Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0016408

Physical Location & Seq

Genomic Coordinates Forward (+)

64339510 .. 64341028

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030603

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAGCGGAGAAAGTAAGGTTGTGTGTGTTACAGGAGCTTCTAGTTTCATAGCTTCATGGCTGGTGAAGCTCTTGTTACAGCGAGGTTATGTCGTCAAAGCCACCGAATGGTATTTTCTTTCGAAAACTTTAGCAGAGGAGGCTGCTTGGAAATTTGCTAAGGAAAACGGGATCGACATGGTGACCATAAATCCCTCGTATGTAATGGGTCCATTCTTGCAGCCAACTCTTAATTTCAGTGTGGAGATGGTTCTGGATCTCAAGAAGGATGTCAATGGAGTTAACAATGCAAATTATACATCTACTGATGTTAGAGATGTTGCATCGGCTCATATTCAAGCATTTGAAATTCCTTCAGCTAGTGGAAGATATTGTTTAGTTGCAAATGTCACCCCCATTCACGAGGCTCTGAAGATTTTAAAGGAACTTCATCCTACTTTGTGCCCACCTGAAATATGTGAGCATGATATCTCTTCTGCCCCAGGGTATCAAATATCCCAGGAAAAAGCAAAAAGTTTGGGAGTTAGTTTCCTTCCGTTGGAAGTCAGTCTCAGGGACACTACTGAAAGCCTGAAGGAGAAGGGTTTCCTCAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

200

Amino Acids

21.87

Weight (kDa)

5.83

Isoelectric Point (pI)

27.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016408)

