Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005345

Physical Location & Seq

Genomic Coordinates Forward (+)

279502 .. 283388

Gene Structure 3887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g00270.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGATCTTTGTTGATGGGCTTCCCTTTTCTACAGACTCTTCTGCATCGCCTCAGGGATGGGATACTCTGGTTGCTCTACTGGAACACCCTGCTTTGGTAGAAGCCTCAAATTCGTTCAAAGCTATCTCGGAGAGGAGATTCTCTGTACGTGAAGAATCAGTTCTGGACACATCGCCACGTAGTAAATGGGTTTATTTGTTCCAGAGAGAATATGCAACTGTTGATCCAGCATTGGTGGATTTTGTTGGAACTGATGAAGCAACAACCTGTATCGGTGTGGCCATCCGGAATCCTAGAAATGGAATGACCTCAGTTGCTCATATGGATTCTCCAAACATTGTGGACACGGGTTTATCCCAAATGCTGTCACTCCTTGTTGACCATAACACGGATATGGAGTTAGATGTGCATCTAGTTGGTGGATTTGAAGATGTTTCAACTAATCATGGTAACTACAACACTGGATCAGAAAGTCAGGAAAACTTGGATGGTTATTCCTTCCCTTTAGGTGCCAAAATTGTTGAAACTTTAAGGAAGAGACCAGAGAAATTCCATATACGTACTCTATGCATTCTTGGGCATAACACTAGAAGGGATCCCGAGGGAAACGCGTACCCAAGCTTCAACGGTTTCATGATAGGAACTTCCACCGGATCTATTACCCCAGCTATCTTTGACAAAACCTCAAGATGCCCTGATGAAGTTGTCAGGAGAATTCGAGTTTCTGTATCATATGAGGACACTAGTTGGAAAGGAAAGTTACTAGAAACATATGATACCCAAACTGATCATTTCAAGATAGCTCCATGTTGCTGGACACTGCAGCAGTTACATTTTGCTTTGTCATTACAACGCTACTCTGATTCAGAAATCCTTCTCATGTGTTCTACTTCACCTTCTGCTGAGAACCCAGATTTTGTGGAGAATATGAGAAGGCAATGGGACTACCTAATTAAACACCCAGATTGGAGAGAAACCTTTCCCATGAAGCAGCCACGCATATTTGAGAGGACTGCTGAAGGTGGCTGGAGAAAGCCACAAGGTGCTGATACATTAATGAATAGGAGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

N_Asn_amidohyd

Protein Analysis

358

Amino Acids

40.46

Weight (kDa)

