Rh1BG024300

NmrA-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0016408
Physical Location & Seq
Reverse (-)
3199719 .. 3208890
9172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG024300.1

Sequence Viewer

Length: 822 bp
ATGAAGGATCTTTTGACTCTGTGGTTGATGGATGTGACGGTGTTTTCCATACAGCATCTCCGGTACTATTTTCATCGACCAGCGACCCGCAGGGAATGCAATGAGCATTTGTCTCCATATCTTCAGGCAGAACTAATTGACCCTGCTGTGAAGGAAACACTAAATGTTCTGAAATCATGCAAAAAATTTCCAACTGTCAAGCGAGTGGTTTTGACATCTTCTATGGCTTCAGTAATTATGAATCGAAAACCTCTGACCCCTGATGTTGTAGTGGATGAAACATGGTATTCAAATCCACGTATTGCTGAGAAGCTCAAGCTATGGTATCTTCTTTCAAAGACTTTAGCTGAGGAGTCTGCTTGGAAATTTGCTGAAGGAAATGGAATTGACTTGGTTTCAATAAATCCGGGGTTTGGAATTGGACCACTCTTACAGCCGGCAATTAATTTGACCGTGGAGATGATTCAGAATCTCATAATTGGCAAGGCAGTGCCCGCTTCAAATTACATATTGATTGATGTTAGAGATGTTACCTCTGCTCATATTCAAGCATTTGAAGTTCCTTCAGCTACAGGAAGGTATTGTTTGGTCAGCCATGCGGCGCACATTTCCGAGGTTCTAGAGATTATACAACAACTTTATCCCACTTTGCACATTCCTGAAAGATGTGAGGATGACAATCCTCTTTTGCTTCCTTCTGACCCACAGTTTCAAGTATCCAAGGAGAAGGCAAAAGGTCTGGGAATTGGTTTTTATCCATTTGAAGTAACTCTGAAGGACACTATTGAAAGCCTGAAGGACAAGGGCTTCCTCAACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

273

Amino Acids

30.8

Weight (kDa)

