Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003179

Physical Location & Seq

Genomic Coordinates Reverse (-)

24093927 .. 24097065

Gene Structure 3139 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAATGTTAATGGACATATGGAAATGCATTACCTGGACACGGGCTATCCTTACCCGCCTACTGAAGGCTTCATGGGTTTCTTTGACGGTCTTGCTAATGTACCGATGAATTATGATCACACCATGCCAATGCATGATCAGGAAACTGCGTACTGGTCAATGAATATGAATTTATACAAGTTTGTACCATCTGGTCCGGGGAGTACTTCTTATTACGGTACATATGAGGTAAATGATCATTTACCAAGAATGGACGTCAGCAGGACGACTTGGGAATACCCTACAATGACAAATCCAGAAGAGCCTGCAACCTCCGACTCACAGCCAGAAGAAGACGCTGTCATGGAAGCTCAAGCTGTGCCTGAAGAATGTATTCAGAATCAGCAAAATACAAATACTTCTGAGGTTGCATGGCAAGAGGATATTGATCCTGATACCATGACCTATGAGGAATTACTTGACTTGGGTGAGGCAGTTGGCACTCAAAGCCGAGGTCTCTCTGACGAACTTATTAGTTTGCTTCCATCGTCAAAATACAAGTGTGGAAACTTCTTTTTAAGGAAAAAATCCGGAGAGAGGTGTGTGATTTGCCAGATGCAGTATAAAAGAGGAGATCGACAAATCACATTGCCATGCAAACATGTCTACCATAGCGAATGCATCAGCAAATGGCTCGGTATCAACAAGGTATGCCCAGTTTGCAACCTCGAGGTTTTCGGTGAGGAGTCAAGGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

246

Amino Acids

28.04

Weight (kDa)