Species	Orthologous Gene IDs
malus_domestica	MD02G1303200.v1.1 MD02G1305100.v1.1
pyrus_communis	pycom02g25540 pycom07g01580
rosa_laevigata	RLG00000029566 RLG00000030524 RLG00000030600 RLG00000030603
rosa_multiflora	Rmu_sc0001403.1_g000008 Rmu_sc0001403.1_g000018 Rmu_sc0001403.1_g000020 Rmu_sc0009583.1_g000001
rosa_rugosa	Rorug01G0016300
rosa_samantha	Rh1BG024300 Rh1DG045500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	108
AccBSI	CCGCTC	1 cut(s)	6
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	2 cut(s)	179, 264
AcsI	RAATTY	2 cut(s)	152, 348
AcuI	CTGAAG	3 cut(s)	339, 431, 593
AfiI	CCNNNNNNNGG	2 cut(s)	108, 538
AgsI	TTSAA	2 cut(s)	338, 347
AjnI	CCWGG	2 cut(s)	481, 498
AluBI	AGCT	4 cut(s)	38, 53, 70, 359
AluI	AGCT	4 cut(s)	38, 53, 70, 359
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	2 cut(s)	179, 264
ApeKI	GCWGC	2 cut(s)	143, 220
ApoI	RAATTY	2 cut(s)	152, 348
Asp700I	GAANNNNTTC	1 cut(s)	584
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	3 cut(s)	76, 193, 382
AsuII	TTCGAA	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	446
BauI	CACGAG	1 cut(s)	401
BbvI	GCAGC	2 cut(s)	130, 232
BccI	CCATC	1 cut(s)	241
BciT130I	CCWGG	2 cut(s)	483, 500
BcoDI	GTCTC	1 cut(s)	554
BfaI	CTAG	2 cut(s)	42, 360
BisI	GCNGC	2 cut(s)	144, 221
BlsI	GCNGC	2 cut(s)	145, 222
Bme1390I	CCNGG	2 cut(s)	483, 500
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	2 cut(s)	483, 500
BmsI	GCATC	1 cut(s)	332
Bpu10I	CCTNAGC	1 cut(s)	159
Bpu14I	TTCGAA	1 cut(s)	122
BpuEI	CTTGAG	2 cut(s)	245, 575
BsaJI	CCNNGG	3 cut(s)	481, 482, 498
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 538
BseBI	CCWGG	2 cut(s)	483, 500
BseDI	CCNNGG	3 cut(s)	481, 482, 498
BseGI	GGATG	2 cut(s)	274, 430
BseLI	CCNNNNNNNGG	2 cut(s)	108, 538
BseMII	CTCAG	1 cut(s)	565
BseRI	GAGGAG	1 cut(s)	152
BseSI	GKGCMC	1 cut(s)	446
BseXI	GCAGC	2 cut(s)	130, 232
BslFI	GGGAC	1 cut(s)	569
BslI	CCNNNNNNNGG	2 cut(s)	108, 538
BsmAI	GTCTC	1 cut(s)	554
BsmFI	GGGAC	1 cut(s)	569
Bsp119I	TTCGAA	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp143I	GATC	2 cut(s)	171, 256
BspACI	CCGC	1 cut(s)	6
BspCNI	CTCAG	1 cut(s)	564
BspLI	GGNNCC	1 cut(s)	210
BspPI	GGATC	2 cut(s)	179, 264
BspT104I	TTCGAA	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	6
BssECI	CCNNGG	3 cut(s)	481, 482, 498
BssMI	GATC	2 cut(s)	171, 256
BssSI	CACGAG	1 cut(s)	401
Bst2BI	CACGAG	1 cut(s)	401
Bst2UI	CCWGG	2 cut(s)	483, 500
Bst6I	CTCTTC	1 cut(s)	478
BstBI	TTCGAA	1 cut(s)	122
BstDEI	CTNAG	2 cut(s)	159, 551
BstEII	GGTNACC	1 cut(s)	181
BstF5I	GGATG	2 cut(s)	274, 430
BstKTI	GATC	2 cut(s)	174, 259
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	2 cut(s)	171, 256
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 140
BstNI	CCWGG	2 cut(s)	483, 500
BstPI	GGTNACC	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	481, 498
BstSLI	GKGCMC	1 cut(s)	446
BstV1I	GCAGC	2 cut(s)	130, 232
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	274, 430
BtsIMutI	CAGTG	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	209
CviAII	CATG	3 cut(s)	57, 178, 464
DdeI	CTNAG	2 cut(s)	159, 551
DpnI	GATC	2 cut(s)	173, 258
DpnII	GATC	2 cut(s)	171, 256
DraI	TTTAAA	1 cut(s)	420
Eam1104I	CTCTTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	478
Eco32I	GATATC	1 cut(s)	469
Eco47I	GGWCC	1 cut(s)	209
Eco57I	CTGAAG	3 cut(s)	339, 431, 593
Eco91I	GGTNACC	1 cut(s)	181
EcoO65I	GGTNACC	1 cut(s)	181
EcoRII	CCWGG	2 cut(s)	481, 498
EcoRV	GATATC	1 cut(s)	469
FaeI	CATG	3 cut(s)	60, 181, 467
FaqI	GGGAC	1 cut(s)	569
FatI	CATG	3 cut(s)	56, 177, 463
Fnu4HI	GCNGC	2 cut(s)	144, 221
FokI	GGATG	2 cut(s)	281, 417
Fsp4HI	GCNGC	2 cut(s)	144, 221
FspBI	CTAG	2 cut(s)	42, 360
GluI	GCNGC	2 cut(s)	144, 221
Hin1II	CATG	3 cut(s)	60, 181, 467
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HpaI	GTTAAC	1 cut(s)	283
HphI	GGTGA	3 cut(s)	76, 193, 382
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	411
Hpy188III	TCNNGA	3 cut(s)	254, 262, 401
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	5 cut(s)	259, 363, 542, 568, 574
HpyCH4V	TGCA	4 cut(s)	220, 290, 323, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 140
HpyF3I	CTNAG	2 cut(s)	159, 551
Hsp92II	CATG	3 cut(s)	60, 181, 467
KspAI	GTTAAC	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	171, 256
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	2 cut(s)	130, 232
LweI	GCATC	1 cut(s)	332
MaeI	CTAG	2 cut(s)	42, 360
MaeIII	GTNAC	4 cut(s)	28, 75, 181, 388
MalI	GATC	2 cut(s)	173, 258
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	2 cut(s)	171, 256
MboII	GAAGA	3 cut(s)	378, 424, 465
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	446
MluCI	AATT	4 cut(s)	152, 232, 292, 348
MmeI	TCCRAC	1 cut(s)	519
MnlI	CCTC	6 cut(s)	77, 130, 133, 205, 397, 599
MroXI	GAANNNNTTC	1 cut(s)	584
MseI	TTAA	3 cut(s)	231, 282, 419
MspR9I	CCNGG	2 cut(s)	483, 500
MvaI	CCWGG	2 cut(s)	483, 500
MwoI	GCNNNNNNNGC	2 cut(s)	67, 140
NdeII	GATC	2 cut(s)	171, 256
NlaIII	CATG	3 cut(s)	60, 181, 467
NlaIV	GGNNCC	1 cut(s)	210
NmuCI	GTSAC	2 cut(s)	181, 388
NspV	TTCGAA	1 cut(s)	122
PasI	CCCWGGG	1 cut(s)	482
PdmI	GAANNNNTTC	1 cut(s)	584
PflMI	CCANNNNNTGG	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	145, 222
Psp6I	CCWGG	2 cut(s)	481, 498
PspEI	GGTNACC	1 cut(s)	181
PspGI	CCWGG	2 cut(s)	481, 498
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	256
SaqAI	TTAA	3 cut(s)	231, 282, 419
SatI	GCNGC	2 cut(s)	144, 221
Sau3AI	GATC	2 cut(s)	171, 256
Sau96I	GGNCC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	483, 500
SduI	GDGCHC	1 cut(s)	446
SetI	ASST	7 cut(s)	21, 40, 55, 72, 88, 361, 451
SfaNI	GCATC	1 cut(s)	332
SfuI	TTCGAA	1 cut(s)	122
SinI	GGWCC	1 cut(s)	209
SmlI	CTYRAG	2 cut(s)	260, 590
SmoI	CTYRAG	2 cut(s)	260, 590
Sse9I	AATT	4 cut(s)	152, 232, 292, 348
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	2 cut(s)	42, 360
StyD4I	CCNGG	2 cut(s)	481, 498
TaqI	TCGA	2 cut(s)	122, 174
TasI	AATT	4 cut(s)	152, 232, 292, 348
Tru1I	TTAA	3 cut(s)	231, 282, 419
Tru9I	TTAA	3 cut(s)	231, 282, 419
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	2 cut(s)	181, 388
TseI	GCWGC	2 cut(s)	143, 220
Tsp45I	GTSAC	2 cut(s)	181, 388
TspDTI	ATGAA	3 cut(s)	37, 45, 419
TspGWI	ACGGA	1 cut(s)	525
TspRI	CASTG	1 cut(s)	244
Van91I	CCANNNNNTGG	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	2 cut(s)	152, 348
XmnI	GAANNNNTTC	1 cut(s)	584
XspI	CTAG	2 cut(s)	42, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.