Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001403.1

Orthogroup ID

OG0016408

Physical Location & Seq

Genomic Coordinates Reverse (-)

87904 .. 88693

Gene Structure 790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001403.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atggtgaccataaatcccgggaatgtgatgggtccactcttgcagccaactcttaatttcagtgtggagatggtgctggatctcaagaaggtaacaagtgcaaattatatatctactaatgttagagatgttgcatcggctcatattcaagcatttgaagttccttcagctagtggaagatattgtttagttgcaaatgtcacccccattcacgaggctctgaagattttaaaggaacttcatcctactttgtgcccacctgacatatgtgagcaagataaccctactgcctatgagtttcaaatatcccaggaaaaagtaaaaagtttgggagtaagtttccttccattggaagtaagtctcagggacactattgaaagcctgaaggagaagggtttcctcgaggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

136

Amino Acids

14.95

Weight (kDa)

5.12

Isoelectric Point (pI)

25.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016408)

Species	Orthologous Gene IDs
malus_domestica	MD02G1303200.v1.1 MD02G1305100.v1.1
pyrus_communis	pycom02g25540 pycom07g01580
rosa_laevigata	RLG00000029566 RLG00000030524 RLG00000030600 RLG00000030603
rosa_multiflora	Rmu_sc0001403.1_g000008 Rmu_sc0001403.1_g000018 Rmu_sc0001403.1_g000020 Rmu_sc0009583.1_g000001
rosa_rugosa	Rorug01G0016300
rosa_samantha	Rh1BG024300 Rh1DG045500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	401
AclWI	GGATC	1 cut(s)	87
AcuI	CTGAAG	3 cut(s)	150, 242, 404
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgsI	TTSAA	4 cut(s)	149, 158, 302, 377
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	1 cut(s)	87
Ama87I	CYCGRG	2 cut(s)	17, 401
ApeKI	GCWGC	1 cut(s)	43
Asp700I	GAANNNNTTC	1 cut(s)	395
AspS9I	GGNCC	1 cut(s)	32
AsuC2I	CCSGG	2 cut(s)	18, 19
AsuHPI	GGTGA	2 cut(s)	16, 193
AvaI	CYCGRG	2 cut(s)	17, 401
AvaII	GGWCC	1 cut(s)	32
BaeGI	GKGCMC	1 cut(s)	257
BarI	GAAGNNNNNNTAC	2 cut(s)	327, 359
BauI	CACGAG	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	2 cut(s)	22, 64
BciT130I	CCWGG	1 cut(s)	311
BcnI	CCSGG	2 cut(s)	18, 19
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	1 cut(s)	171
BisI	GCNGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	45
Bme1390I	CCNGG	3 cut(s)	18, 19, 311
Bme18I	GGWCC	1 cut(s)	32
BmeT110I	CYCGRG	2 cut(s)	17, 401
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	3 cut(s)	18, 19, 311
BmsI	GCATC	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	68
BpuMI	CCSGG	2 cut(s)	18, 19
BsaJI	CCNNGG	2 cut(s)	17, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	2 cut(s)	17, 309
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMII	CTCAG	1 cut(s)	376
BseSI	GKGCMC	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	55
BsiHKCI	CYCGRG	2 cut(s)	17, 401
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	380
BsoBI	CYCGRG	2 cut(s)	17, 401
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp143I	GATC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	375
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	87
BssECI	CCNNGG	2 cut(s)	17, 309
BssMI	GATC	1 cut(s)	79
BssSI	CACGAG	1 cut(s)	212
Bst2BI	CACGAG	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	311
BstDEI	CTNAG	1 cut(s)	362
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	1 cut(s)	79
BstNI	CCWGG	1 cut(s)	311
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	3 cut(s)	16, 17, 309
BstSLI	GKGCMC	1 cut(s)	257
BstV1I	GCAGC	1 cut(s)	55
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	32
Cfr9I	CCCGGG	1 cut(s)	17
CviJI	RGCY	6 cut(s)	46, 140, 170, 218, 381, 407
CviKI_1	RGCY	6 cut(s)	46, 140, 170, 218, 381, 407
DdeI	CTNAG	1 cut(s)	362
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
DraI	TTTAAA	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	32
Eco57I	CTGAAG	3 cut(s)	150, 242, 404
Eco88I	CYCGRG	2 cut(s)	17, 401
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	309
FaiI	YATR	7 cut(s)	11, 108, 110, 144, 266, 268, 294
FaqI	GGGAC	1 cut(s)	380
FauNDI	CATATG	1 cut(s)	266
Fnu4HI	GCNGC	1 cut(s)	44
FokI	GGATG	1 cut(s)	228
Fsp4HI	GCNGC	1 cut(s)	44
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	1 cut(s)	44
HapII	CCGG	1 cut(s)	18
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	2 cut(s)	16, 193
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	2 cut(s)	85, 212
Hpy8I	GTNNAC	1 cut(s)	35
HpyAV	CCTTC	5 cut(s)	82, 174, 353, 379, 385
HpyCH4V	TGCA	4 cut(s)	43, 101, 134, 194
HpyF3I	CTNAG	1 cut(s)	362
Kzo9I	GATC	1 cut(s)	79
LpnPI	CCDG	7 cut(s)	31, 62, 273, 296, 323, 349, 395
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	1 cut(s)	143
MaeI	CTAG	1 cut(s)	171
MaeIII	GTNAC	3 cut(s)	4, 91, 199
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	2 cut(s)	189, 235
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	257
MluCI	AATT	2 cut(s)	55, 103
MnlI	CCTC	3 cut(s)	208, 397, 410
MroXI	GAANNNNTTC	1 cut(s)	395
MseI	TTAA	2 cut(s)	54, 230
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	3 cut(s)	18, 19, 311
MvaI	CCWGG	1 cut(s)	311
NciI	CCSGG	2 cut(s)	18, 19
NdeI	CATATG	1 cut(s)	266
NdeII	GATC	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	2 cut(s)	4, 199
PaeR7I	CTCGAG	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	395
PkrI	GCNGC	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	309
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	32
PspXI	VCTCGAGB	1 cut(s)	401
PsuI	RGATCY	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	54, 230
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	1 cut(s)	32
ScrFI	CCNGG	3 cut(s)	18, 19, 311
SduI	GDGCHC	1 cut(s)	257
SetI	ASST	3 cut(s)	93, 172, 262
SfaNI	GCATC	1 cut(s)	143
Sfr274I	CTCGAG	1 cut(s)	401
SinI	GGWCC	1 cut(s)	32
SlaI	CTCGAG	1 cut(s)	401
SmaI	CCCGGG	1 cut(s)	19
SmlI	CTYRAG	2 cut(s)	83, 401
SmoI	CTYRAG	2 cut(s)	83, 401
Sse9I	AATT	2 cut(s)	55, 103
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	3 cut(s)	16, 17, 309
TaqI	TCGA	1 cut(s)	402
TasI	AATT	2 cut(s)	55, 103
Tru1I	TTAA	2 cut(s)	54, 230
Tru9I	TTAA	2 cut(s)	54, 230
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	2 cut(s)	4, 199
TseI	GCWGC	1 cut(s)	43
Tsp45I	GTSAC	2 cut(s)	4, 199
TspDTI	ATGAA	1 cut(s)	230
TspMI	CCCGGG	1 cut(s)	17
TspRI	CASTG	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	32
XhoI	CTCGAG	1 cut(s)	401
XmaI	CCCGGG	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.