4.62

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	188 - 235	7.1e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	193 - 235	6.1e-14	Ring finger domain
zf-C3HC4_2	PF13923	193 - 234	1.6e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	194 - 221	7.2e-08	RING-like zinc finger
zf-C3HC4	PF00097	194 - 234	1.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	194 - 232	2.2e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63530 AT3G63530
fragaria_vesca	FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970
malus_domestica	MD02G1313100.v1.1 MD07G1009300.v1.1
prunus_persica	Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1
pyrus_communis	pycom02g26270 pycom07g00780 pycom07g00830
rosa_chinensis	RchiOBHm_Chr1g0315871
rosa_laevigata	RLG00000030727
rosa_multiflora	Rmu_ssc0000154.1_g000014
rosa_roxburghii	Rroxscaffold_4G00331360
rosa_rugosa	Rorug01G0006300 Rorug01G0006400 Rorug01G0006500 Rorug01G0006600 Rorug01G0006700
rosa_samantha	Rh1AG017400 Rh1BG009900 Rh1CG014700 Rh1DG010300
rosa_wichuraiana	Rw1G001030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
AbsI	CCTCGAGG	1 cut(s)	707
AccI	GTMKAC	1 cut(s)	645
AccIII	TCCGGA	1 cut(s)	569
AciI	CCGC	1 cut(s)	56
AclWI	GGATC	1 cut(s)	422
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	2 cut(s)	84, 384
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	5 cut(s)	102, 152, 186, 205, 220
AfiI	CCNNNNNNNGG	3 cut(s)	40, 65, 576
AflIII	ACRYGT	1 cut(s)	640
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	2 cut(s)	350, 356
AluI	AGCT	2 cut(s)	350, 356
Alw26I	GTCTC	1 cut(s)	500
AlwI	GGATC	1 cut(s)	422
Ama87I	CYCGRG	1 cut(s)	707
Aor13HI	TCCGGA	1 cut(s)	569
ApoI	RAATTY	1 cut(s)	169
ArsI	GACNNNNNNTTYG	2 cut(s)	478, 510
Asp700I	GAANNNNTTC	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	194
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	2 cut(s)	479, 731
AvaI	CYCGRG	1 cut(s)	707
AvaII	GGWCC	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	339
BccI	CCATC	2 cut(s)	196, 532
BcgI	CGANNNNNNTGC	2 cut(s)	655, 689
BciT130I	CCWGG	1 cut(s)	35
BclI	TGATCA	3 cut(s)	115, 136, 235
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	500
BfaI	CTAG	1 cut(s)	736
BmcAI	AGTACT	1 cut(s)	205
Bme1390I	CCNGG	2 cut(s)	35, 198
Bme18I	GGWCC	1 cut(s)	194
BmeT110I	CYCGRG	1 cut(s)	707
BmgT120I	GGNCC	1 cut(s)	194
BmrFI	CCNGG	2 cut(s)	35, 198
BmrI	ACTGGG	1 cut(s)	689
BmsI	GCATC	2 cut(s)	585, 669
BmuI	ACTGGG	1 cut(s)	689
BpiI	GAAGAC	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	198
BsaBI	GATNNNNATC	1 cut(s)	426
BsaHI	GRCGYC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	2 cut(s)	197, 490
BsaWI	WCCGGW	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 65, 576
Bse1I	ACTGG	2 cut(s)	158, 695
Bse3DI	GCAATG	1 cut(s)	626
Bse8I	GATNNNNATC	1 cut(s)	426
BseAI	TCCGGA	1 cut(s)	569
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	2 cut(s)	197, 490
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	3 cut(s)	40, 65, 576
BseMI	GCAATG	1 cut(s)	626
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	158, 695
BseRI	GAGGAG	2 cut(s)	624, 737
BsiHKCI	CYCGRG	1 cut(s)	707
BsiSI	CCGG	2 cut(s)	197, 570
BslI	CCNNNNNNNGG	3 cut(s)	40, 65, 576
BsmAI	GTCTC	1 cut(s)	500
BsmI	GAATGC	1 cut(s)	662
Bso31I	GGTCTC	1 cut(s)	500
BsoBI	CYCGRG	1 cut(s)	707
Bsp13I	TCCGGA	1 cut(s)	569
Bsp143I	GATC	5 cut(s)	115, 136, 235, 427, 613
BspACI	CCGC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	394
BspEI	TCCGGA	1 cut(s)	569
BspPI	GGATC	1 cut(s)	422
BspQI	GCTCTTC	1 cut(s)	294
BspTNI	GGTCTC	1 cut(s)	500
BsrDI	GCAATG	1 cut(s)	626
BsrI	ACTGG	2 cut(s)	158, 695
BssECI	CCNNGG	2 cut(s)	197, 490
BssMI	GATC	5 cut(s)	115, 136, 235, 427, 613
BssNI	GRCGYC	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	2 cut(s)	89, 218
Bst6I	CTCTTC	1 cut(s)	294
BstACI	GRCGYC	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	1 cut(s)	402
BstENI	CCTNNNNNAGG	1 cut(s)	63
BstKTI	GATC	5 cut(s)	118, 139, 238, 430, 616
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	5 cut(s)	115, 136, 235, 427, 613
BstMWI	GCNNNNNNNGC	2 cut(s)	486, 699
BstNI	CCWGG	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	644
BstSCI	CCNGG	2 cut(s)	33, 196
BstV2I	GAAGAC	1 cut(s)	339
Cac8I	GCNNGC	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	194
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	5 cut(s)	101, 151, 185, 204, 219
