Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0016408

Physical Location & Seq

Genomic Coordinates Forward (+)

64300278 .. 64301399

Gene Structure 1122 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030600

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCTGCAGTTATATTCAATGGAAGACCTTTAACCTCTAATGTGGTAGTTGATGAAACATGGTTTTCTGATCCACATGTTTGTGAGGAGTTGAAGGAATGGTATTTTCTTTCGAAAACTTTAGCAGAGGAGGCTGCTTGGAAATTTGCTAAGGAAAACGGGATTGACATGGTGACCATAAATCCCTCATATGTGATCGGTCCGCTCCTGCAGCCAACTATTAATTTCAGTGTGGAGATGGTTCTGGATCTCAAGAAGGATGTCAACGGAGTAGCAAGTGCAAATTATACATCTACTGATGTTAGAGATGTTGCCTCGGCTCATATTCAAGCATTTGAAGTTCCTTCAGCTAGTGGAAGATATTGTTTAGTTGCAAATGTCACCCCCATTCACGAGGCTTTGCAGGTTTTAAAGGAACTTCATCCCACTTTGTGCCCACCTGAAATATGTGAGCATGATATACCTTCTGCCACAGGGTTTCAAATATCCCAGGAAAAAGCAAAAAGTTTGGGAGTTAGTTTCCTTCCATTGGAAGTAAGTCTCAGGGACACTATTGAATGCCTGAAGGAGAAGGGTTTTCTCGAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

197

Amino Acids

21.62

Weight (kDa)

4.77

Isoelectric Point (pI)

27.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016408)