6.18

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 88, 495, 599
AclWI GGATC 1 cut(s) 15
AcsI RAATTY 2 cut(s) 185, 365
AcuI CTGAAG 6 cut(s) 107, 213, 393, 549, 794, 815
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 413
AgsI TTSAA 9 cut(s) 291, 336, 399, 501, 548, 557, 713, 764, 788
AluBI AGCT 4 cut(s) 313, 319, 347, 569
AluI AGCT 4 cut(s) 313, 319, 347, 569
Alw26I GTCTC 1 cut(s) 117
AlwI GGATC 1 cut(s) 15
ApoI RAATTY 2 cut(s) 185, 365
AseI ATTAAT 1 cut(s) 444
AspLEI GCGC 1 cut(s) 604
AspS9I GGNCC 1 cut(s) 422
AsuC2I CCSGG 1 cut(s) 408
AvaII GGWCC 1 cut(s) 422
BaeGI GKGCMC 1 cut(s) 495
BbvCI CCTCAGC 1 cut(s) 348
BccI CCATC 1 cut(s) 22
BciVI GTATCC 1 cut(s) 727
BcnI CCSGG 1 cut(s) 408
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 1 cut(s) 620
BfmI CTRYAG 1 cut(s) 570
BfuI GTATCC 1 cut(s) 727
BisI GCNGC 1 cut(s) 600
BlsI GCNGC 1 cut(s) 601
Bme1390I CCNGG 1 cut(s) 408
Bme18I GGWCC 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 422
BmrFI CCNGG 1 cut(s) 408
BmsI GCATC 1 cut(s) 64
Bpu10I CCTNAGC 1 cut(s) 348
BpuEI CTTGAG 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 408
BsaAI YACGTR 1 cut(s) 299
BsaBI GATNNNNATC 1 cut(s) 678
BsaJI CCNNGG 4 cut(s) 407, 453, 612, 720
BsaWI WCCGGW 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 1 cut(s) 413
Bse118I RCCGGY 1 cut(s) 436
Bse3DI GCAATG 1 cut(s) 106
Bse8I GATNNNNATC 1 cut(s) 678
BseDI CCNNGG 4 cut(s) 407, 453, 612, 720
BseGI GGATG 3 cut(s) 37, 280, 679
BseJI GATNNNNATC 1 cut(s) 678
BseLI CCNNNNNNNGG 1 cut(s) 413
BseMI GCAATG 1 cut(s) 106
BseMII CTCAG 2 cut(s) 297, 339
BseRI GAGGAG 1 cut(s) 365
BseSI GKGCMC 1 cut(s) 495
BsiSI CCGG 3 cut(s) 61, 407, 437
BslI CCNNNNNNNGG 1 cut(s) 413
BsmAI GTCTC 1 cut(s) 117
BsmI GAATGC 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 495
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 3 cut(s) 88, 495, 599
BspCNI CTCAG 2 cut(s) 298, 340
BspPI GGATC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 106
BsrFI RCCGGY 1 cut(s) 436
BssAI RCCGGY 1 cut(s) 436
BssECI CCNNGG 4 cut(s) 407, 453, 612, 720
BssMI GATC 1 cut(s) 7
BssT1I CCWWGG 1 cut(s) 720
Bst4CI ACNGT 4 cut(s) 40, 196, 454, 708
BstAPI GCANNNNNTGC 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 299
BstC8I GCNNGC 2 cut(s) 438, 495
BstDEI CTNAG 2 cut(s) 306, 348
BstDSI CCRYGG 1 cut(s) 453
BstF5I GGATG 3 cut(s) 37, 280, 679
BstHHI GCGC 1 cut(s) 604
BstKTI GATC 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 2 cut(s) 96, 494
BstSCI CCNGG 1 cut(s) 406
BstSFI CTRYAG 1 cut(s) 570
BstSLI GKGCMC 1 cut(s) 495
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuI GTATCC 1 cut(s) 727
BtgI CCRYGG 1 cut(s) 453
BtsCI GGATG 3 cut(s) 37, 280, 679
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 1 cut(s) 495
Cac8I GCNNGC 2 cut(s) 438, 495
CfoI GCGC 1 cut(s) 604
Cfr10I RCCGGY 1 cut(s) 436
Cfr13I GGNCC 1 cut(s) 422
Csp6I GTAC 1 cut(s) 64
CviAII CATG 3 cut(s) 177, 282, 596
CviJI RGCY 9 cut(s) 227, 313, 319, 347, 436, 569, 594, 792, 807
CviKI_1 RGCY 9 cut(s) 227, 313, 319, 347, 436, 569, 594, 792, 807
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 2 cut(s) 306, 348
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 720
Eco47I GGWCC 1 cut(s) 422
Eco57I CTGAAG 6 cut(s) 107, 213, 393, 549, 794, 815
EcoT14I CCWWGG 1 cut(s) 720
ErhI CCWWGG 1 cut(s) 720
FaeI CATG 3 cut(s) 180, 285, 599
FatI CATG 3 cut(s) 176, 281, 595
FauI CCCGC 2 cut(s) 95, 502
Fnu4HI GCNGC 1 cut(s) 600
FokI GGATG 3 cut(s) 44, 287, 686
Fsp4HI GCNGC 1 cut(s) 600
FspBI CTAG 1 cut(s) 620
GlaI GCGC 1 cut(s) 603
GluI GCNGC 1 cut(s) 600
HapII CCGG 3 cut(s) 61, 407, 437
HhaI GCGC 1 cut(s) 604
Hin1II CATG 3 cut(s) 180, 285, 599
Hin6I GCGC 1 cut(s) 602
HinP1I GCGC 1 cut(s) 602
HinfI GANTC 5 cut(s) 16, 241, 353, 463, 469
HpaII CCGG 3 cut(s) 61, 407, 437
Hpy188I TCNGA 6 cut(s) 171, 255, 468, 613, 700, 774
Hpy188III TCNNGA 2 cut(s) 620, 659
HpyAV CCTTC 8 cut(s) 145, 368, 570, 573, 705, 721, 769, 790
HpyCH4III ACNGT 4 cut(s) 40, 196, 454, 708
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 3 cut(s) 99, 180, 652
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 494
HpyF3I CTNAG 2 cut(s) 306, 348
HpySE526I ACGT 1 cut(s) 298
Hsp92II CATG 3 cut(s) 180, 285, 599
HspAI GCGC 1 cut(s) 602
KroI GCCGGC 1 cut(s) 436
KroNI GCCGGC 1 cut(s) 438
Kzo9I GATC 1 cut(s) 7
LweI GCATC 1 cut(s) 64
MaeI CTAG 1 cut(s) 620
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 3 cut(s) 34, 529, 766
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 3 cut(s) 113, 210, 320
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 495
MlyI GAGTC 2 cut(s) 10, 362
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 7 cut(s) 261, 343, 544, 607, 664, 693, 821
MroNI GCCGGC 1 cut(s) 436
MseI TTAA 1 cut(s) 444
MspI CCGG 3 cut(s) 61, 407, 437
MspR9I CCNGG 1 cut(s) 408
Mva1269I GAATGC 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 96, 494
NaeI GCCGGC 1 cut(s) 438
NciI CCSGG 1 cut(s) 408
NdeII GATC 1 cut(s) 7
NgoMIV GCCGGC 1 cut(s) 436
NlaIII CATG 3 cut(s) 180, 285, 599
NmuCI GTSAC 1 cut(s) 34
PctI GAATGC 1 cut(s) 101
PdiI GCCGGC 1 cut(s) 438
PfeI GAWTC 3 cut(s) 241, 463, 469
PkrI GCNGC 1 cut(s) 601
PleI GAGTC 2 cut(s) 10, 361
PpsI GAGTC 2 cut(s) 10, 361
Ppu21I YACGTR 1 cut(s) 299
PshBI ATTAAT 1 cut(s) 444
PspPI GGNCC 1 cut(s) 422
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 1 cut(s) 600
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 1 cut(s) 422
SchI GAGTC 2 cut(s) 10, 362
ScrFI CCNGG 1 cut(s) 408
SduI GDGCHC 1 cut(s) 495
SfaNI GCATC 1 cut(s) 64
SfcI CTRYAG 1 cut(s) 570
SinI GGWCC 1 cut(s) 422
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
SsiI CCGC 3 cut(s) 88, 495, 599
SspMI CTAG 1 cut(s) 620
StyD4I CCNGG 1 cut(s) 406
StyI CCWWGG 1 cut(s) 720
TaaI ACNGT 4 cut(s) 40, 196, 454, 708
TaiI ACGT 1 cut(s) 301
TaqI TCGA 2 cut(s) 76, 244
TauI GCSGC 1 cut(s) 602
TfiI GAWTC 3 cut(s) 241, 463, 469
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 1 cut(s) 495
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 4 cut(s) 17, 62, 254, 291
TspRI CASTG 1 cut(s) 495
VpaK11BI GGWCC 1 cut(s) 422
VspI ATTAAT 1 cut(s) 444
XapI RAATTY 2 cut(s) 185, 365
XbaI TCTAGA 1 cut(s) 619
XspI CTAG 1 cut(s) 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.