Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000035.1

Orthogroup ID

OG0005345

Physical Location & Seq

Genomic Coordinates Forward (+)

161523 .. 164244

Gene Structure 2722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000035.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

atgatctttgtcggtggacttcctttcccttccgaatcatcttcatcttctcagcctcagggatgggacaccctccaagctttgttggatcacccgtttttggaatctgcctccagtacattcaaggccatcccggagaggaagttctcggcgccccaagaagcagaatcagagaggagatgggtttatctcttccaaagagaatatgcaactgttgatcctgcatatgtcgattttgttggcactgatgaagcaacaacctgtatgggtctttccatccgtaacccggaaactggaatgacgtccgttgcccatttagactctccaaaagttgtggatatgggtctctcccagatggtgtcactactagttcaacccaataaggacgtggagttggatgtgcatctagttggtggttttgaagatgtttcacctaatcatggtaactgtaatactagatcagaaaataaggcaaacttggatggttattcctttcctttagctgccaaaattgttgaaacattatgcaagagccgggagagatttcatattcgaactctatgcattcttcggcataacaccagaagggatcccgagggaaatgcatacccaattttcaacgggttcatgataagcacttccacaggatctattattcctgccagctttgacgaaacctcaagatgtcctgatgaaattgtcaggagaattagagtttctgcatcttatgaggactctagatggaaaggaaggttattggaaacatatgaaactcaaactgatcttttcaaaatagctccatgctgctggagcctatatcagttgcatattgcgttgtccctacaaaattattcagattcggaaatcctccttatgtgttctacttcaccctcttctgaggcaccggattttgtgaaaaatcttagaagggtgtgggactacttgattgagtacccagattggagagaaacctttcctatggagcagccacgcgtatttcagaggactgctgagggaggctggaaagccaaaaggtgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

N_Asn_amidohyd

Protein Analysis

346

Amino Acids

39.27

Weight (kDa)

5.31

Isoelectric Point (pI)

