Rh1DG045500

NmrA-like family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
7467997 .. 7468982
986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG045500.1

Sequence Viewer

Length: 450 bp
ATGGGCGGAGAGAGGAAGGTTGTGTGCGTTACAGGAGCTTCTGGTTTCATAGCTTCATGGCTGGTGAAGATTTTGTTACAGCGAGGTTATGTCGTCAAAGCCACCGTTCGTGACCCAAATGCTCACGAAGTAACAAATGCATATTATTTATCCACTGATGTTAGAGATGTTGCCTCGGCTCATATTCAAGCATTTGAAGTTCCTTCAGCGAGTGGAAGATATTGTTTAGTTGCAAATGTCACCCCCATTTACAAGGCTCTGAAGATTTTAGAACAACTTCATCCGACTTTGTGCCCACCTGAAATATGCGAGCATGATATCCCTTCTGCCCCAGAGTATCAAATATCCCAGGAAAAAGCAAAAAGTTTGGGAGTTAGTTTCCTTCCGTTGGAAGTAAGTCTCAGGGACACTATTGAATGCCTGAAGGAGAAGGGATTCCTCGAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

149

Amino Acids

16.36

Weight (kDa)

6.07

Isoelectric Point (pI)

33.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 440
AciI CCGC 1 cut(s) 6
AcuI CTGAAG 3 cut(s) 189, 281, 443
AfiI CCNNNNNNNGG 1 cut(s) 388
AgsI TTSAA 3 cut(s) 188, 197, 416
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 2 cut(s) 38, 53
AluI AGCT 2 cut(s) 38, 53
Alw26I GTCTC 1 cut(s) 404
Ama87I CYCGRG 1 cut(s) 440
Asp700I GAANNNNTTC 2 cut(s) 276, 434
AsuHPI GGTGA 2 cut(s) 76, 232
AvaI CYCGRG 1 cut(s) 440
BaeGI GKGCMC 1 cut(s) 296
BciT130I CCWGG 1 cut(s) 350
BcoDI GTCTC 1 cut(s) 404
Bme1390I CCNGG 1 cut(s) 350
BmeT110I CYCGRG 1 cut(s) 440
BmrFI CCNGG 1 cut(s) 350
BsaJI CCNNGG 2 cut(s) 174, 348
Bsc4I CCNNNNNNNGG 1 cut(s) 388
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 2 cut(s) 174, 348
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 1 cut(s) 388
BseMII CTCAG 1 cut(s) 415
BseSI GKGCMC 1 cut(s) 296
BsiHKCI CYCGRG 1 cut(s) 440
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 1 cut(s) 388
BsmAI GTCTC 1 cut(s) 404
BsmFI GGGAC 1 cut(s) 419
BsmI GAATGC 1 cut(s) 422
BsoBI CYCGRG 1 cut(s) 440
Bsp1286I GDGCHC 1 cut(s) 296
BspACI CCGC 1 cut(s) 6
BspCNI CTCAG 1 cut(s) 414
BssECI CCNNGG 2 cut(s) 174, 348
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 1 cut(s) 401
BstF5I GGATG 1 cut(s) 280
BstMAI GTCTC 1 cut(s) 404
BstNI CCWGG 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 348
BstSLI GKGCMC 1 cut(s) 296
BtsCI GGATG 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 311
CviAII CATG 2 cut(s) 57, 314
CviJI RGCY 7 cut(s) 38, 53, 61, 101, 179, 257, 446
CviKI_1 RGCY 7 cut(s) 38, 53, 61, 101, 179, 257, 446
DdeI CTNAG 1 cut(s) 401
EciI GGCGGA 1 cut(s) 21
Eco32I GATATC 1 cut(s) 319
Eco57I CTGAAG 3 cut(s) 189, 281, 443
Eco88I CYCGRG 1 cut(s) 440
EcoRII CCWGG 1 cut(s) 348
EcoRV GATATC 1 cut(s) 319
EcoT22I ATGCAT 1 cut(s) 142
FaeI CATG 2 cut(s) 60, 317
FaiI YATR 7 cut(s) 50, 58, 90, 142, 183, 307, 315
FaqI GGGAC 1 cut(s) 419
FatI CATG 2 cut(s) 56, 313
FokI GGATG 1 cut(s) 267
Hin1II CATG 2 cut(s) 60, 317
HinfI GANTC 1 cut(s) 435
HphI GGTGA 2 cut(s) 76, 232
Hpy188I TCNGA 2 cut(s) 261, 285
Hpy188III TCNNGA 2 cut(s) 110, 125
HpyAV CCTTC 6 cut(s) 10, 213, 333, 392, 418, 424
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 2 cut(s) 140, 233
HpyF3I CTNAG 1 cut(s) 401
Hsp92II CATG 2 cut(s) 60, 317
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 9 cut(s) 18, 27, 47, 312, 335, 345, 362, 388, 434
MaeIII GTNAC 5 cut(s) 28, 75, 110, 130, 238
MboII GAAGA 3 cut(s) 79, 228, 274
MhlI GDGCHC 1 cut(s) 296
MmeI TCCRAC 2 cut(s) 308, 369
MnlI CCTC 5 cut(s) 6, 77, 184, 436, 449
Mph1103I ATGCAT 1 cut(s) 142
MroXI GAANNNNTTC 2 cut(s) 276, 434
MspR9I CCNGG 1 cut(s) 350
Mva1269I GAATGC 1 cut(s) 422
MvaI CCWGG 1 cut(s) 350
NlaIII CATG 2 cut(s) 60, 317
NmeAIII GCCGAG 1 cut(s) 155
NmuCI GTSAC 2 cut(s) 110, 238
NsiI ATGCAT 1 cut(s) 142
PaeR7I CTCGAG 1 cut(s) 440
PctI GAATGC 1 cut(s) 422
PdmI GAANNNNTTC 2 cut(s) 276, 434
PfeI GAWTC 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
PspXI VCTCGAGB 1 cut(s) 440
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 1 cut(s) 296
SetI ASST 5 cut(s) 21, 40, 55, 88, 301
Sfr274I CTCGAG 1 cut(s) 440
SlaI CTCGAG 1 cut(s) 440
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
SsiI CCGC 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 106
TaqI TCGA 1 cut(s) 441
TfiI GAWTC 1 cut(s) 435
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 2 cut(s) 110, 238
Tsp45I GTSAC 2 cut(s) 110, 238
TspDTI ATGAA 3 cut(s) 37, 45, 269
TspGWI ACGGA 1 cut(s) 375
TspRI CASTG 1 cut(s) 160
XhoI CTCGAG 1 cut(s) 440
XmnI GAANNNNTTC 2 cut(s) 276, 434
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.