Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005345

Physical Location & Seq

Genomic Coordinates Reverse (-)

24483492 .. 24487171

Gene Structure 3680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g26680.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGATCTTTGTTGATGGGCAACTCTCTACCACAGACTCTTCTGCATCGCCTCAGGGACGGGATATTCTGGTTGCTCTATTGGAACACCCTGCTTTGGTAGAAGCCTCAGCTTCGTTCAAGGCTATCCCGGAGAGGAGATTCTCTGTACGTGAAGAGTCAGTTGTGGAGGCAACGCCACCCGGTAAATGGGTTTATTTGTTCCAGAGAGAATTTGCAACTGTTGATCCGGCATTTGTGGATTTTGTTGGAACTGATGAAGCAACGACCTGTATCGGTGTGGCCATTCGGAATCCGAGAAATGGAATGACCTCAGTTGCTCATATGGATTCTCCAAACATTGTGGATATGGGTCTGTCGCAGATGTTGTCACTCCTTGTTGACCATAACAAGGACATGGAGTTAGATCATGGTAACTACAACACTAAATCAGAAAGTGAGGAAAACATGGATGGTTATTCCTTTCCTTTAGGTGCCAAAATTGTTGAAACTTTATGGAAGAGACCAGAGAAATTCCATATACGTACTCTCTGCATTCTTGGGCATAACACTAGAAGGGATCCCGAGGGAAACGCGTACCCAAACTTCAATGGGTTCATGGTAGGAACTTCCAATGGATCTATTACCCCAGCTATCTTTGACAAAACCTCAAGATGTCCTGATGAAATTGTCAGGAGAATTCGAGTTTCTGTATCATACAAGGACCCCAGTTGGAAAGGAAGGTTACTGGAAACATATGAAACTCAAACTGATCGATTCAAGATAGCTCCATGTTGCTGGACACTGCAGCAATTACACTTTGCTTTATCATTACAACATTATTCTGATTCAGAAATCCTCATCATGTGTTCTACTTCACCTTCTGCTGAGAGCCCAGATTTTGTGGCGAATATGAGAAGGCATTGGGACTACCTAATCAAACACCCAGATTGGAGAGAAACCTTTCCTATGAAGCAGCCACGCATATTTGAGAGGACTGCCGAAGGAGGCTGGAGAAAGCCACAAGGTTCTGATACATTAATCAGTAGGAGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

N_Asn_amidohyd

Protein Analysis

345

Amino Acids

39.03

Weight (kDa)

