Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004458

Physical Location & Seq

Genomic Coordinates Reverse (-)

24279947 .. 24281494

Gene Structure 1548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAATGCAACCTGGTCGATCTTTTTGTTACCATTAAGGTTAGGGAAGACCCAGTTTTCCGTAGAGAAGGTGCAGACATTCATGTAGATGCTGTTCTCAGTATAACTCAGGCAATTTTGGGAGGAACTATCCAGGTCCCAACTCTCACAGGCGATGTTGTATTAAAGGTTCGTGCTGGCACCCAACCTGGGCAGAAGGTAGTCTTGAAGAAGAAAGGGATAAAGACAAGGAACTCTTATACATTTGGTGATCAATACGTGCATTTCAATGTCAGCATTCCAGCGAATCTGACTCAAAGGCAACGCGAATTAATTGAAGAGTTTGCCAAAGAAGAACAGGGGGAATATGGTAAGCATGCAGCCGCGGGTGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000740 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006457 GO:0006458 GO:0006996 GO:0006997 GO:0007275 GO:0007349 GO:0008150 GO:0008219 GO:0009553 GO:0009558 GO:0009559 GO:0009561 GO:0009653 GO:0009856 GO:0009987 GO:0010197 GO:0010198 GO:0010623 GO:0012501 GO:0016043 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048229 GO:0048284 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051084 GO:0051085 GO:0051704 GO:0061024 GO:0061025 GO:0061077 GO:0071840 GO:0090174

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

126

Amino Acids

13.77

Weight (kDa)

7.88

Isoelectric Point (pI)