5.43

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44420 AT2G44420 AT2G44420
fragaria_vesca	FvH4_7g00170 FvH4_7g00170 FvH4_7g00170 FvH4_7g00170
malus_domestica	MD02G1318500.v1.1 MD07G1002700.v1.1
prunus_persica	Prupe.2G004200_v2.0.a1 Prupe.2G004200_v2.0.a1 Prupe.2G004200_v2.0.a1 Prupe.2G004200_v2.0.a1 Prupe.2G004200_v2.0.a1 Prupe.2G004200_v2.0.a1
pyrus_communis	pycom02g26680 pycom07g00270
rosa_chinensis	RchiOBHm_Chr1g0313421
rosa_laevigata	RLG00000030798
rosa_multiflora	Rmu_sc0000035.1_g000046
rosa_roxburghii	Rroxscaffold_4G00332200
rosa_rugosa	RorugPtG0004900.1
rosa_samantha	Rh1AG003500 Rh1BG000400 Rh1CG001200 Rh1CG007800 Rh1DG002900 Rh1DG003300
rosa_wichuraiana	Rw1G000220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	509
AccII	CGCG	1 cut(s)	611
AccIII	TCCGGA	1 cut(s)	285
AclWI	GGATC	5 cut(s)	218, 472, 590, 603, 661
AcoI	YGGCCR	1 cut(s)	279
AcsI	RAATTY	3 cut(s)	109, 548, 714
AcuI	CTGAAG	1 cut(s)	1038
AdeI	CACNNNGTG	1 cut(s)	1043
AfaI	GTAC	3 cut(s)	147, 562, 614
AfiI	CCNNNNNNNGG	3 cut(s)	94, 299, 388
AflIII	ACRYGT	1 cut(s)	609
AgsI	TTSAA	6 cut(s)	118, 428, 438, 524, 625, 796
AhlI	ACTAGT	1 cut(s)	743
AluBI	AGCT	4 cut(s)	122, 621, 668, 803
AluI	AGCT	4 cut(s)	122, 621, 668, 803
Alw26I	GTCTC	1 cut(s)	532
AlwI	GGATC	5 cut(s)	218, 472, 590, 603, 661
Ama87I	CYCGRG	1 cut(s)	599
Aor13HI	TCCGGA	1 cut(s)	285
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	2 cut(s)	823, 991
ApoI	RAATTY	3 cut(s)	109, 548, 714
AseI	ATTAAT	1 cut(s)	1055
Asp700I	GAANNNNTTC	3 cut(s)	159, 873, 978
AsuHPI	GGTGA	1 cut(s)	885
AvaI	CYCGRG	1 cut(s)	599
AxyI	CCTNAGG	1 cut(s)	51
BaeI	ACNNNNGTAYC	2 cut(s)	54, 87
BalI	TGGCCA	1 cut(s)	281
BamHI	GGATCC	1 cut(s)	595
BanI	GGYRCC	1 cut(s)	509
BarI	GAAGNNNNNNTAC	2 cut(s)	605, 637
BbvI	GCAGC	2 cut(s)	835, 1003
BccI	CCATC	4 cut(s)	8, 51, 290, 482
BciVI	GTATCC	1 cut(s)	55
BclI	TGATCA	1 cut(s)	787
BcoDI	GTCTC	1 cut(s)	532
BcuI	ACTAGT	1 cut(s)	743
BfaI	CTAG	6 cut(s)	294, 413, 588, 744, 764, 1072
BfmI	CTRYAG	2 cut(s)	30, 821
BfuI	GTATCC	1 cut(s)	55
BisI	GCNGC	2 cut(s)	824, 992
BlsI	GCNGC	2 cut(s)	825, 993
BmeT110I	CYCGRG	1 cut(s)	599
BmiI	GGNNCC	2 cut(s)	511, 597
BmsI	GCATC	3 cut(s)	53, 418, 680
BpmI	CTGGAG	1 cut(s)	1048
BpuEI	CTTGAG	1 cut(s)	670
BsaAI	YACGTR	3 cut(s)	149, 179, 560
BsaBI	GATNNNNATC	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	532
BsaJI	CCNNGG	1 cut(s)	600
BsaWI	WCCGGW	2 cut(s)	285, 650
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 299, 388
Bse1I	ACTGG	2 cut(s)	84, 466
Bse21I	CCTNAGG	1 cut(s)	51
Bse3DI	GCAATG	1 cut(s)	944
Bse8I	GATNNNNATC	1 cut(s)	408
BseAI	TCCGGA	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	600
BseGI	GGATG	3 cut(s)	62, 282, 493
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	3 cut(s)	94, 299, 388
BseMI	GCAATG	1 cut(s)	944
BseMII	CTCAG	3 cut(s)	65, 324, 894
BseNI	ACTGG	2 cut(s)	84, 466
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	835, 1003
BseYI	CCCAGC	1 cut(s)	664
Bsh1236I	CGCG	1 cut(s)	611
BshFI	GGCC	1 cut(s)	281
BshNI	GGYRCC	1 cut(s)	509
BsiHKCI	CYCGRG	1 cut(s)	599
BsiSI	CCGG	2 cut(s)	286, 651
BslFI	GGGAC	1 cut(s)	956
BslI	CCNNNNNNNGG	3 cut(s)	94, 299, 388