5.84

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44420 AT2G44420 AT2G44420
fragaria_vesca	FvH4_7g00170 FvH4_7g00170 FvH4_7g00170 FvH4_7g00170
malus_domestica	MD02G1318500.v1.1 MD07G1002700.v1.1
prunus_persica	Prupe.2G004200_v2.0.a1 Prupe.2G004200_v2.0.a1 Prupe.2G004200_v2.0.a1 Prupe.2G004200_v2.0.a1 Prupe.2G004200_v2.0.a1 Prupe.2G004200_v2.0.a1
pyrus_communis	pycom02g26680 pycom07g00270
rosa_chinensis	RchiOBHm_Chr1g0313421
rosa_laevigata	RLG00000030798
rosa_multiflora	Rmu_sc0000035.1_g000046
rosa_roxburghii	Rroxscaffold_4G00332200
rosa_rugosa	RorugPtG0004900.1
rosa_samantha	Rh1AG003500 Rh1BG000400 Rh1CG001200 Rh1CG007800 Rh1DG002900 Rh1DG003300
rosa_wichuraiana	Rw1G000220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	470
AccII	CGCG	1 cut(s)	572
AclWI	GGATC	4 cut(s)	218, 551, 564, 622
AcoI	YGGCCR	1 cut(s)	279
AcsI	RAATTY	3 cut(s)	209, 509, 675
AfaI	GTAC	3 cut(s)	147, 523, 575
AfiI	CCNNNNNNNGG	4 cut(s)	94, 186, 299, 388
AflIII	ACRYGT	1 cut(s)	570
AgsI	TTSAA	4 cut(s)	118, 485, 586, 757
AluBI	AGCT	3 cut(s)	110, 629, 764
AluI	AGCT	3 cut(s)	110, 629, 764
Alw26I	GTCTC	1 cut(s)	493
AlwI	GGATC	4 cut(s)	218, 551, 564, 622
Ama87I	CYCGRG	1 cut(s)	560
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	2 cut(s)	784, 952
ApoI	RAATTY	3 cut(s)	209, 509, 675
AseI	ATTAAT	1 cut(s)	1016
Asp700I	GAANNNNTTC	1 cut(s)	939
AspS9I	GGNCC	1 cut(s)	700
AsuC2I	CCSGG	2 cut(s)	128, 180
AsuHPI	GGTGA	1 cut(s)	846
AvaI	CYCGRG	1 cut(s)	560
AvaII	GGWCC	1 cut(s)	700
AxyI	CCTNAGG	1 cut(s)	51
BalI	TGGCCA	1 cut(s)	281
BamHI	GGATCC	1 cut(s)	556
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	872
BarI	GAAGNNNNNNTAC	2 cut(s)	566, 598
BbvCI	CCTCAGC	1 cut(s)	106
BbvI	GCAGC	2 cut(s)	796, 964
BccI	CCATC	2 cut(s)	8, 443
BcnI	CCSGG	2 cut(s)	128, 180
BcoDI	GTCTC	1 cut(s)	493
BfaI	CTAG	2 cut(s)	549, 1033
BfmI	CTRYAG	1 cut(s)	782
BisI	GCNGC	2 cut(s)	785, 953
BlsI	GCNGC	2 cut(s)	786, 954
Bme1390I	CCNGG	2 cut(s)	128, 180
Bme18I	GGWCC	1 cut(s)	700
BmeT110I	CYCGRG	1 cut(s)	560
BmgT120I	GGNCC	1 cut(s)	700
BmiI	GGNNCC	3 cut(s)	472, 558, 702
BmrFI	CCNGG	2 cut(s)	128, 180
BmrI	ACTGGG	1 cut(s)	699
BmsI	GCATC	1 cut(s)	53
BmuI	ACTGGG	1 cut(s)	699
BpmI	CTGGAG	1 cut(s)	1009
Bpu10I	CCTNAGC	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	631
BpuMI	CCSGG	2 cut(s)	128, 180
Bsa29I	ATCGAT	1 cut(s)	751
BsaAI	YACGTR	2 cut(s)	149, 521
BsaI	GGTCTC	1 cut(s)	493
BsaJI	CCNNGG	1 cut(s)	561
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 186, 299, 388
Bse1I	ACTGG	2 cut(s)	705, 729
Bse21I	CCTNAGG	1 cut(s)	51
BseCI	ATCGAT	1 cut(s)	751
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	4 cut(s)	94, 186, 299, 388
BseMII	CTCAG	4 cut(s)	65, 120, 324, 855
BseNI	ACTGG	2 cut(s)	705, 729
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	796, 964
BseYI	CCCAGC	1 cut(s)	625
Bsh1236I	CGCG	1 cut(s)	572
BshFI	GGCC	1 cut(s)	281
BshNI	GGYRCC	1 cut(s)	470
BshVI	ATCGAT	1 cut(s)	751
BsiHKCI	CYCGRG	1 cut(s)	560
BsiSI	CCGG	3 cut(s)	128, 180, 227
BslFI	GGGAC	2 cut(s)	69, 917
BslI	CCNNNNNNNGG	4 cut(s)	94, 186, 299, 388
BsmAI	GTCTC	1 cut(s)	493
