cut(s) 299, 376
ApoI RAATTY 1 cut(s) 308
Asp700I GAANNNNTTC 2 cut(s) 171, 740
AspS9I GGNCC 1 cut(s) 365
AsuHPI GGTGA 3 cut(s) 76, 349, 538
AsuII TTCGAA 1 cut(s) 278
AvaII GGWCC 1 cut(s) 365
BaeGI GKGCMC 1 cut(s) 602
BauI CACGAG 1 cut(s) 557
BbvI GCAGC 2 cut(s) 286, 388
BccI CCATC 3 cut(s) 221, 355, 397
BciT130I CCWGG 1 cut(s) 656
BcoDI GTCTC 1 cut(s) 710
BfaI CTAG 1 cut(s) 591
BisI GCNGC 2 cut(s) 300, 377
BlsI GCNGC 2 cut(s) 301, 378
Bme1390I CCNGG 1 cut(s) 656
Bme18I GGWCC 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 1 cut(s) 656
BmsI GCATC 1 cut(s) 263
Bpu14I TTCGAA 1 cut(s) 278
BpuEI CTTGAG 3 cut(s) 173, 401, 731
BsaJI CCNNGG 1 cut(s) 654
BsaWI WCCGGW 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bsc4I CCNNNNNNNGG 1 cut(s) 694
Bse1I ACTGG 1 cut(s) 523
BseAI TCCGGA 1 cut(s) 259
BseBI CCWGG 1 cut(s) 656
BseDI CCNNGG 1 cut(s) 654
BseGI GGATG 3 cut(s) 236, 430, 586
BseLI CCNNNNNNNGG 1 cut(s) 694
BseMII CTCAG 1 cut(s) 721
BseNI ACTGG 1 cut(s) 523
BseRI GAGGAG 1 cut(s) 308
BseSI GKGCMC 1 cut(s) 602
BseXI GCAGC 2 cut(s) 286, 388
BsgI GTGCAG 1 cut(s) 468
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 1 cut(s) 725
BslI CCNNNNNNNGG 1 cut(s) 694
BsmAI GTCTC 1 cut(s) 710
BsmFI GGGAC 1 cut(s) 725
BsmI GAATGC 1 cut(s) 728
Bsp119I TTCGAA 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 602
Bsp13I TCCGGA 1 cut(s) 259
Bsp143I GATC 1 cut(s) 412
BspACI CCGC 2 cut(s) 6, 368
BspCNI CTCAG 1 cut(s) 720
BspEI TCCGGA 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 366
BspPI GGATC 1 cut(s) 420
BspT104I TTCGAA 1 cut(s) 278
BsrBI CCGCTC 1 cut(s) 6
BsrI ACTGG 1 cut(s) 523
BssECI CCNNGG 1 cut(s) 654
BssMI GATC 1 cut(s) 412
BssSI CACGAG 1 cut(s) 557
Bst2BI CACGAG 1 cut(s) 557
Bst2UI CCWGG 1 cut(s) 656
Bst4CI ACNGT 2 cut(s) 106, 718
Bst6I CTCTTC 1 cut(s) 195
BstBI TTCGAA 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 617
BstDEI CTNAG 1 cut(s) 707
BstEII GGTNACC 1 cut(s) 337
BstF5I GGATG 3 cut(s) 236, 430, 586
BstKTI GATC 1 cut(s) 415
BstMAI GTCTC 1 cut(s) 710
BstMBI GATC 1 cut(s) 412
BstMWI GCNNNNNNNGC 3 cut(s) 67, 296, 376
BstNI CCWGG 1 cut(s) 656
BstPI GGTNACC 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 654
BstSLI GKGCMC 1 cut(s) 602
BstV1I GCAGC 2 cut(s) 286, 388
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BtsCI GGATG 3 cut(s) 236, 430, 586
BtsIMutI CAGTG 2 cut(s) 516, 714
Cac8I GCNNGC 1 cut(s) 617
CaiI CAGNNNCTG 1 cut(s) 518
Cfr13I GGNCC 1 cut(s) 365
CviAII CATG 3 cut(s) 57, 334, 620
DdeI CTNAG 1 cut(s) 707
DpnI GATC 1 cut(s) 414
DpnII GATC 1 cut(s) 412
DraI TTTAAA 1 cut(s) 576
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
EciI GGCGGA 1 cut(s) 357
Eco47I GGWCC 1 cut(s) 365
Eco57I CTGAAG 2 cut(s) 495, 587
Eco91I GGTNACC 1 cut(s) 337
EcoO65I GGTNACC 1 cut(s) 337
EcoRII CCWGG 1 cut(s) 654
FaeI CATG 3 cut(s) 60, 337, 623
FaqI GGGAC 1 cut(s) 725
FatI CATG 3 cut(s) 56, 333, 619