59.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44420 AT2G44420 AT2G44420
fragaria_vesca	FvH4_7g00170 FvH4_7g00170 FvH4_7g00170 FvH4_7g00170
malus_domestica	MD02G1318500.v1.1 MD07G1002700.v1.1
prunus_persica	Prupe.2G004200_v2.0.a1 Prupe.2G004200_v2.0.a1 Prupe.2G004200_v2.0.a1 Prupe.2G004200_v2.0.a1 Prupe.2G004200_v2.0.a1 Prupe.2G004200_v2.0.a1
pyrus_communis	pycom02g26680 pycom07g00270
rosa_chinensis	RchiOBHm_Chr1g0313421
rosa_laevigata	RLG00000030798
rosa_multiflora	Rmu_sc0000035.1_g000046
rosa_roxburghii	Rroxscaffold_4G00332200
rosa_rugosa	RorugPtG0004900.1
rosa_samantha	Rh1AG003500 Rh1BG000400 Rh1CG001200 Rh1CG007800 Rh1DG002900 Rh1DG003300
rosa_wichuraiana	Rw1G000220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	305
AccB1I	GGYRCC	2 cut(s)	151, 901
AccII	CGCG	1 cut(s)	993
AclWI	GGATC	5 cut(s)	96, 212, 584, 597, 655
AcyI	GRCGYC	2 cut(s)	152, 302
AfaI	GTAC	2 cut(s)	118, 953
AfiI	CCNNNNNNNGG	4 cut(s)	100, 286, 293, 440
AflIII	ACRYGT	1 cut(s)	991
AgsI	TTSAA	6 cut(s)	124, 374, 422, 518, 619, 790
AhlI	ACTAGT	1 cut(s)	367
AjiI	CACGTC	1 cut(s)	388
AloI	GAACNNNNNNTCC	2 cut(s)	128, 160
AluBI	AGCT	4 cut(s)	80, 503, 666, 797
AluI	AGCT	4 cut(s)	80, 503, 666, 797
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	5 cut(s)	96, 212, 584, 597, 655
Ama87I	CYCGRG	1 cut(s)	593
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	3 cut(s)	503, 804, 985
Asp700I	GAANNNNTTC	1 cut(s)	972
AspLEI	GCGC	1 cut(s)	154
AsuC2I	CCSGG	3 cut(s)	134, 287, 536
AsuHPI	GGTGA	3 cut(s)	83, 423, 879
AsuII	TTCGAA	1 cut(s)	553
AvaI	CYCGRG	1 cut(s)	593
AxyI	CCTNAGG	1 cut(s)	57
BamHI	GGATCC	1 cut(s)	589
BanI	GGYRCC	2 cut(s)	151, 901
BbvCI	CCTCAGC	1 cut(s)	1011
BbvI	GCAGC	3 cut(s)	490, 791, 997
BccI	CCATC	7 cut(s)	57, 137, 174, 284, 349, 476, 735
BcgI	CGANNNNNNTGC	4 cut(s)	543, 577, 584, 618
BcnI	CCSGG	3 cut(s)	134, 287, 536
BcoDI	GTCTC	1 cut(s)	350
BcuI	ACTAGT	1 cut(s)	367
BfaI	CTAG	4 cut(s)	368, 407, 456, 738
BfoI	RGCGCY	1 cut(s)	155
BisI	GCNGC	3 cut(s)	504, 805, 986
BlsI	GCNGC	3 cut(s)	505, 806, 987
Bme1390I	CCNGG	3 cut(s)	134, 287, 536
BmeT110I	CYCGRG	1 cut(s)	593
BmgBI	CACGTC	1 cut(s)	388
BmiI	GGNNCC	4 cut(s)	153, 591, 812, 903
BmrFI	CCNGG	3 cut(s)	134, 287, 536
BmsI	GCATC	2 cut(s)	412, 731
BpmI	CTGGAG	2 cut(s)	97, 829
Bpu10I	CCTNAGC	1 cut(s)	1011
Bpu14I	TTCGAA	1 cut(s)	553
BpuEI	CTTGAG	1 cut(s)	664
BpuMI	CCSGG	3 cut(s)	134, 287, 536
BsaBI	GATNNNNATC	1 cut(s)	402
BsaHI	GRCGYC	2 cut(s)	152, 302
BsaI	GGTCTC	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	594
BsaWI	WCCGGW	1 cut(s)	904
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	4 cut(s)	100, 286, 293, 440
Bse1I	ACTGG	2 cut(s)	114, 298
Bse21I	CCTNAGG	1 cut(s)	57
Bse8I	GATNNNNATC	1 cut(s)	402
BseDI	CCNNGG	1 cut(s)	594
BseGI	GGATG	5 cut(s)	68, 129, 276, 403, 487
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	4 cut(s)	100, 286, 293, 440
BseMII	CTCAG	4 cut(s)	65, 71, 888, 1002
BseNI	ACTGG	2 cut(s)	114, 298
BseRI	GAGGAG	1 cut(s)	190
BseXI	GCAGC	3 cut(s)	490, 791, 997
Bsh1236I	CGCG	1 cut(s)	993
BshFI	GGCC	1 cut(s)	128
BshNI	GGYRCC	2 cut(s)	151, 901
BsiHKCI	CYCGRG	1 cut(s)	593
BsiSI	CCGG	4 cut(s)	134, 287, 535, 905