BsmFI	GGGAC	2 cut(s)	69, 917
BsmI	GAATGC	1 cut(s)	531
BsnI	GGCC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	493
BsoBI	CYCGRG	1 cut(s)	560
Bsp1286I	GDGCHC	1 cut(s)	872
Bsp143I	GATC	6 cut(s)	3, 223, 403, 556, 614, 748
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	4 cut(s)	64, 119, 323, 856
BspDI	ATCGAT	1 cut(s)	751
BspFNI	CGCG	1 cut(s)	572
BspLI	GGNNCC	3 cut(s)	472, 558, 702
BspMAI	CTGCAG	1 cut(s)	786
BspPI	GGATC	4 cut(s)	218, 551, 564, 622
BspT107I	GGYRCC	1 cut(s)	470
BspTNI	GGTCTC	1 cut(s)	493
BsrI	ACTGG	2 cut(s)	705, 729
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	6 cut(s)	3, 223, 403, 556, 614, 748
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	3 cut(s)	43, 147, 491
BstBAI	YACGTR	2 cut(s)	149, 521
BstDEI	CTNAG	4 cut(s)	51, 106, 310, 864
BstF5I	GGATG	1 cut(s)	454
BstFNI	CGCG	1 cut(s)	572
BstKTI	GATC	6 cut(s)	6, 226, 406, 559, 617, 751
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	6 cut(s)	3, 223, 403, 556, 614, 748
BstSCI	CCNGG	2 cut(s)	126, 178
BstSFI	CTRYAG	1 cut(s)	782
BstSNI	TACGTA	1 cut(s)	521
BstUI	CGCG	1 cut(s)	572
BstV1I	GCAGC	2 cut(s)	796, 964
BstX2I	RGATCY	2 cut(s)	556, 614
BstXI	CCANNNNNNTGG	1 cut(s)	774
BstYI	RGATCY	2 cut(s)	556, 614
Bsu15I	ATCGAT	1 cut(s)	751
Bsu36I	CCTNAGG	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	281
BsuTUI	ATCGAT	1 cut(s)	751
BtgZI	GCGATG	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	454
BtsI	GCAGTG	1 cut(s)	779
BtsIMutI	CAGTG	1 cut(s)	779
Cfr13I	GGNCC	1 cut(s)	700
ClaI	ATCGAT	1 cut(s)	751
Csp6I	GTAC	3 cut(s)	146, 522, 574
CspCI	CAANNNNNGTGG	2 cut(s)	321, 356
CviAII	CATG	6 cut(s)	394, 407, 445, 595, 768, 841
CviQI	GTAC	3 cut(s)	146, 522, 574
DdeI	CTNAG	4 cut(s)	51, 106, 310, 864
DpnI	GATC	6 cut(s)	5, 225, 405, 558, 616, 750
DpnII	GATC	6 cut(s)	3, 223, 403, 556, 614, 748
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	3 cut(s)	43, 147, 491
EarI	CTCTTC	3 cut(s)	43, 147, 491
Eco105I	TACGTA	1 cut(s)	521
Eco24I	GRGCYC	1 cut(s)	872
Eco31I	GGTCTC	1 cut(s)	493
Eco47I	GGWCC	1 cut(s)	700
Eco81I	CCTNAGG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	560
EcoO109I	RGGNCCY	1 cut(s)	700
EcoRI	GAATTC	1 cut(s)	675
EcoT38I	GRGCYC	1 cut(s)	872
FaeI	CATG	6 cut(s)	397, 410, 448, 598, 771, 844
FaqI	GGGAC	2 cut(s)	69, 917
FatI	CATG	6 cut(s)	393, 406, 444, 594, 767, 840
FauNDI	CATATG	2 cut(s)	321, 733
Fnu4HI	GCNGC	2 cut(s)	785, 953
FokI	GGATG	1 cut(s)	461
FriOI	GRGCYC	1 cut(s)	872
Fsp4HI	GCNGC	2 cut(s)	785, 953
FspBI	CTAG	2 cut(s)	549, 1033
GluI	GCNGC	2 cut(s)	785, 953
GsaI	CCCAGC	1 cut(s)	629
GsuI	CTGGAG	1 cut(s)	1009
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	3 cut(s)	128, 180, 227
Hin1II	CATG	6 cut(s)	397, 410, 448, 598, 771, 844
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	7 cut(s)	35, 138, 155, 289, 326, 753, 824
HpaII	CCGG	3 cut(s)	128, 180, 227
HphI	GGTGA	1 cut(s)	846
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	6 cut(s)	288, 294, 430, 823, 829, 1009
Hpy188III	TCNNGA	6 cut(s)	202, 560, 648, 656, 670, 757
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	5 cut(s)	546, 711, 867, 888, 974