Species	Orthologous Gene IDs
malus_domestica	MD02G1303200.v1.1 MD02G1305100.v1.1
pyrus_communis	pycom02g25540 pycom07g01580
rosa_laevigata	RLG00000029566 RLG00000030524 RLG00000030600 RLG00000030603
rosa_multiflora	Rmu_sc0001403.1_g000008 Rmu_sc0001403.1_g000018 Rmu_sc0001403.1_g000020 Rmu_sc0009583.1_g000001
rosa_rugosa	Rorug01G0016300
rosa_samantha	Rh1BG024300 Rh1DG045500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	394
AccBSI	CCGCTC	1 cut(s)	205
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	2 cut(s)	65, 255
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	2 cut(s)	330, 584
AdeI	CACNNNGTG	1 cut(s)	432
AfiI	CCNNNNNNNGG	1 cut(s)	529
AflIII	ACRYGT	1 cut(s)	76
AgsI	TTSAA	6 cut(s)	19, 94, 329, 338, 482, 557
AjnI	CCWGG	1 cut(s)	489
AluBI	AGCT	1 cut(s)	350
AluI	AGCT	1 cut(s)	350
Alw26I	GTCTC	1 cut(s)	545
AlwI	GGATC	2 cut(s)	65, 255
Ama87I	CYCGRG	1 cut(s)	581
ApeKI	GCWGC	3 cut(s)	5, 134, 211
ApoI	RAATTY	1 cut(s)	143
AseI	ATTAAT	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	184, 373
AsuII	TTCGAA	1 cut(s)	113
AvaI	CYCGRG	1 cut(s)	581
AvaII	GGWCC	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	437
BauI	CACGAG	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	121, 223
BccI	CCATC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	491
BcoDI	GTCTC	1 cut(s)	545
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	2 cut(s)	6, 209
BfuAI	ACCTGC	1 cut(s)	394
BisI	GCNGC	3 cut(s)	6, 135, 212
BlsI	GCNGC	3 cut(s)	7, 136, 213
Bme1390I	CCNGG	1 cut(s)	491
Bme18I	GGWCC	1 cut(s)	200
BmeT110I	CYCGRG	1 cut(s)	581
BmgT120I	GGNCC	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	491
BpiI	GAAGAC	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	315, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	2 cut(s)	315, 489
BseGI	GGATG	2 cut(s)	265, 421
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMII	CTCAG	1 cut(s)	556
BseRI	GAGGAG	2 cut(s)	101, 143
BseSI	GKGCMC	1 cut(s)	437
BseXI	GCAGC	2 cut(s)	121, 223
BsiHKCI	CYCGRG	1 cut(s)	581
BslFI	GGGAC	1 cut(s)	560
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmAI	GTCTC	1 cut(s)	545
BsmFI	GGGAC	1 cut(s)	560
BsmI	GAATGC	1 cut(s)	563
BsoBI	CYCGRG	1 cut(s)	581
Bsp119I	TTCGAA	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp143I	GATC	3 cut(s)	70, 195, 247
BspACI	CCGC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	555
BspMAI	CTGCAG	2 cut(s)	10, 213
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	2 cut(s)	65, 255
BspT104I	TTCGAA	1 cut(s)	113
BsrBI	CCGCTC	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	315, 489
BssMI	GATC	3 cut(s)	70, 195, 247
BssSI	CACGAG	1 cut(s)	392
Bst2BI	CACGAG	1 cut(s)	392
Bst2UI	CCWGG	1 cut(s)	491
BstBI	TTCGAA	1 cut(s)	113
BstDEI	CTNAG	2 cut(s)	150, 542
BstEII	GGTNACC	1 cut(s)	172
BstF5I	GGATG	2 cut(s)	265, 421
BstKTI	GATC	3 cut(s)	73, 198, 250
BstMAI	GTCTC	1 cut(s)	545
BstMBI	GATC	3 cut(s)	70, 195, 247
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 211
BstNI	CCWGG	1 cut(s)	491
BstNSI	RCATGY	1 cut(s)	80
BstPI	GGTNACC	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	489
BstSFI	CTRYAG	2 cut(s)	6, 209
BstSLI	GKGCMC	1 cut(s)	437
BstV1I	GCAGC	2 cut(s)	121, 223
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BtsCI	GGATG	2 cut(s)	265, 421
BtsIMutI	CAGTG	1 cut(s)	235
BveI	ACCTGC	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	200
CpoI	CGGWCCG	1 cut(s)	200
CspI	CGGWCCG	1 cut(s)	200
CviAII	CATG	4 cut(s)	60, 77, 169, 455
CviJI	RGCY	7 cut(s)	5, 134, 214, 320, 350, 398, 587
CviKI_1	RGCY	7 cut(s)	5, 134, 214, 320, 350, 398, 587
DdeI	CTNAG	2 cut(s)	150, 542
DpnI	GATC	3 cut(s)	72, 197, 249
DpnII	GATC	3 cut(s)	70, 195, 247
DraI	TTTAAA	1 cut(s)	411
DraIII	CACNNNGTG	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	200
Eco57I	CTGAAG	2 cut(s)	330, 584
Eco88I	CYCGRG	1 cut(s)	581
Eco91I	GGTNACC	1 cut(s)	172
EcoO65I	GGTNACC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	489
FaeI	CATG	4 cut(s)	63, 80, 172, 458
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	4 cut(s)	59, 76, 168, 454
FauNDI	CATATG	1 cut(s)	190
Fnu4HI	GCNGC	3 cut(s)	6, 135, 212
FokI	GGATG	2 cut(s)	272, 408
Fsp4HI	GCNGC	3 cut(s)	6, 135, 212
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	3 cut(s)	6, 135, 212
Hin1II	CATG	4 cut(s)	63, 80, 172, 458
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HphI	GGTGA	2 cut(s)	184, 373
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	4 cut(s)	245, 253, 392, 581
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	7 cut(s)	88, 250, 354, 474, 533, 559, 565
HpyCH4V	TGCA	5 cut(s)	8, 211, 281, 374, 403
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 211
HpyF3I	CTNAG	2 cut(s)	150, 542
Hsp92II	CATG	4 cut(s)	63, 80, 172, 458
Kzo9I	GATC	3 cut(s)	70, 195, 247
LmnI	GCTCC	1 cut(s)	210
LpnPI	CCDG	9 cut(s)	221, 230, 389, 453, 459, 476, 503, 529, 575
Lsp1109I	GCAGC	2 cut(s)	121, 223
MaeI	CTAG	1 cut(s)	351
MaeIII	GTNAC	2 cut(s)	172, 379
MalI	GATC	3 cut(s)	72, 197, 249
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	3 cut(s)	70, 195, 247
MboII	GAAGA	2 cut(s)	36, 369
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	437
MluCI	AATT	3 cut(s)	143, 223, 283
MnlI	CCTC	8 cut(s)	46, 79, 121, 124, 196, 325, 388, 577
MseI	TTAA	3 cut(s)	32, 222, 410
MslI	CAYNNNNRTG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	491
Mva1269I	GAATGC	1 cut(s)	563
MvaI	CCWGG	1 cut(s)	491
MwoI	GCNNNNNNNGC	2 cut(s)	131, 211
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	3 cut(s)	70, 195, 247
NlaIII	CATG	4 cut(s)	63, 80, 172, 458
NmeAIII	GCCGAG	1 cut(s)	296
NmuCI	GTSAC	2 cut(s)	172, 379
NspI	RCATGY	1 cut(s)	80
NspV	TTCGAA	1 cut(s)	113
PaeR7I	CTCGAG	1 cut(s)	581
PciI	ACATGT	1 cut(s)	76
PctI	GAATGC	1 cut(s)	563
PkrI	GCNGC	3 cut(s)	7, 136, 213
PscI	ACATGT	1 cut(s)	76
PshBI	ATTAAT	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	489
PspEI	GGTNACC	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	489
PspPI	GGNCC	1 cut(s)	200
PstI	CTGCAG	2 cut(s)	10, 213
PsuI	RGATCY	1 cut(s)	247
RseI	CAYNNNNRTG	1 cut(s)	81
Rsr2I	CGGWCCG	1 cut(s)	200
RsrII	CGGWCCG	1 cut(s)	200
SaqAI	TTAA	3 cut(s)	32, 222, 410
SatI	GCNGC	3 cut(s)	6, 135, 212
Sau3AI	GATC	3 cut(s)	70, 195, 247
Sau96I	GGNCC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	491
SduI	GDGCHC	1 cut(s)	437
SetI	ASST	6 cut(s)	31, 38, 352, 408, 442, 466
SfcI	CTRYAG	2 cut(s)	6, 209
Sfr274I	CTCGAG	1 cut(s)	581
SfuI	TTCGAA	1 cut(s)	113
SinI	GGWCC	1 cut(s)	200
SlaI	CTCGAG	1 cut(s)	581
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	2 cut(s)	251, 581
SmoI	CTYRAG	2 cut(s)	251, 581
Sse9I	AATT	3 cut(s)	143, 223, 283
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	489
TaqI	TCGA	2 cut(s)	113, 582
TaqII	GACCGA	1 cut(s)	188
TasI	AATT	3 cut(s)	143, 223, 283
Tru1I	TTAA	3 cut(s)	32, 222, 410
Tru9I	TTAA	3 cut(s)	32, 222, 410
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	2 cut(s)	172, 379
TseI	GCWGC	3 cut(s)	5, 134, 211
Tsp45I	GTSAC	2 cut(s)	172, 379
TspDTI	ATGAA	2 cut(s)	69, 410
TspGWI	ACGGA	1 cut(s)	282
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	200
VspI	ATTAAT	1 cut(s)	222
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	80
XhoI	CTCGAG	1 cut(s)	581
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.