23.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ_C	PF01556	7 - 94	6e-29	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48030
fragaria_vesca	FvH4_2g18630 FvH4_2g18630 FvH4_7g00600 FvH4_7g00600 FvH4_7g00600
malus_domestica	MD02G1316500.v1.1
prunus_persica	Prupe.2G007700_v2.0.a1
pyrus_communis	pycom02g26520
rosa_chinensis	RchiOBHm_Chr1g0314781 RchiOBHm_Chr6g0284191
rosa_laevigata	RLG00000012758 RLG00000030764
rosa_multiflora	Rmu_sc0002833.1_g000038 Rmu_sc0003778.1_g000002
rosa_roxburghii	Rroxscaffold_4G00331880 Rroxscaffold_7G00184800
rosa_rugosa	Rorug01G0001800 Rorug01G0001800 Rorug06G0161800
rosa_samantha	Rh1AG012700 Rh1BG004300 Rh1CG011200 Rh1DG006000 Rh6AG274600 Rh6BG275100 Rh6CG064000 Rh6CG276800 Rh6DG061100 Rh6DG269400
rosa_wichuraiana	Rw1G000530 Rw6G023620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AccII	CGCG	2 cut(s)	306, 365
AciI	CCGC	2 cut(s)	363, 365
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgsI	TTSAA	3 cut(s)	208, 268, 317
AjnI	CCWGG	3 cut(s)	12, 132, 187
ApeKI	GCWGC	1 cut(s)	359
AseI	ATTAAT	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	371
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	3 cut(s)	14, 134, 189
BclI	TGATCA	1 cut(s)	250
BisI	GCNGC	2 cut(s)	360, 363
BlsI	GCNGC	2 cut(s)	361, 364
Bme1390I	CCNGG	3 cut(s)	14, 134, 189
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	2 cut(s)	138, 181
BmrFI	CCNGG	3 cut(s)	14, 134, 189
BmrI	ACTGGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	79
BmuI	ACTGGG	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	54
BsaAI	YACGTR	1 cut(s)	259
BsaJI	CCNNGG	2 cut(s)	188, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	53
BseBI	CCWGG	3 cut(s)	14, 134, 189
BseDI	CCNNGG	2 cut(s)	188, 363
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMII	CTCAG	2 cut(s)	112, 122
BseNI	ACTGG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	371
BsgI	GTGCAG	1 cut(s)	93
Bsh1236I	CGCG	2 cut(s)	306, 365
BshNI	GGYRCC	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	122
BsmI	GAATGC	2 cut(s)	11, 276
Bsp143I	GATC	2 cut(s)	19, 250
BspACI	CCGC	2 cut(s)	363, 365
BspCNI	CTCAG	2 cut(s)	111, 121
BspFNI	CGCG	2 cut(s)	306, 365
BspLI	GGNNCC	2 cut(s)	138, 181
BspT107I	GGYRCC	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	188, 363
BssMI	GATC	2 cut(s)	19, 250
Bst2UI	CCWGG	3 cut(s)	14, 134, 189
Bst6I	CTCTTC	1 cut(s)	312
BstBAI	YACGTR	1 cut(s)	259
BstC8I	GCNNGC	2 cut(s)	178, 357
BstDEI	CTNAG	2 cut(s)	98, 108
BstDSI	CCRYGG	1 cut(s)	363
BstFNI	CGCG	2 cut(s)	306, 365
BstKTI	GATC	2 cut(s)	22, 253
BstMBI	GATC	2 cut(s)	19, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNI	CCWGG	3 cut(s)	14, 134, 189
BstNSI	RCATGY	1 cut(s)	359
BstSCI	CCNGG	3 cut(s)	12, 132, 187
BstUI	CGCG	2 cut(s)	306, 365
BstV1I	GCAGC	1 cut(s)	371
BstV2I	GAAGAC	1 cut(s)	54
BtgI	CCRYGG	1 cut(s)	363
BtgZI	GCGATG	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	178, 357
Cfr13I	GGNCC	1 cut(s)	136
Cfr42I	CCGCGG	1 cut(s)	366
CsiI	ACCWGGT	1 cut(s)	12
CviAII	CATG	2 cut(s)	83, 356
CviJI	RGCY	1 cut(s)	362
CviKI_1	RGCY	1 cut(s)	362
DdeI	CTNAG	2 cut(s)	98, 108
DpnI	GATC	2 cut(s)	21, 252
DpnII	GATC	2 cut(s)	19, 250
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	136
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	3 cut(s)	12, 132, 187
FaeI	CATG	2 cut(s)	86, 359
FaiI	YATR	5 cut(s)	84, 104, 240, 348, 357
FalI	AAGNNNNNCTT	4 cut(s)	188, 220, 220, 252
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	2 cut(s)	82, 355
FauI	CCCGC	1 cut(s)	358
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	2 cut(s)	360, 363
Fsp4HI	GCNGC	2 cut(s)	360, 363
GluI	GCNGC	2 cut(s)	360, 363
Hin1II	CATG	2 cut(s)	86, 359
HinfI	GANTC	2 cut(s)	286, 292
HphI	GGTGA	1 cut(s)	260
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	2 cut(s)	205, 375
HpyAV	CCTTC	2 cut(s)	62, 190
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	5 cut(s)	9, 74, 262, 359, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	2 cut(s)	98, 108
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	86, 359
Ksp22I	TGATCA	1 cut(s)	250
KspI	CCGCGG	1 cut(s)	366
Kzo9I	GATC	2 cut(s)	19, 250
Lsp1109I	GCAGC	1 cut(s)	371
LweI	GCATC	1 cut(s)	79
MabI	ACCWGGT	1 cut(s)	12
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	2 cut(s)	21, 252
MboI	GATC	2 cut(s)	19, 250
MboII	GAAGA	5 cut(s)	59, 220, 223, 329, 344
MluCI	AATT	3 cut(s)	114, 308, 312
MlyI	GAGTC	1 cut(s)	286
MnlI	CCTC	1 cut(s)	116
MseI	TTAA	3 cut(s)	36, 164, 311
MslI	CAYNNNNRTG	2 cut(s)	87, 267
MspA1I	CMGCKG	1 cut(s)	365
MspR9I	CCNGG	3 cut(s)	14, 134, 189
Mva1269I	GAATGC	2 cut(s)	11, 276
MvaI	CCWGG	3 cut(s)	14, 134, 189
MvnI	CGCG	2 cut(s)	306, 365
MwoI	GCNNNNNNNGC	1 cut(s)	368
NdeII	GATC	2 cut(s)	19, 250
NlaIII	CATG	2 cut(s)	86, 359
NlaIV	GGNNCC	2 cut(s)	138, 181
NspI	RCATGY	1 cut(s)	359
PaeI	GCATGC	1 cut(s)	359
PctI	GAATGC	2 cut(s)	11, 276
PfeI	GAWTC	1 cut(s)	286
PkrI	GCNGC	2 cut(s)	361, 364
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Ppu21I	YACGTR	1 cut(s)	259
PpuMI	RGGWCCY	1 cut(s)	136
PshBI	ATTAAT	1 cut(s)	311
Psp5II	RGGWCCY	1 cut(s)	136
Psp6I	CCWGG	3 cut(s)	12, 132, 187
PspGI	CCWGG	3 cut(s)	12, 132, 187
PspN4I	GGNNCC	2 cut(s)	138, 181
PspPI	GGNCC	1 cut(s)	136
PspPPI	RGGWCCY	1 cut(s)	136
PsrI	GAACNNNNNNTAC	4 cut(s)	78, 110, 153, 185
RseI	CAYNNNNRTG	2 cut(s)	87, 267
SacII	CCGCGG	1 cut(s)	366
SaqAI	TTAA	3 cut(s)	36, 164, 311
SatI	GCNGC	2 cut(s)	360, 363
Sau3AI	GATC	2 cut(s)	19, 250
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	3 cut(s)	14, 134, 189
SetI	ASST	8 cut(s)	15, 42, 73, 138, 171, 190, 201, 261
SexAI	ACCWGGT	1 cut(s)	12
SfaNI	GCATC	1 cut(s)	79
Sfr303I	CCGCGG	1 cut(s)	366
SgrBI	CCGCGG	1 cut(s)	366
SinI	GGWCC	1 cut(s)	136
SmiMI	CAYNNNNRTG	2 cut(s)	87, 267
SphI	GCATGC	1 cut(s)	359
Sse9I	AATT	3 cut(s)	114, 308, 312
SsiI	CCGC	2 cut(s)	363, 365
StyD4I	CCNGG	3 cut(s)	12, 132, 187
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	18
TasI	AATT	3 cut(s)	114, 308, 312
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	3 cut(s)	36, 164, 311
Tru9I	TTAA	3 cut(s)	36, 164, 311
TseI	GCWGC	1 cut(s)	359
TspDTI	ATGAA	1 cut(s)	71
TspGWI	ACGGA	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	136
VspI	ATTAAT	1 cut(s)	311
XceI	RCATGY	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.