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	2 cut(s)	148, 520
HpyCH4V	TGCA	4 cut(s)	44, 215, 531, 784
HpyF3I	CTNAG	4 cut(s)	51, 106, 310, 864
HpySE526I	ACGT	2 cut(s)	148, 520
Hsp92II	CATG	6 cut(s)	397, 410, 448, 598, 771, 844
Kzo9I	GATC	6 cut(s)	3, 223, 403, 556, 614, 748
LmnI	GCTCC	1 cut(s)	769
Lsp1109I	GCAGC	2 cut(s)	796, 964
LweI	GCATC	1 cut(s)	53
MaeI	CTAG	2 cut(s)	549, 1033
MaeII	ACGT	2 cut(s)	148, 520
MaeIII	GTNAC	3 cut(s)	366, 410, 720
MalI	GATC	6 cut(s)	5, 225, 405, 558, 616, 750
MboI	GATC	6 cut(s)	3, 223, 403, 556, 614, 748
MboII	GAAGA	3 cut(s)	30, 164, 508
MflI	RGATCY	2 cut(s)	556, 614
MhlI	GDGCHC	1 cut(s)	872
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	6 cut(s)	209, 477, 509, 663, 675, 788
MluI	ACGCGT	1 cut(s)	570
MluNI	TGGCCA	1 cut(s)	281
MlyI	GAGTC	2 cut(s)	29, 164
MmeI	TCCRAC	2 cut(s)	226, 689
Mox20I	TGGCCA	1 cut(s)	281
MroXI	GAANNNNTTC	1 cut(s)	939
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	1 cut(s)	1016
Msp20I	TGGCCA	1 cut(s)	281
MspI	CCGG	3 cut(s)	128, 180, 227
MspR9I	CCNGG	2 cut(s)	128, 180
Mva1269I	GAATGC	1 cut(s)	531
MvnI	CGCG	1 cut(s)	572
NciI	CCSGG	2 cut(s)	128, 180
NdeI	CATATG	2 cut(s)	321, 733
NdeII	GATC	6 cut(s)	3, 223, 403, 556, 614, 748
NlaIII	CATG	6 cut(s)	397, 410, 448, 598, 771, 844
NlaIV	GGNNCC	3 cut(s)	472, 558, 702
NmuCI	GTSAC	1 cut(s)	366
PctI	GAATGC	1 cut(s)	531
PdmI	GAANNNNTTC	1 cut(s)	939
PfeI	GAWTC	5 cut(s)	138, 289, 326, 753, 824
PfoI	TCCNGGA	1 cut(s)	126
PkrI	GCNGC	2 cut(s)	786, 954
PleI	GAGTC	2 cut(s)	29, 163
PpsI	GAGTC	2 cut(s)	29, 163
Ppu21I	YACGTR	2 cut(s)	149, 521
PpuMI	RGGWCCY	1 cut(s)	700
PshBI	ATTAAT	1 cut(s)	1016
Psp5II	RGGWCCY	1 cut(s)	700
PspFI	CCCAGC	1 cut(s)	625
PspN4I	GGNNCC	3 cut(s)	472, 558, 702
PspPI	GGNCC	1 cut(s)	700
PspPPI	RGGWCCY	1 cut(s)	700
PstI	CTGCAG	1 cut(s)	786
PsuI	RGATCY	2 cut(s)	556, 614
RsaI	GTAC	3 cut(s)	147, 523, 575
RsaNI	GTAC	3 cut(s)	146, 522, 574
SaqAI	TTAA	1 cut(s)	1016
SatI	GCNGC	2 cut(s)	785, 953
Sau3AI	GATC	6 cut(s)	3, 223, 403, 556, 614, 748
Sau96I	GGNCC	1 cut(s)	700
SchI	GAGTC	2 cut(s)	29, 164
ScrFI	CCNGG	2 cut(s)	128, 180
SduI	GDGCHC	1 cut(s)	872
SfaNI	GCATC	1 cut(s)	53
SfcI	CTRYAG	1 cut(s)	782
SinI	GGWCC	1 cut(s)	700
SmlI	CTYRAG	1 cut(s)	646
SmoI	CTYRAG	1 cut(s)	646
SnaBI	TACGTA	1 cut(s)	521
Sse9I	AATT	6 cut(s)	209, 477, 509, 663, 675, 788
SspMI	CTAG	2 cut(s)	549, 1033
StyD4I	CCNGG	2 cut(s)	126, 178
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	2 cut(s)	151, 523
TaqI	TCGA	2 cut(s)	679, 751
TasI	AATT	6 cut(s)	209, 477, 509, 663, 675, 788
TfiI	GAWTC	5 cut(s)	138, 289, 326, 753, 824
Tru1I	TTAA	1 cut(s)	1016
Tru9I	TTAA	1 cut(s)	1016
TscAI	CASTG	1 cut(s)	786
TseFI	GTSAC	1 cut(s)	366
TseI	GCWGC	2 cut(s)	784, 952
Tsp45I	GTSAC	1 cut(s)	366
TspDTI	ATGAA	5 cut(s)	270, 583, 675, 750, 962
TspRI	CASTG	1 cut(s)	786
VpaK11BI	GGWCC	1 cut(s)	700
VspI	ATTAAT	1 cut(s)	1016
XapI	RAATTY	3 cut(s)	209, 509, 675
XcmI	CCANNNNNNNNNTGG	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	939
XspI	CTAG	2 cut(s)	549, 1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.