RLG00000029566

NmrA-like family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
40544518 .. 40545018
501 bp
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UTR
Exon/CDS
Intron
RLM00000029566

Sequence Viewer

Length: 375 bp
ATGATTCTCAATCAATTGATTGTTTGTTTCTTATCCTATACAGATATCGACGGAGTAACTAGTGCAAATTATACATCTACTGATGTTAGAGATGTTGCTTCTGCTCATATTCAAGCATTTGAAGTTCCTTCAGTTAGTGGAAGATATTGTTTAGTTGCAAATGTCACCCCCATTCACGAGGCTCTGAAGATTTTAAAGGAACTTCATCCTACTTTGTGCCCAACTGCAATATGTGGGCAGGATATCCCTTCTGCTCCAGAGTATCAAATATCCCAAGAAAAAGCAAAAAGTTTGGGACTTGATTTCCTTCCGTTCGAAGTAAGTCTCAGGGACACTATTGAATGCCTGAAGCAGAAGGGTTTCCTTGAGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

125

Amino Acids

13.62

Weight (kDa)

4.86

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 3 cut(s) 114, 206, 368
AgsI TTSAA 3 cut(s) 113, 122, 341
AhlI ACTAGT 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 329
AoxI GGCC 1 cut(s) 369
Asp700I GAANNNNTTC 1 cut(s) 359
AsuHPI GGTGA 1 cut(s) 157
AsuII TTCGAA 1 cut(s) 315
BaeGI GKGCMC 1 cut(s) 221
BauI CACGAG 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 329
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 240
Bpu14I TTCGAA 1 cut(s) 315
BseGI GGATG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 340
BseSI GKGCMC 1 cut(s) 221
BshFI GGCC 1 cut(s) 371
BslFI GGGAC 2 cut(s) 309, 344
BsmAI GTCTC 1 cut(s) 329
BsmFI GGGAC 2 cut(s) 309, 344
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 1 cut(s) 371
Bsp119I TTCGAA 1 cut(s) 315
Bsp1286I GDGCHC 1 cut(s) 221
BspANI GGCC 1 cut(s) 371
BspCNI CTCAG 1 cut(s) 339
BspT104I TTCGAA 1 cut(s) 315
BssSI CACGAG 1 cut(s) 176
Bst2BI CACGAG 1 cut(s) 176
BstBI TTCGAA 1 cut(s) 315
BstDEI CTNAG 1 cut(s) 326
BstF5I GGATG 1 cut(s) 205
BstMAI GTCTC 1 cut(s) 329
BstSLI GKGCMC 1 cut(s) 221
BsuRI GGCC 1 cut(s) 371
BtsCI GGATG 1 cut(s) 205
CviJI RGCY 2 cut(s) 182, 371
CviKI_1 RGCY 2 cut(s) 182, 371
DdeI CTNAG 1 cut(s) 326
DraI TTTAAA 1 cut(s) 195
Eco147I AGGCCT 1 cut(s) 371
Eco32I GATATC 2 cut(s) 46, 244
Eco57I CTGAAG 3 cut(s) 114, 206, 368
EcoRV GATATC 2 cut(s) 46, 244
FaiI YATR 4 cut(s) 39, 72, 108, 232
FaqI GGGAC 2 cut(s) 309, 344
FokI GGATG 1 cut(s) 192
FspBI CTAG 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 1 cut(s) 371
HinfI GANTC 1 cut(s) 4
HphI GGTGA 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 2 cut(s) 176, 257
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 4 cut(s) 138, 258, 317, 349
HpyCH4V TGCA 3 cut(s) 65, 158, 227
HpyF3I CTNAG 1 cut(s) 326
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 4 cut(s) 224, 270, 313, 359
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 2 cut(s) 55, 163
MboII GAAGA 2 cut(s) 153, 199
MfeI CAATTG 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 221
MluCI AATT 2 cut(s) 14, 67
MnlI CCTC 2 cut(s) 172, 361
MroXI GAANNNNTTC 1 cut(s) 359
MseI TTAA 1 cut(s) 194
MunI CAATTG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 347
NmuCI GTSAC 1 cut(s) 163
NspV TTCGAA 1 cut(s) 315
PceI AGGCCT 1 cut(s) 371
PctI GAATGC 1 cut(s) 347
PdmI GAANNNNTTC 1 cut(s) 359
PfeI GAWTC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 194
SduI GDGCHC 1 cut(s) 221
SfuI TTCGAA 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
SpeI ACTAGT 1 cut(s) 59
Sse9I AATT 2 cut(s) 14, 67
SseBI AGGCCT 1 cut(s) 371
SspMI CTAG 1 cut(s) 60
StuI AGGCCT 1 cut(s) 371
TaqI TCGA 2 cut(s) 48, 315
TasI AATT 2 cut(s) 14, 67
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TseFI GTSAC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 1 cut(s) 194
TspGWI ACGGA 2 cut(s) 66, 300
XmnI GAANNNNTTC 1 cut(s) 359
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.