CviAII	CATG	8 cut(s)	73, 124, 134, 343, 411, 439, 633, 641
CviJI	RGCY	8 cut(s)	45, 69, 304, 325, 350, 356, 489, 673
CviKI_1	RGCY	8 cut(s)	45, 69, 304, 325, 350, 356, 489, 673
CviQI	GTAC	5 cut(s)	101, 151, 185, 204, 219
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	5 cut(s)	117, 138, 237, 429, 615
DpnII	GATC	5 cut(s)	115, 136, 235, 427, 613
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	500
Eco47I	GGWCC	1 cut(s)	194
Eco57I	CTGAAG	2 cut(s)	84, 384
Eco88I	CYCGRG	1 cut(s)	707
EcoNI	CCTNNNNNAGG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	33
EcoT22I	ATGCAT	3 cut(s)	30, 135, 662
FaeI	CATG	8 cut(s)	76, 127, 137, 346, 414, 442, 636, 644
FatI	CATG	8 cut(s)	72, 123, 133, 342, 410, 438, 632, 640
FauI	CCCGC	1 cut(s)	63
FauNDI	CATATG	2 cut(s)	18, 223
FbaI	TGATCA	3 cut(s)	115, 136, 235
FblI	GTMKAC	1 cut(s)	645
FspBI	CTAG	1 cut(s)	736
HapII	CCGG	2 cut(s)	197, 570
HgaI	GACGC	1 cut(s)	344
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	8 cut(s)	76, 127, 137, 346, 414, 442, 636, 644
HinfI	GANTC	3 cut(s)	317, 379, 725
HpaII	CCGG	2 cut(s)	197, 570
HphI	GGTGA	2 cut(s)	479, 731
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	4 cut(s)	316, 378, 403, 502
Hpy188III	TCNNGA	4 cut(s)	140, 296, 431, 570
Hpy8I	GTNNAC	1 cut(s)	646
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	2 cut(s)	89, 218
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	8 cut(s)	28, 133, 308, 410, 598, 636, 660, 702
HpyF10VI	GCNNNNNNNGC	2 cut(s)	486, 699
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	8 cut(s)	76, 127, 137, 346, 414, 442, 636, 644
Kpn2I	TCCGGA	1 cut(s)	569
Ksp22I	TGATCA	3 cut(s)	115, 136, 235
Kzo9I	GATC	5 cut(s)	115, 136, 235, 427, 613
LguI	GCTCTTC	1 cut(s)	294
LweI	GCATC	2 cut(s)	585, 669
MaeI	CTAG	1 cut(s)	736
MaeII	ACGT	1 cut(s)	255
MalI	GATC	5 cut(s)	117, 138, 237, 429, 615
MboI	GATC	5 cut(s)	115, 136, 235, 427, 613
MboII	GAAGA	4 cut(s)	311, 341, 344, 377
MluCI	AATT	3 cut(s)	109, 169, 452
MlyI	GAGTC	2 cut(s)	311, 734
MmeI	TCCRAC	1 cut(s)	339
Mph1103I	ATGCAT	3 cut(s)	30, 135, 662
MroI	TCCGGA	1 cut(s)	569
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	2 cut(s)	9, 557
MslI	CAYNNNNRTG	2 cut(s)	128, 631
MspI	CCGG	2 cut(s)	197, 570
MspR9I	CCNGG	2 cut(s)	35, 198
Mva1269I	GAATGC	1 cut(s)	662
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	486, 699
NciI	CCSGG	1 cut(s)	198
NdeI	CATATG	2 cut(s)	18, 223
NdeII	GATC	5 cut(s)	115, 136, 235, 427, 613
NlaIII	CATG	8 cut(s)	76, 127, 137, 346, 414, 442, 636, 644
NmeAIII	GCCGAG	1 cut(s)	515
NsiI	ATGCAT	3 cut(s)	30, 135, 662
NspI	RCATGY	1 cut(s)	644
PaeR7I	CTCGAG	1 cut(s)	707
PciI	ACATGT	1 cut(s)	640
PciSI	GCTCTTC	1 cut(s)	294
PctI	GAATGC	1 cut(s)	662
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	379
PflFI	GACNNNGTC	1 cut(s)	338
PleI	GAGTC	2 cut(s)	311, 733
PpsI	GAGTC	2 cut(s)	311, 733
PscI	ACATGT	1 cut(s)	640
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	194
PspXI	VCTCGAGB	1 cut(s)	707
PsyI	GACNNNGTC	1 cut(s)	338
RsaI	GTAC	5 cut(s)	102, 152, 186, 205, 220
RsaNI	GTAC	5 cut(s)	101, 151, 185, 204, 219
RseI	CAYNNNNRTG	2 cut(s)	128, 631
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	2 cut(s)	9, 557
Sau3AI	GATC	5 cut(s)	115, 136, 235, 427, 613
Sau96I	GGNCC	1 cut(s)	194
ScaI	AGTACT	1 cut(s)	205
SchI	GAGTC	2 cut(s)	311, 734
ScrFI	CCNGG	2 cut(s)	35, 198
SfaNI	GCATC	2 cut(s)	585, 669
Sfr274I	CTCGAG	1 cut(s)	707
SinI	GGWCC	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	707
SmiMI	CAYNNNNRTG	2 cut(s)	128, 631
SmlI	CTYRAG	2 cut(s)	351, 707
SmoI	CTYRAG	2 cut(s)	351, 707
Sse9I	AATT	3 cut(s)	109, 169, 452
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	1 cut(s)	736
StyD4I	CCNGG	2 cut(s)	33, 196
TaaI	ACNGT	2 cut(s)	89, 218
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	616, 708
TasI	AATT	3 cut(s)	109, 169, 452
TatI	WGTACW	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	2 cut(s)	9, 557
Tru9I	TTAA	2 cut(s)	9, 557
TspDTI	ATGAA	5 cut(s)	17, 61, 122, 176, 182
Tth111I	GACNNNGTC	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	194
XagI	CCTNNNNNAGG	1 cut(s)	63
XapI	RAATTY	1 cut(s)	169
XceI	RCATGY	1 cut(s)	644
XhoI	CTCGAG	1 cut(s)	707
XmiI	GTMKAC	1 cut(s)	645
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	1 cut(s)	736
ZraI	GACGTC	1 cut(s)	256
ZrmI	AGTACT	1 cut(s)	205
Zsp2I	ATGCAT	3 cut(s)	30, 135, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.