RLG00000030524

NmrA-like family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
62907864 .. 62908967
1104 bp
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UTR
Exon/CDS
Intron
RLM00000030524

Sequence Viewer

Length: 432 bp
ATGGCTGCAGTTATTATCAATGGAAGACCTTTAACCTCTAATGTAGAAGTTGATGAAACATGGTTTTCTGATCCACTTGTTTGTGAGGAGTTGAAGGTATATGCTCACGAAGTAACAAATGCATATTATCTATCCACTGATGTTAGAGATGTTGCCTCGGCTCATATTCAAGCATTTGAAGTTCCTTCAGCGAGTGGAAGATATTGCTTAGTTGCAAATGTCACCCACATTTACAAGGCTCTGCAGATTTTAGAACAACTTCATCCGACTTTGTGCCCACCTGAAATATGTGAGCATGATATCCCTTCTGCCCCAGAGTATCAAATATACCAGGAAAAAGCAAAAAGTTTGGGAGTTAGTTTCCTTCCGTTGGAAGTAAGTCTGAGGGACACTATTGAATGCCTGAAGGAGAAGGGATTCCTCGAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

144

Amino Acids

16.0

Weight (kDa)

4.73

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 422
AclWI GGATC 1 cut(s) 65
AcuI CTGAAG 2 cut(s) 171, 425
AfiI CCNNNNNNNGG 1 cut(s) 370
AgsI TTSAA 4 cut(s) 94, 170, 179, 398
AjnI CCWGG 1 cut(s) 330
AlwI GGATC 1 cut(s) 65
Ama87I CYCGRG 1 cut(s) 422
ApeKI GCWGC 1 cut(s) 5
Asp700I GAANNNNTTC 2 cut(s) 258, 416
AsuHPI GGTGA 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 422
BaeGI GKGCMC 1 cut(s) 278
BbsI GAAGAC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 332
BfmI CTRYAG 2 cut(s) 6, 242
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 332
BmeT110I CYCGRG 1 cut(s) 422
BmrFI CCNGG 1 cut(s) 332
BpiI GAAGAC 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 370
BseBI CCWGG 1 cut(s) 332
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 370
BseMII CTCAG 1 cut(s) 374
BseRI GAGGAG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 278
BsiHKCI CYCGRG 1 cut(s) 422
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 370
BsmFI GGGAC 1 cut(s) 401
BsmI GAATGC 1 cut(s) 404
BsoBI CYCGRG 1 cut(s) 422
Bsp1286I GDGCHC 1 cut(s) 278
Bsp143I GATC 1 cut(s) 70
BspCNI CTCAG 1 cut(s) 375
BspMAI CTGCAG 2 cut(s) 10, 246
BspPI GGATC 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 332
BstDEI CTNAG 2 cut(s) 208, 383
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstNI CCWGG 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 330
BstSFI CTRYAG 2 cut(s) 6, 242
BstSLI GKGCMC 1 cut(s) 278
BstV2I GAAGAC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 135
CviAII CATG 2 cut(s) 60, 296
CviJI RGCY 4 cut(s) 5, 161, 239, 428
CviKI_1 RGCY 4 cut(s) 5, 161, 239, 428
DdeI CTNAG 2 cut(s) 208, 383
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
Eco32I GATATC 1 cut(s) 301
Eco57I CTGAAG 2 cut(s) 171, 425
Eco88I CYCGRG 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 330
EcoRV GATATC 1 cut(s) 301
EcoT22I ATGCAT 1 cut(s) 124
FaeI CATG 2 cut(s) 63, 299
FaiI YATR 8 cut(s) 61, 100, 102, 124, 165, 289, 297, 328
FaqI GGGAC 1 cut(s) 401
FatI CATG 2 cut(s) 59, 295
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 63, 299
HinfI GANTC 1 cut(s) 417
HphI GGTGA 1 cut(s) 214
Hpy188I TCNGA 3 cut(s) 70, 267, 384
Hpy188III TCNNGA 1 cut(s) 107
HpyAV CCTTC 6 cut(s) 88, 195, 315, 374, 400, 406
HpyCH4V TGCA 4 cut(s) 8, 122, 215, 244
HpyF3I CTNAG 2 cut(s) 208, 383
Hsp92II CATG 2 cut(s) 63, 299
Kzo9I GATC 1 cut(s) 70
LpnPI CCDG 5 cut(s) 294, 317, 327, 344, 416
MaeIII GTNAC 2 cut(s) 112, 220
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 2 cut(s) 36, 210
MhlI GDGCHC 1 cut(s) 278
MmeI TCCRAC 2 cut(s) 290, 351
MnlI CCTC 6 cut(s) 46, 79, 166, 378, 418, 431
Mph1103I ATGCAT 1 cut(s) 124
MroXI GAANNNNTTC 2 cut(s) 258, 416
MseI TTAA 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 332
Mva1269I GAATGC 1 cut(s) 404
MvaI CCWGG 1 cut(s) 332
NdeII GATC 1 cut(s) 70
NlaIII CATG 2 cut(s) 63, 299
NmeAIII GCCGAG 1 cut(s) 137
NmuCI GTSAC 1 cut(s) 220
NsiI ATGCAT 1 cut(s) 124
PaeR7I CTCGAG 1 cut(s) 422
PctI GAATGC 1 cut(s) 404
PdmI GAANNNNTTC 2 cut(s) 258, 416
PfeI GAWTC 1 cut(s) 417
PkrI GCNGC 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 330
PspGI CCWGG 1 cut(s) 330
PspXI VCTCGAGB 1 cut(s) 422
PstI CTGCAG 2 cut(s) 10, 246
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 332
SduI GDGCHC 1 cut(s) 278
SetI ASST 4 cut(s) 31, 38, 99, 283
SfcI CTRYAG 2 cut(s) 6, 242
Sfr274I CTCGAG 1 cut(s) 422
SlaI CTCGAG 1 cut(s) 422
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
StyD4I CCNGG 1 cut(s) 330
TaqI TCGA 1 cut(s) 423
TfiI GAWTC 1 cut(s) 417
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 69, 251
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 1 cut(s) 142
XhoI CTCGAG 1 cut(s) 422
XmnI GAANNNNTTC 2 cut(s) 258, 416
Zsp2I ATGCAT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.