Fnu4HI GCNGC 2 cut(s) 300, 377
FokI GGATG 3 cut(s) 243, 437, 573
Fsp4HI GCNGC 2 cut(s) 300, 377
FspBI CTAG 1 cut(s) 591
GluI GCNGC 2 cut(s) 300, 377
HapII CCGG 1 cut(s) 260
Hin1II CATG 3 cut(s) 60, 337, 623
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HpaII CCGG 1 cut(s) 260
HphI GGTGA 3 cut(s) 76, 349, 538
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 2 cut(s) 126, 567
Hpy188III TCNNGA 5 cut(s) 110, 260, 410, 418, 557
Hpy8I GTNNAC 1 cut(s) 430
HpyAV CCTTC 7 cut(s) 10, 230, 415, 519, 639, 698, 730
HpyCH4III ACNGT 2 cut(s) 106, 718
HpyCH4V TGCA 3 cut(s) 376, 485, 539
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 296, 376
HpyF3I CTNAG 1 cut(s) 707
Hsp92II CATG 3 cut(s) 60, 337, 623
Kpn2I TCCGGA 1 cut(s) 259
Kzo9I GATC 1 cut(s) 412
LmnI GCTCC 2 cut(s) 35, 158
Lsp1109I GCAGC 2 cut(s) 286, 388
LweI GCATC 1 cut(s) 263
MaeI CTAG 1 cut(s) 591
MaeIII GTNAC 5 cut(s) 28, 75, 110, 337, 544
MalI GATC 1 cut(s) 414
MbiI CCGCTC 1 cut(s) 6
MboI GATC 1 cut(s) 412
MboII GAAGA 4 cut(s) 139, 212, 534, 580
MfeI CAATTG 1 cut(s) 441
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 1 cut(s) 602
MluCI AATT 4 cut(s) 308, 388, 441, 448
MmeI TCCRAC 1 cut(s) 675
MroI TCCGGA 1 cut(s) 259
MroXI GAANNNNTTC 2 cut(s) 171, 740
MseI TTAA 2 cut(s) 387, 575
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 656
MunI CAATTG 1 cut(s) 441
Mva1269I GAATGC 1 cut(s) 728
MvaI CCWGG 1 cut(s) 656
MwoI GCNNNNNNNGC 3 cut(s) 67, 296, 376
NdeII GATC 1 cut(s) 412
NlaIII CATG 3 cut(s) 60, 337, 623
NlaIV GGNNCC 1 cut(s) 366
NmuCI GTSAC 3 cut(s) 110, 337, 544
NspV TTCGAA 1 cut(s) 278
PctI GAATGC 1 cut(s) 728
PdmI GAANNNNTTC 2 cut(s) 171, 740
PkrI GCNGC 2 cut(s) 301, 378
Psp6I CCWGG 1 cut(s) 654
PspEI GGTNACC 1 cut(s) 337
PspGI CCWGG 1 cut(s) 654
PspN4I GGNNCC 1 cut(s) 366
PspPI GGNCC 1 cut(s) 365
PstNI CAGNNNCTG 1 cut(s) 518
PsuI RGATCY 1 cut(s) 412
SaqAI TTAA 2 cut(s) 387, 575
SatI GCNGC 2 cut(s) 300, 377
Sau3AI GATC 1 cut(s) 412
Sau96I GGNCC 1 cut(s) 365
ScrFI CCNGG 1 cut(s) 656
SduI GDGCHC 1 cut(s) 602
SetI ASST 8 cut(s) 21, 40, 55, 72, 88, 219, 241, 607
SfaNI GCATC 1 cut(s) 263
SfuI TTCGAA 1 cut(s) 278
SinI GGWCC 1 cut(s) 365
SmlI CTYRAG 3 cut(s) 152, 416, 746
SmoI CTYRAG 3 cut(s) 152, 416, 746
Sse9I AATT 4 cut(s) 308, 388, 441, 448
SsiI CCGC 2 cut(s) 6, 368
SspMI CTAG 1 cut(s) 591
StyD4I CCNGG 1 cut(s) 654
TaaI ACNGT 2 cut(s) 106, 718
TaqI TCGA 1 cut(s) 278
TasI AATT 4 cut(s) 308, 388, 441, 448
Tru1I TTAA 2 cut(s) 387, 575
Tru9I TTAA 2 cut(s) 387, 575
TscAI CASTG 2 cut(s) 523, 721
TseFI GTSAC 3 cut(s) 110, 337, 544
TseI GCWGC 2 cut(s) 299, 376
Tsp45I GTSAC 3 cut(s) 110, 337, 544
TspDTI ATGAA 4 cut(s) 37, 45, 164, 575
TspGWI ACGGA 2 cut(s) 447, 681
TspRI CASTG 2 cut(s) 523, 721
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 1 cut(s) 308
XmnI GAANNNNTTC 2 cut(s) 171, 740
XspI CTAG 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.