BslFI	GGGAC	3 cut(s)	80, 823, 950
BslI	CCNNNNNNNGG	4 cut(s)	100, 286, 293, 440
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	3 cut(s)	80, 823, 950
BsmI	GAATGC	1 cut(s)	564
BsnI	GGCC	1 cut(s)	128
Bso31I	GGTCTC	1 cut(s)	350
BsoBI	CYCGRG	1 cut(s)	593
Bsp119I	TTCGAA	1 cut(s)	553
Bsp143I	GATC	7 cut(s)	3, 88, 217, 458, 589, 647, 781
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	4 cut(s)	64, 70, 889, 1003
BspFNI	CGCG	1 cut(s)	993
BspHI	TCATGA	1 cut(s)	627
BspLI	GGNNCC	4 cut(s)	153, 591, 812, 903
BspPI	GGATC	5 cut(s)	96, 212, 584, 597, 655
BspT104I	TTCGAA	1 cut(s)	553
BspT107I	GGYRCC	2 cut(s)	151, 901
BspTNI	GGTCTC	1 cut(s)	350
BsrI	ACTGG	2 cut(s)	114, 298
BssECI	CCNNGG	1 cut(s)	594
BssMI	GATC	7 cut(s)	3, 88, 217, 458, 589, 647, 781
BssNI	GRCGYC	2 cut(s)	152, 302
Bst4CI	ACNGT	2 cut(s)	214, 449
Bst6I	CTCTTC	2 cut(s)	197, 898
BstACI	GRCGYC	2 cut(s)	152, 302
BstBI	TTCGAA	1 cut(s)	553
BstC8I	GCNNGC	1 cut(s)	664
BstDEI	CTNAG	5 cut(s)	51, 57, 897, 923, 1011
BstF5I	GGATG	5 cut(s)	68, 129, 276, 403, 487
BstFNI	CGCG	1 cut(s)	993
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	7 cut(s)	6, 91, 220, 461, 592, 650, 784
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	7 cut(s)	3, 88, 217, 458, 589, 647, 781
BstMWI	GCNNNNNNNGC	1 cut(s)	810
BstSCI	CCNGG	3 cut(s)	132, 285, 534
BstUI	CGCG	1 cut(s)	993
BstV1I	GCAGC	3 cut(s)	490, 791, 997
BstX2I	RGATCY	2 cut(s)	589, 647
BstXI	CCANNNNNNTGG	1 cut(s)	807
BstYI	RGATCY	2 cut(s)	589, 647
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	128
BtrI	CACGTC	1 cut(s)	388
BtsCI	GGATG	5 cut(s)	68, 129, 276, 403, 487
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	664
CciI	TCATGA	1 cut(s)	627
CfoI	GCGC	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	117, 952
CspCI	CAANNNNNGTGG	2 cut(s)	315, 350
CviAII	CATG	3 cut(s)	440, 628, 801
CviQI	GTAC	2 cut(s)	117, 952
DdeI	CTNAG	5 cut(s)	51, 57, 897, 923, 1011
DinI	GGCGCC	1 cut(s)	153
DpnI	GATC	7 cut(s)	5, 90, 219, 460, 591, 649, 783
DpnII	GATC	7 cut(s)	3, 88, 217, 458, 589, 647, 781
Eam1104I	CTCTTC	2 cut(s)	197, 898
EarI	CTCTTC	2 cut(s)	197, 898
Eco31I	GGTCTC	1 cut(s)	350
Eco81I	CCTNAGG	1 cut(s)	57
Eco88I	CYCGRG	1 cut(s)	593
EcoT22I	ATGCAT	2 cut(s)	566, 607
EgeI	GGCGCC	1 cut(s)	153
EheI	GGCGCC	1 cut(s)	153
FaeI	CATG	3 cut(s)	443, 631, 804
FalI	AAGNNNNNCTT	2 cut(s)	461, 493
FaqI	GGGAC	3 cut(s)	80, 823, 950
FatI	CATG	3 cut(s)	439, 627, 800
FauNDI	CATATG	2 cut(s)	226, 766
Fnu4HI	GCNGC	3 cut(s)	504, 805, 986
FokI	GGATG	5 cut(s)	75, 116, 263, 410, 494
Fsp4HI	GCNGC	3 cut(s)	504, 805, 986
FspBI	CTAG	4 cut(s)	368, 407, 456, 738
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	3 cut(s)	504, 805, 986
GsuI	CTGGAG	2 cut(s)	97, 829
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	4 cut(s)	134, 287, 535, 905
HhaI	GCGC	1 cut(s)	154
Hin1I	GRCGYC	2 cut(s)	152, 302
Hin1II	CATG	3 cut(s)	443, 631, 804
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HindIII	AAGCTT	1 cut(s)	78
HinfI	GANTC	6 cut(s)	35, 104, 167, 320, 734, 857
HpaII	CCGG	4 cut(s)	134, 287, 535, 905
HphI	GGTGA	3 cut(s)	83, 423, 879
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	7 cut(s)	34, 172, 463, 856, 862, 898, 1002
