Rmu_sc0001403.1_g000020

NmrA-like family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001403.1
Physical Location & Seq
Reverse (-)
100961 .. 101989
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001403.1_g000020.1.cds

Sequence Viewer

Length: 363 bp
atgattcagaatctcataactggcaaggcagtgcccctttcaaattacagattgattgatgttagagatgttgccttggctcatattcaagcatttgaagttccttcagctacaggaaggtattgtttggtcagccatgctgcgcacatttctgaggttctagagattatacaacaactttatcccactttgcacattcctgaaagatgtgaggatgaaaatcctcttttgcttcctactgacccacagtttcaagtatccaaggagaaggcaaaaggtctgggaattggtttttatccatttgaagcaactctgaaggacactattgaaagcctgaaggagaagggctttctcaacatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

13.43

Weight (kDa)

5.49

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 144
AcuI CTGAAG 3 cut(s) 90, 335, 356
AgsI TTSAA 6 cut(s) 42, 89, 98, 254, 305, 329
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 140
AspLEI GCGC 1 cut(s) 145
BaeGI GKGCMC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 127
BciVI GTATCC 1 cut(s) 268
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 111
BfuI GTATCC 1 cut(s) 268
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
BsaBI GATNNNNATC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 75, 261
Bse1I ACTGG 1 cut(s) 25
Bse8I GATNNNNATC 1 cut(s) 219
BseDI CCNNGG 2 cut(s) 75, 261
BseGI GGATG 1 cut(s) 220
BseJI GATNNNNATC 1 cut(s) 219
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 25
BseSI GKGCMC 1 cut(s) 36
BseXI GCAGC 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 36
BspCNI CTCAG 1 cut(s) 145
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 75, 261
BssT1I CCWWGG 2 cut(s) 75, 261
Bst4CI ACNGT 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 220
BstHHI GCGC 1 cut(s) 145
BstSFI CTRYAG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 127
BsuI GTATCC 1 cut(s) 268
BtsCI GGATG 1 cut(s) 220
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
CfoI GCGC 1 cut(s) 145
CviAII CATG 1 cut(s) 137
CviJI RGCY 5 cut(s) 80, 110, 135, 333, 348
CviKI_1 RGCY 5 cut(s) 80, 110, 135, 333, 348
DdeI CTNAG 1 cut(s) 153
Eco130I CCWWGG 2 cut(s) 75, 261
Eco57I CTGAAG 3 cut(s) 90, 335, 356
EcoT14I CCWWGG 2 cut(s) 75, 261
ErhI CCWWGG 2 cut(s) 75, 261
FaeI CATG 1 cut(s) 140
FaiI YATR 4 cut(s) 17, 84, 138, 170
FatI CATG 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 1 cut(s) 161
FspI TGCGCA 1 cut(s) 144
GlaI GCGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 141
HhaI GCGC 1 cut(s) 145
Hin1II CATG 1 cut(s) 140
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HinfI GANTC 2 cut(s) 4, 10
Hpy188I TCNGA 3 cut(s) 9, 154, 315
Hpy188III TCNNGA 2 cut(s) 161, 200
HpyAV CCTTC 6 cut(s) 111, 114, 262, 310, 331, 337
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4V TGCA 1 cut(s) 193
HpyF3I CTNAG 1 cut(s) 153
Hsp92II CATG 1 cut(s) 140
HspAI GCGC 1 cut(s) 143
LpnPI CCDG 5 cut(s) 6, 99, 213, 266, 347
Lsp1109I GCAGC 1 cut(s) 127
MaeI CTAG 1 cut(s) 161
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 2 cut(s) 43, 285
MnlI CCTC 3 cut(s) 148, 205, 234
NlaIII CATG 1 cut(s) 140
NsbI TGCGCA 1 cut(s) 144
PfeI GAWTC 2 cut(s) 4, 10
PkrI GCNGC 1 cut(s) 142
SatI GCNGC 1 cut(s) 141
SduI GDGCHC 1 cut(s) 36
SetI ASST 4 cut(s) 112, 122, 159, 280
SfcI CTRYAG 1 cut(s) 111
Sse9I AATT 2 cut(s) 43, 285
SspMI CTAG 1 cut(s) 161
StyI CCWWGG 2 cut(s) 75, 261
TaaI ACNGT 1 cut(s) 249
TasI AATT 2 cut(s) 43, 285
TfiI GAWTC 2 cut(s) 4, 10
TscAI CASTG 1 cut(s) 36
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 231
TspRI CASTG 1 cut(s) 36
XbaI TCTAGA 1 cut(s) 160
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.