BsmAI	GTCTC	1 cut(s)	532
BsmFI	GGGAC	1 cut(s)	956
BsmI	GAATGC	1 cut(s)	570
BsnI	GGCC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	532
BsoBI	CYCGRG	1 cut(s)	599
Bsp13I	TCCGGA	1 cut(s)	285
Bsp143I	GATC	6 cut(s)	3, 223, 464, 595, 653, 787
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	3 cut(s)	64, 323, 895
BspEI	TCCGGA	1 cut(s)	285
BspFNI	CGCG	1 cut(s)	611
BspHI	TCATGA	1 cut(s)	633
BspLI	GGNNCC	2 cut(s)	511, 597
BspMAI	CTGCAG	1 cut(s)	825
BspPI	GGATC	5 cut(s)	218, 472, 590, 603, 661
BspT107I	GGYRCC	1 cut(s)	509
BspTNI	GGTCTC	1 cut(s)	532
BsrDI	GCAATG	1 cut(s)	944
BsrI	ACTGG	2 cut(s)	84, 466
BssECI	CCNNGG	1 cut(s)	600
BssMI	GATC	6 cut(s)	3, 223, 464, 595, 653, 787
Bst4CI	ACNGT	2 cut(s)	220, 629
Bst6I	CTCTTC	2 cut(s)	43, 530
BstBAI	YACGTR	3 cut(s)	149, 179, 560
BstDEI	CTNAG	3 cut(s)	51, 310, 903
BstF5I	GGATG	3 cut(s)	62, 282, 493
BstFNI	CGCG	1 cut(s)	611
BstKTI	GATC	6 cut(s)	6, 226, 467, 598, 656, 790
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	6 cut(s)	3, 223, 464, 595, 653, 787
BstSFI	CTRYAG	2 cut(s)	30, 821
BstSNI	TACGTA	1 cut(s)	560
BstUI	CGCG	1 cut(s)	611
BstV1I	GCAGC	2 cut(s)	835, 1003
BstX2I	RGATCY	2 cut(s)	595, 653
BstXI	CCANNNNNNTGG	1 cut(s)	813
BstYI	RGATCY	2 cut(s)	595, 653
Bsu36I	CCTNAGG	1 cut(s)	51
BsuI	GTATCC	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	281
BtgZI	GCGATG	2 cut(s)	30, 156
BtsCI	GGATG	3 cut(s)	62, 282, 493
BtsI	GCAGTG	1 cut(s)	818
BtsIMutI	CAGTG	2 cut(s)	459, 818
CciI	TCATGA	1 cut(s)	633
Csp6I	GTAC	3 cut(s)	146, 561, 613
CspCI	CAANNNNNGTGG	2 cut(s)	321, 356
CviAII	CATG	5 cut(s)	446, 634, 807, 880, 985
CviQI	GTAC	3 cut(s)	146, 561, 613
DdeI	CTNAG	3 cut(s)	51, 310, 903
DpnI	GATC	6 cut(s)	5, 225, 466, 597, 655, 789
DpnII	GATC	6 cut(s)	3, 223, 464, 595, 653, 787
DraIII	CACNNNGTG	1 cut(s)	1043
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	2 cut(s)	43, 530
EarI	CTCTTC	2 cut(s)	43, 530
Eco105I	TACGTA	1 cut(s)	560
Eco31I	GGTCTC	1 cut(s)	532
Eco57I	CTGAAG	1 cut(s)	1038
Eco81I	CCTNAGG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	599
EcoRI	GAATTC	1 cut(s)	714
EcoT22I	ATGCAT	1 cut(s)	572
FaeI	CATG	5 cut(s)	449, 637, 810, 883, 988
FaqI	GGGAC	1 cut(s)	956
FatI	CATG	5 cut(s)	445, 633, 806, 879, 984
FauNDI	CATATG	3 cut(s)	321, 733, 772
FbaI	TGATCA	1 cut(s)	787
Fnu4HI	GCNGC	2 cut(s)	824, 992
FokI	GGATG	3 cut(s)	69, 269, 500
Fsp4HI	GCNGC	2 cut(s)	824, 992
FspBI	CTAG	6 cut(s)	294, 413, 588, 744, 764, 1072
GluI	GCNGC	2 cut(s)	824, 992
GsaI	CCCAGC	1 cut(s)	668
GsuI	CTGGAG	1 cut(s)	1048
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	2 cut(s)	286, 651
Hin1II	CATG	5 cut(s)	449, 637, 810, 883, 988
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HindIII	AAGCTT	1 cut(s)	619
HinfI	GANTC	6 cut(s)	35, 138, 155, 289, 326, 863
HpaII	CCGG	2 cut(s)	286, 651
HphI	GGTGA	1 cut(s)	885
Hpy166II	GTNNAC	2 cut(s)	343, 379
Hpy188I	TCNGA	4 cut(s)	130, 469, 862, 868
Hpy188III	TCNNGA	9 cut(s)	164, 202, 286, 476, 599, 634, 687, 709, 796
Hpy8I	GTNNAC	2 cut(s)	343, 379
HpyAV	CCTTC	6 cut(s)	508, 585, 884, 906, 927, 1013
HpyCH4III	ACNGT	2 cut(s)	220, 629
HpyCH4IV	ACGT	3 cut(s)	148, 178, 559