Hpy188III	TCNNGA	6 cut(s)	593, 628, 681, 689, 703, 738
Hpy8I	GTNNAC	1 cut(s)	17
HpyAV	CCTTC	4 cut(s)	39, 579, 744, 921
HpyCH4III	ACNGT	2 cut(s)	214, 449
HpyCH4IV	ACGT	2 cut(s)	302, 387
HpyCH4V	TGCA	8 cut(s)	209, 224, 403, 528, 564, 605, 722, 826
HpyF10VI	GCNNNNNNNGC	1 cut(s)	810
HpyF3I	CTNAG	5 cut(s)	51, 57, 897, 923, 1011
HpySE526I	ACGT	2 cut(s)	302, 387
Hsp92I	GRCGYC	2 cut(s)	152, 302
Hsp92II	CATG	3 cut(s)	443, 631, 804
HspAI	GCGC	1 cut(s)	152
KasI	GGCGCC	1 cut(s)	151
Kzo9I	GATC	7 cut(s)	3, 88, 217, 458, 589, 647, 781
LmnI	GCTCC	3 cut(s)	802, 810, 982
Lsp1109I	GCAGC	3 cut(s)	490, 791, 997
LweI	GCATC	2 cut(s)	412, 731
MaeI	CTAG	4 cut(s)	368, 407, 456, 738
MaeII	ACGT	2 cut(s)	302, 387
MaeIII	GTNAC	3 cut(s)	281, 360, 443
MalI	GATC	7 cut(s)	5, 90, 219, 460, 591, 649, 783
MboI	GATC	7 cut(s)	3, 88, 217, 458, 589, 647, 781
MboII	GAAGA	6 cut(s)	33, 39, 184, 434, 560, 885
MflI	RGATCY	2 cut(s)	589, 647
MluCI	AATT	5 cut(s)	510, 612, 696, 708, 847
MluI	ACGCGT	1 cut(s)	991
Mly113I	GGCGCC	1 cut(s)	152
MlyI	GAGTC	2 cut(s)	314, 728
MmeI	TCCRAC	2 cut(s)	66, 375
Mph1103I	ATGCAT	2 cut(s)	566, 607
MroXI	GAANNNNTTC	1 cut(s)	972
MspI	CCGG	4 cut(s)	134, 287, 535, 905
MspR9I	CCNGG	3 cut(s)	134, 287, 536
Mva1269I	GAATGC	1 cut(s)	564
MvnI	CGCG	1 cut(s)	993
MwoI	GCNNNNNNNGC	1 cut(s)	810
NarI	GGCGCC	1 cut(s)	152
NciI	CCSGG	3 cut(s)	134, 287, 536
NdeI	CATATG	2 cut(s)	226, 766
NdeII	GATC	7 cut(s)	3, 88, 217, 458, 589, 647, 781
NlaIII	CATG	3 cut(s)	443, 631, 804
NlaIV	GGNNCC	4 cut(s)	153, 591, 812, 903
NmeAIII	GCCGAG	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	360
NsiI	ATGCAT	2 cut(s)	566, 607
NspV	TTCGAA	1 cut(s)	553
PagI	TCATGA	1 cut(s)	627
PctI	GAATGC	1 cut(s)	564
PdmI	GAANNNNTTC	1 cut(s)	972
PfeI	GAWTC	4 cut(s)	35, 104, 167, 857
PfoI	TCCNGGA	1 cut(s)	132
PkrI	GCNGC	3 cut(s)	505, 806, 987
PleI	GAGTC	2 cut(s)	314, 728
PluTI	GGCGCC	1 cut(s)	155
PpsI	GAGTC	2 cut(s)	314, 728
PspN4I	GGNNCC	4 cut(s)	153, 591, 812, 903
PsuI	RGATCY	2 cut(s)	589, 647
RsaI	GTAC	2 cut(s)	118, 953
RsaNI	GTAC	2 cut(s)	117, 952
SatI	GCNGC	3 cut(s)	504, 805, 986
Sau3AI	GATC	7 cut(s)	3, 88, 217, 458, 589, 647, 781
SchI	GAGTC	2 cut(s)	314, 728
ScrFI	CCNGG	3 cut(s)	134, 287, 536
SfaNI	GCATC	2 cut(s)	412, 731
SfoI	GGCGCC	1 cut(s)	153
SfuI	TTCGAA	1 cut(s)	553
SmlI	CTYRAG	1 cut(s)	679
SmoI	CTYRAG	1 cut(s)	679
SpeI	ACTAGT	1 cut(s)	367
Sse9I	AATT	5 cut(s)	510, 612, 696, 708, 847
SspDI	GGCGCC	1 cut(s)	151
SspMI	CTAG	4 cut(s)	368, 407, 456, 738
StyD4I	CCNGG	3 cut(s)	132, 285, 534
TaaI	ACNGT	2 cut(s)	214, 449
TaiI	ACGT	2 cut(s)	305, 390
TaqI	TCGA	2 cut(s)	231, 553
TasI	AATT	5 cut(s)	510, 612, 696, 708, 847
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	4 cut(s)	35, 104, 167, 857
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	3 cut(s)	503, 804, 985
Tsp45I	GTSAC	1 cut(s)	360
TspDTI	ATGAA	6 cut(s)	33, 264, 536, 616, 708, 783
TspGWI	ACGGA	2 cut(s)	269, 295
TspRI	CASTG	1 cut(s)	250
XbaI	TCTAGA	1 cut(s)	737
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XmnI	GAANNNNTTC	1 cut(s)	972
XspI	CTAG	4 cut(s)	368, 407, 456, 738
ZraI	GACGTC	1 cut(s)	303
Zsp2I	ATGCAT	2 cut(s)	566, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.