HpyCH4V	TGCA	5 cut(s)	44, 215, 409, 570, 823
HpyF3I	CTNAG	3 cut(s)	51, 310, 903
HpySE526I	ACGT	3 cut(s)	148, 178, 559
Hsp92II	CATG	5 cut(s)	449, 637, 810, 883, 988
Kpn2I	TCCGGA	1 cut(s)	285
Ksp22I	TGATCA	1 cut(s)	787
Kzo9I	GATC	6 cut(s)	3, 223, 464, 595, 653, 787
LmnI	GCTCC	1 cut(s)	808
Lsp1109I	GCAGC	2 cut(s)	835, 1003
LweI	GCATC	3 cut(s)	53, 418, 680
MaeI	CTAG	6 cut(s)	294, 413, 588, 744, 764, 1072
MaeII	ACGT	3 cut(s)	148, 178, 559
MaeIII	GTNAC	4 cut(s)	366, 449, 759, 828
MalI	GATC	6 cut(s)	5, 225, 466, 597, 655, 789
MboI	GATC	6 cut(s)	3, 223, 464, 595, 653, 787
MboII	GAAGA	4 cut(s)	30, 164, 440, 547
MflI	RGATCY	2 cut(s)	595, 653
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	5 cut(s)	109, 516, 548, 714, 951
MluI	ACGCGT	1 cut(s)	609
MluNI	TGGCCA	1 cut(s)	281
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	2 cut(s)	226, 728
MnlI	CCTC	9 cut(s)	60, 115, 126, 319, 595, 694, 730, 1002, 1059
Mox20I	TGGCCA	1 cut(s)	281
Mph1103I	ATGCAT	1 cut(s)	572
MroI	TCCGGA	1 cut(s)	285
MroXI	GAANNNNTTC	3 cut(s)	159, 873, 978
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	3 cut(s)	530, 954, 1055
MslI	CAYNNNNRTG	1 cut(s)	392
Msp20I	TGGCCA	1 cut(s)	281
MspI	CCGG	2 cut(s)	286, 651
Mva1269I	GAATGC	1 cut(s)	570
MvnI	CGCG	1 cut(s)	611
NdeI	CATATG	3 cut(s)	321, 733, 772
NdeII	GATC	6 cut(s)	3, 223, 464, 595, 653, 787
NlaIII	CATG	5 cut(s)	449, 637, 810, 883, 988
NlaIV	GGNNCC	2 cut(s)	511, 597
NmuCI	GTSAC	1 cut(s)	366
NsiI	ATGCAT	1 cut(s)	572
PagI	TCATGA	1 cut(s)	633
PctI	GAATGC	1 cut(s)	570
PdmI	GAANNNNTTC	3 cut(s)	159, 873, 978
PfeI	GAWTC	5 cut(s)	138, 155, 289, 326, 863
PkrI	GCNGC	2 cut(s)	825, 993
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
Ppu21I	YACGTR	3 cut(s)	149, 179, 560
PshBI	ATTAAT	1 cut(s)	1055
PspFI	CCCAGC	1 cut(s)	664
PspN4I	GGNNCC	2 cut(s)	511, 597
PstI	CTGCAG	1 cut(s)	825
PsuI	RGATCY	2 cut(s)	595, 653
RsaI	GTAC	3 cut(s)	147, 562, 614
RsaNI	GTAC	3 cut(s)	146, 561, 613
RseI	CAYNNNNRTG	1 cut(s)	392
SaqAI	TTAA	3 cut(s)	530, 954, 1055
SatI	GCNGC	2 cut(s)	824, 992
Sau3AI	GATC	6 cut(s)	3, 223, 464, 595, 653, 787
SchI	GAGTC	1 cut(s)	29
SfaNI	GCATC	3 cut(s)	53, 418, 680
SfcI	CTRYAG	2 cut(s)	30, 821
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	685
SmoI	CTYRAG	1 cut(s)	685
SnaBI	TACGTA	1 cut(s)	560
SpeI	ACTAGT	1 cut(s)	743
Sse9I	AATT	5 cut(s)	109, 516, 548, 714, 951
SspMI	CTAG	6 cut(s)	294, 413, 588, 744, 764, 1072
TaaI	ACNGT	2 cut(s)	220, 629
TaiI	ACGT	3 cut(s)	151, 181, 562
TaqI	TCGA	1 cut(s)	718
TasI	AATT	5 cut(s)	109, 516, 548, 714, 951
TfiI	GAWTC	5 cut(s)	138, 155, 289, 326, 863
Tru1I	TTAA	3 cut(s)	530, 954, 1055
Tru9I	TTAA	3 cut(s)	530, 954, 1055
TscAI	CASTG	2 cut(s)	466, 825
TseFI	GTSAC	1 cut(s)	366
TseI	GCWGC	2 cut(s)	823, 991
Tsp45I	GTSAC	1 cut(s)	366
TspDTI	ATGAA	5 cut(s)	270, 622, 714, 1001, 1073
TspGWI	ACGGA	1 cut(s)	404
TspRI	CASTG	2 cut(s)	466, 825
VspI	ATTAAT	1 cut(s)	1055
XapI	RAATTY	3 cut(s)	109, 548, 714
XcmI	CCANNNNNNNNNTGG	1 cut(s)	183
XmnI	GAANNNNTTC	3 cut(s)	159, 873, 978
XspI	CTAG	6 cut(s)	294, 413, 588, 744, 764, 1072
Zsp2I	ATGCAT	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.